ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet49e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence 34 8.7
2emb|Z98756.1|MLCB2492 Mycobacterium leprae cosmid B2492 34 8.7
3emb|AL583923.1|MLEPRTN7 Mycobacterium leprae strain TN complete ... 34 8.7
4emb|AL583921.1|MLEPRTN5 Mycobacterium leprae strain TN complete ... 34 8.7
5gb|AF222753.1|AF222753 Bradyrhizobium sp. WM9 nodulation region 1 34 8.7
6gb|AE009549.1| Brucella melitensis 16M chromosome I, section 106... 34 8.7
7gb|AE015451.1| Pseudomonas putida KT2440 complete genome 34 8.7
8gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 34 8.7

>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 7      tgcccgcgaatacggcg 23
              |||||||||||||||||
Sbjct: 840003 tgcccgcgaatacggcg 839987



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>emb|Z98756.1|MLCB2492 Mycobacterium leprae cosmid B2492
          Length = 37144

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 7     tgcccgcgaatacggcg 23
             |||||||||||||||||
Sbjct: 10281 tgcccgcgaatacggcg 10265



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>emb|AL583923.1|MLEPRTN7 Mycobacterium leprae strain TN complete genome; segment 7/10
          Length = 348950

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 7      tgcccgcgaatacggcg 23
              |||||||||||||||||
Sbjct: 234551 tgcccgcgaatacggcg 234567



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>emb|AL583921.1|MLEPRTN5 Mycobacterium leprae strain TN complete genome; segment 5/10
          Length = 332450

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 7      tgcccgcgaatacggcg 23
              |||||||||||||||||
Sbjct: 191191 tgcccgcgaatacggcg 191175



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>gb|AF222753.1|AF222753 Bradyrhizobium sp. WM9 nodulation region 1
          Length = 33038

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 13    cgaatacggcgctgatc 29
             |||||||||||||||||
Sbjct: 19426 cgaatacggcgctgatc 19410



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>gb|AE009549.1| Brucella melitensis 16M chromosome I, section 106 of 195 of the
            complete sequence
          Length = 10209

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 7    tgcccgcgaatacggcg 23
            |||||||||||||||||
Sbjct: 9881 tgcccgcgaatacggcg 9897



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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 10      ccgcgaatacggcgctg 26
               |||||||||||||||||
Sbjct: 4447276 ccgcgaatacggcgctg 4447260



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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 10      ccgcgaatacggcgctg 26
               |||||||||||||||||
Sbjct: 5102394 ccgcgaatacggcgctg 5102378


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 51,452
Number of Sequences: 3902068
Number of extensions: 51452
Number of successful extensions: 11160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11053
Number of HSP's gapped (non-prelim): 107
length of query: 30
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 10
effective length of database: 17,155,003,908
effective search space: 171550039080
effective search space used: 171550039080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)
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