| Clone Name | baet49c09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Y15962.1|HVGLP1 Hordeum vulgare mRNA for germin-like protein 1 Length = 833 Score = 353 bits (178), Expect = 1e-94 Identities = 181/182 (99%) Strand = Plus / Plus Query: 2 gcgcagtagcaagccatggccaacgcaatgttgctccctgtcctcatctccttcctcgtc 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16 gcgcagtagcaagccatggccaacgcaatgttgctccctgtcctcatctccttcctcgtc 75 Query: 62 ctgcccttctccgccatggccctgacccaggacttctgcgccgccgacctgtcctgcagc 121 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 76 ctgcccttctccgccatggccctgacccaggacttctgcgtcgccgacctgtcctgcagc 135 Query: 122 gacacgccggcggggtacccgtgcaagaccggcgtcggcgcgggggacttctactaccac 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 136 gacacgccggcggggtacccgtgcaagaccggcgtcggcgcgggggacttctactaccac 195 Query: 182 gg 183 || Sbjct: 196 gg 197
>emb|AJ291451.1|HVU291451 Hordeum vulgare mRNA for adenosine diphosphate glucose pyrophosphatase (sagppase gene) Length = 639 Score = 321 bits (162), Expect = 4e-85 Identities = 168/170 (98%) Strand = Plus / Plus Query: 17 atggccaacgcaatgttgctccctgtcctcatctccttcctcgtcctgcccttctccgcc 76 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1 atggccaacgcaatgttgctccctgtcctcgtctccttcctcgtcctgcccttctccgcc 60 Query: 77 atggccctgacccaggacttctgcgccgccgacctgtcctgcagcgacacgccggcgggg 136 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 61 atggccctgacccaggacttctgcgtcgccgacctgtcctgcagcgacacgccggcgggg 120 Query: 137 tacccgtgcaagaccggcgtcggcgcgggggacttctactaccacggcct 186 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tacccgtgcaagaccggcgtcggcgcgggggacttctactaccacggcct 170
>emb|AJ319659.1|TAE319659 Triticum aestivum mRNA for adenosine diphosphate glucose pyrophosphatase Length = 642 Score = 264 bits (133), Expect = 9e-68 Identities = 163/173 (94%) Strand = Plus / Plus Query: 14 gccatggccaacgcaatgttgctccctgtcctcatctccttcctcgtcctgcccttctcc 73 |||||||||||||||||||||||||| || |||||||||||||| || ||||||||||| Sbjct: 1 gccatggccaacgcaatgttgctccccgtgctcatctccttccttatcatgcccttctcc 60 Query: 74 gccatggccctgacccaggacttctgcgccgccgacctgtcctgcagcgacacgccggcg 133 |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 61 gccatggccctgacccaggacttctgcgtcgccgacctgtcctgcagcgacacaccggcg 120 Query: 134 gggtacccgtgcaagaccggcgtcggcgcgggggacttctactaccacggcct 186 ||||||||||||||| |||||||| |||| ||||||||||||||||||||||| Sbjct: 121 gggtacccgtgcaaggccggcgtcagcgcaggggacttctactaccacggcct 173
>ref|XM_482788.1| Oryza sativa (japonica cultivar-group), mRNA Length = 938 Score = 165 bits (83), Expect = 6e-38 Identities = 154/177 (87%), Gaps = 3/177 (1%) Strand = Plus / Plus Query: 13 agccatggccaacgca---atgttgctccctgtcctcatctccttcctcgtcctgccctt 69 |||||||||||| ||| ||| ||||||| |||||| ||||||||||| | ||||| || Sbjct: 98 agccatggccaaggcagtgatgatgctccccgtcctcctctccttcctcctgctgccatt 157 Query: 70 ctccgccatggccctgacccaggacttctgcgccgccgacctgtcctgcagcgacacgcc 129 ||| ||||||| ||||| ||||| ||||||| |||||||||| |||||||||||||||| Sbjct: 158 ctcgtccatggcgctgacgcaggatttctgcgtcgccgacctgacctgcagcgacacgcc 217 Query: 130 ggcggggtacccgtgcaagaccggcgtcggcgcgggggacttctactaccacggcct 186 ||||||||||||||||||| || |||||||||| || |||||| |||||||||||| Sbjct: 218 ggcggggtacccgtgcaaggccagcgtcggcgccggcgacttcgcctaccacggcct 274
>ref|XM_507258.1| PREDICTED Oryza sativa (japonica cultivar-group), P0493A04.40 mRNA Length = 994 Score = 165 bits (83), Expect = 6e-38 Identities = 154/177 (87%), Gaps = 3/177 (1%) Strand = Plus / Plus Query: 13 agccatggccaacgca---atgttgctccctgtcctcatctccttcctcgtcctgccctt 69 |||||||||||| ||| ||| ||||||| |||||| ||||||||||| | ||||| || Sbjct: 87 agccatggccaaggcagtgatgatgctccccgtcctcctctccttcctcctgctgccatt 146 Query: 70 ctccgccatggccctgacccaggacttctgcgccgccgacctgtcctgcagcgacacgcc 129 ||| ||||||| ||||| ||||| ||||||| |||||||||| |||||||||||||||| Sbjct: 147 ctcgtccatggcgctgacgcaggatttctgcgtcgccgacctgacctgcagcgacacgcc 206 Query: 130 ggcggggtacccgtgcaagaccggcgtcggcgcgggggacttctactaccacggcct 186 ||||||||||||||||||| || |||||||||| || |||||| |||||||||||| Sbjct: 207 ggcggggtacccgtgcaaggccagcgtcggcgccggcgacttcgcctaccacggcct 263
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 165 bits (83), Expect = 6e-38 Identities = 154/177 (87%), Gaps = 3/177 (1%) Strand = Plus / Minus Query: 13 agccatggccaacgca---atgttgctccctgtcctcatctccttcctcgtcctgccctt 69 |||||||||||| ||| ||| ||||||| |||||| ||||||||||| | ||||| || Sbjct: 22551706 agccatggccaaggcagtgatgatgctccccgtcctcctctccttcctcctgctgccatt 22551647 Query: 70 ctccgccatggccctgacccaggacttctgcgccgccgacctgtcctgcagcgacacgcc 129 ||| ||||||| ||||| ||||| ||||||| |||||||||| |||||||||||||||| Sbjct: 22551646 ctcgtccatggcgctgacgcaggatttctgcgtcgccgacctgacctgcagcgacacgcc 22551587 Query: 130 ggcggggtacccgtgcaagaccggcgtcggcgcgggggacttctactaccacggcct 186 ||||||||||||||||||| || |||||||||| || |||||| |||||||||||| Sbjct: 22551586 ggcggggtacccgtgcaaggccagcgtcggcgccggcgacttcgcctaccacggcct 22551530
>dbj|AP004707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0690E03 Length = 139924 Score = 165 bits (83), Expect = 6e-38 Identities = 154/177 (87%), Gaps = 3/177 (1%) Strand = Plus / Minus Query: 13 agccatggccaacgca---atgttgctccctgtcctcatctccttcctcgtcctgccctt 69 |||||||||||| ||| ||| ||||||| |||||| ||||||||||| | ||||| || Sbjct: 25207 agccatggccaaggcagtgatgatgctccccgtcctcctctccttcctcctgctgccatt 25148 Query: 70 ctccgccatggccctgacccaggacttctgcgccgccgacctgtcctgcagcgacacgcc 129 ||| ||||||| ||||| ||||| ||||||| |||||||||| |||||||||||||||| Sbjct: 25147 ctcgtccatggcgctgacgcaggatttctgcgtcgccgacctgacctgcagcgacacgcc 25088 Query: 130 ggcggggtacccgtgcaagaccggcgtcggcgcgggggacttctactaccacggcct 186 ||||||||||||||||||| || |||||||||| || |||||| |||||||||||| Sbjct: 25087 ggcggggtacccgtgcaaggccagcgtcggcgccggcgacttcgcctaccacggcct 25031
>dbj|AP004586.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0493A04 Length = 149367 Score = 165 bits (83), Expect = 6e-38 Identities = 154/177 (87%), Gaps = 3/177 (1%) Strand = Plus / Minus Query: 13 agccatggccaacgca---atgttgctccctgtcctcatctccttcctcgtcctgccctt 69 |||||||||||| ||| ||| ||||||| |||||| ||||||||||| | ||||| || Sbjct: 146634 agccatggccaaggcagtgatgatgctccccgtcctcctctccttcctcctgctgccatt 146575 Query: 70 ctccgccatggccctgacccaggacttctgcgccgccgacctgtcctgcagcgacacgcc 129 ||| ||||||| ||||| ||||| ||||||| |||||||||| |||||||||||||||| Sbjct: 146574 ctcgtccatggcgctgacgcaggatttctgcgtcgccgacctgacctgcagcgacacgcc 146515 Query: 130 ggcggggtacccgtgcaagaccggcgtcggcgcgggggacttctactaccacggcct 186 ||||||||||||||||||| || |||||||||| || |||||| |||||||||||| Sbjct: 146514 ggcggggtacccgtgcaaggccagcgtcggcgccggcgacttcgcctaccacggcct 146458
>dbj|AK104729.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C02, full insert sequence Length = 938 Score = 165 bits (83), Expect = 6e-38 Identities = 154/177 (87%), Gaps = 3/177 (1%) Strand = Plus / Plus Query: 13 agccatggccaacgca---atgttgctccctgtcctcatctccttcctcgtcctgccctt 69 |||||||||||| ||| ||| ||||||| |||||| ||||||||||| | ||||| || Sbjct: 98 agccatggccaaggcagtgatgatgctccccgtcctcctctccttcctcctgctgccatt 157 Query: 70 ctccgccatggccctgacccaggacttctgcgccgccgacctgtcctgcagcgacacgcc 129 ||| ||||||| ||||| ||||| ||||||| |||||||||| |||||||||||||||| Sbjct: 158 ctcgtccatggcgctgacgcaggatttctgcgtcgccgacctgacctgcagcgacacgcc 217 Query: 130 ggcggggtacccgtgcaagaccggcgtcggcgcgggggacttctactaccacggcct 186 ||||||||||||||||||| || |||||||||| || |||||| |||||||||||| Sbjct: 218 ggcggggtacccgtgcaaggccagcgtcggcgccggcgacttcgcctaccacggcct 274
>dbj|AK065284.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M08, full insert sequence Length = 994 Score = 165 bits (83), Expect = 6e-38 Identities = 154/177 (87%), Gaps = 3/177 (1%) Strand = Plus / Plus Query: 13 agccatggccaacgca---atgttgctccctgtcctcatctccttcctcgtcctgccctt 69 |||||||||||| ||| ||| ||||||| |||||| ||||||||||| | ||||| || Sbjct: 87 agccatggccaaggcagtgatgatgctccccgtcctcctctccttcctcctgctgccatt 146 Query: 70 ctccgccatggccctgacccaggacttctgcgccgccgacctgtcctgcagcgacacgcc 129 ||| ||||||| ||||| ||||| ||||||| |||||||||| |||||||||||||||| Sbjct: 147 ctcgtccatggcgctgacgcaggatttctgcgtcgccgacctgacctgcagcgacacgcc 206 Query: 130 ggcggggtacccgtgcaagaccggcgtcggcgcgggggacttctactaccacggcct 186 ||||||||||||||||||| || |||||||||| || |||||| |||||||||||| Sbjct: 207 ggcggggtacccgtgcaaggccagcgtcggcgccggcgacttcgcctaccacggcct 263
>gb|AF051156.1|AF051156 Oryza sativa germin-like protein (GLP110) mRNA, complete cds Length = 1004 Score = 165 bits (83), Expect = 6e-38 Identities = 154/177 (87%), Gaps = 3/177 (1%) Strand = Plus / Plus Query: 13 agccatggccaacgca---atgttgctccctgtcctcatctccttcctcgtcctgccctt 69 |||||||||||| ||| ||| ||||||| |||||| ||||||||||| | ||||| || Sbjct: 79 agccatggccaaggcagtgatgatgctccccgtcctcctctccttcctcctgctgccatt 138 Query: 70 ctccgccatggccctgacccaggacttctgcgccgccgacctgtcctgcagcgacacgcc 129 ||| ||||||| ||||| ||||| ||||||| |||||||||| |||||||||||||||| Sbjct: 139 ctcgtccatggcgctgacgcaggatttctgcgtcgccgacctgacctgcagcgacacgcc 198 Query: 130 ggcggggtacccgtgcaagaccggcgtcggcgcgggggacttctactaccacggcct 186 ||||||||||||||||||| || |||||||||| || |||||| |||||||||||| Sbjct: 199 ggcggggtacccgtgcaaggccagcgtcggcgccggcgacttcgcctaccacggcct 255
>gb|AF032975.1|AF032975 Oryza sativa germin-like protein 5 (GER5) mRNA, complete cds Length = 1030 Score = 165 bits (83), Expect = 6e-38 Identities = 154/177 (87%), Gaps = 3/177 (1%) Strand = Plus / Plus Query: 13 agccatggccaacgca---atgttgctccctgtcctcatctccttcctcgtcctgccctt 69 |||||||||||| ||| ||| ||||||| |||||| ||||||||||| | ||||| || Sbjct: 100 agccatggccaaggcagtgatgatgctccccgtcctcctctccttcctcctgctgccatt 159 Query: 70 ctccgccatggccctgacccaggacttctgcgccgccgacctgtcctgcagcgacacgcc 129 ||| ||||||| ||||| ||||| ||||||| |||||||||| |||||||||||||||| Sbjct: 160 ctcgtccatggcgctgacgcaggatttctgcgtcgccgacctgacctgcagcgacacgcc 219 Query: 130 ggcggggtacccgtgcaagaccggcgtcggcgcgggggacttctactaccacggcct 186 ||||||||||||||||||| || |||||||||| || |||||| |||||||||||| Sbjct: 220 ggcggggtacccgtgcaaggccagcgtcggcgccggcgacttcgcctaccacggcct 276
>dbj|AB010876.1| Oryza sativa OsGLP1 mRNA for germin-like protein 1, complete cds Length = 994 Score = 165 bits (83), Expect = 6e-38 Identities = 154/177 (87%), Gaps = 3/177 (1%) Strand = Plus / Plus Query: 13 agccatggccaacgca---atgttgctccctgtcctcatctccttcctcgtcctgccctt 69 |||||||||||| ||| ||| ||||||| |||||| ||||||||||| | ||||| || Sbjct: 99 agccatggccaaggcagtgatgatgctccccgtcctcctctccttcctcctgctgccatt 158 Query: 70 ctccgccatggccctgacccaggacttctgcgccgccgacctgtcctgcagcgacacgcc 129 ||| ||||||| ||||| ||||| ||||||| |||||||||| |||||||||||||||| Sbjct: 159 ctcgtccatggcgctgacgcaggatttctgcgtcgccgacctgacctgcagcgacacgcc 218 Query: 130 ggcggggtacccgtgcaagaccggcgtcggcgcgggggacttctactaccacggcct 186 ||||||||||||||||||| || |||||||||| || |||||| |||||||||||| Sbjct: 219 ggcggggtacccgtgcaaggccagcgtcggcgccggcgacttcgcctaccacggcct 275
>dbj|AB015593.1| Oryza sativa OsGLP1 gene for germin-like protein 1, complete cds Length = 642 Score = 163 bits (82), Expect = 2e-37 Identities = 136/154 (88%) Strand = Plus / Plus Query: 33 tgctccctgtcctcatctccttcctcgtcctgcccttctccgccatggccctgacccagg 92 ||||||| |||||| ||||||||||| | ||||| ||||| ||||||| ||||| |||| Sbjct: 20 tgctccccgtcctcctctccttcctcctgctgccattctcgtccatggcgctgacgcagg 79 Query: 93 acttctgcgccgccgacctgtcctgcagcgacacgccggcggggtacccgtgcaagaccg 152 | ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct: 80 atttctgcgtcgccgacctgacctgcagcgacacgccggcggggtacccgtgcaaggcca 139 Query: 153 gcgtcggcgcgggggacttctactaccacggcct 186 |||||||||| || |||||| |||||||||||| Sbjct: 140 gcgtcggcgccggcgacttcgcctaccacggcct 173
>gb|AY394010.1| Zea mays germin-like protein (glp1) gene, promoter region and complete cds Length = 2490 Score = 117 bits (59), Expect = 1e-23 Identities = 119/139 (85%) Strand = Plus / Plus Query: 48 tctccttcctcgtcctgcccttctccgccatggccctgacccaggacttctgcgccgccg 107 ||||||||||| | ||||||| || || | |||||||| ||||||||||||| ||||| Sbjct: 1486 tctccttcctcctgatgcccttggcctccctagccctgacgcaggacttctgcgtcgccg 1545 Query: 108 acctgtcctgcagcgacacgccggcggggtacccgtgcaagaccggcgtcggcgcggggg 167 ||||| ||||||||||||||||||||||||||||||||||| || ||||| ||| | Sbjct: 1546 acctgacctgcagcgacacgccggcggggtacccgtgcaagtccagcgtcaccgccaacg 1605 Query: 168 acttctactaccacggcct 186 ||||||||| ||||||||| Sbjct: 1606 acttctacttccacggcct 1624
>ref|XM_471594.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1299 Score = 77.8 bits (39), Expect = 1e-11 Identities = 63/71 (88%) Strand = Plus / Plus Query: 78 tggccctgacccaggacttctgcgccgccgacctgtcctgcagcgacacgccggcggggt 137 ||||||||| |||||||||||||| || ||||||| || || ||||||||||||| || | Sbjct: 62 tggccctgaaccaggacttctgcgtcggcgacctggcccgcggcgacacgccggccggct 121 Query: 138 acccgtgcaag 148 ||||||||||| Sbjct: 122 acccgtgcaag 132
>emb|AL731615.4|OSJN00256 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065J03, complete sequence Length = 144146 Score = 77.8 bits (39), Expect = 1e-11 Identities = 63/71 (88%) Strand = Plus / Plus Query: 78 tggccctgacccaggacttctgcgccgccgacctgtcctgcagcgacacgccggcggggt 137 ||||||||| |||||||||||||| || ||||||| || || ||||||||||||| || | Sbjct: 37464 tggccctgaaccaggacttctgcgtcggcgacctggcccgcggcgacacgccggccggct 37523 Query: 138 acccgtgcaag 148 ||||||||||| Sbjct: 37524 acccgtgcaag 37534
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 77.8 bits (39), Expect = 1e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 78 tggccctgacccaggacttctgcgccgccgacctgtcctgcagcgacacgccggcggggt 137 ||||||||| |||||||||||||| || ||||||| || || ||||||||||||| || | Sbjct: 12556761 tggccctgaaccaggacttctgcgtcggcgacctggcccgcggcgacacgccggccggct 12556702 Query: 138 acccgtgcaag 148 ||||||||||| Sbjct: 12556701 acccgtgcaag 12556691
>gb|AC007242.3| Homo sapiens BAC clone RP11-182H9 from 2, complete sequence Length = 112748 Score = 44.1 bits (22), Expect = 0.15 Identities = 22/22 (100%) Strand = Plus / Minus Query: 35 ctccctgtcctcatctccttcc 56 |||||||||||||||||||||| Sbjct: 68375 ctccctgtcctcatctccttcc 68354
>ref|XM_469352.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1017 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 ccaggacttctgcgccgccgacct 111 |||||||||||||| ||||||||| Sbjct: 238 ccaggacttctgcgtcgccgacct 261
>ref|XM_469350.1| Oryza sativa (japonica cultivar-group), mRNA Length = 690 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 ccaggacttctgcgccgccgacct 111 |||||||||||||| ||||||||| Sbjct: 102 ccaggacttctgcgtcgccgacct 125
>ref|NM_185523.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1878 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 ccatggccaacgcaatgttg 34 |||||||||||||||||||| Sbjct: 581 ccatggccaacgcaatgttg 600
>gb|AC125255.15| Mus musculus chromosome 5, clone RP24-332C17, complete sequence Length = 173258 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 ctgtcctcatctccttcctc 58 |||||||||||||||||||| Sbjct: 43657 ctgtcctcatctccttcctc 43676
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 ccaggacttctgcgccgccgacct 111 |||||||||||||| ||||||||| Sbjct: 27500440 ccaggacttctgcgtcgccgacct 27500417 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 ccaggacttctgcgccgccgacct 111 |||||||||||||| ||||||||| Sbjct: 27493120 ccaggacttctgcgtcgccgacct 27493097
>gb|AY424891.1| Toxoplasma gondii UDP-N-acetyl-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase T2 gene, complete cds Length = 10000 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 52 cttcctcgtcctgcccttctccgc 75 |||||||||||||||| ||||||| Sbjct: 8749 cttcctcgtcctgcccctctccgc 8726
>gb|AY136814.1| Toxoplasma gondii UDP-N-acetyl-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase T2 mRNA, complete cds Length = 2079 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 52 cttcctcgtcctgcccttctccgc 75 |||||||||||||||| ||||||| Sbjct: 1921 cttcctcgtcctgcccctctccgc 1898
>emb|AL645817.1| Human DNA sequence from clone RP1-2A2 on chromosome Xq21, complete sequence Length = 129249 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 48 tctccttcctcgtcctgcccttct 71 ||||||||||| |||||||||||| Sbjct: 59426 tctccttcctcctcctgcccttct 59449
>emb|AJ492381.1|LPE492381 Lolium perenne mRNA for oxalate oxidase 4 (oxO4 gene) Length = 828 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 caggacttctgcgccgccgacctg 112 ||||||||||||| |||||||||| Sbjct: 85 caggacttctgcgtcgccgacctg 108
>emb|AJ492380.1|LPE492380 Lolium perenne mRNA for oxalate oxidase 2 (oxO2 gene) Length = 867 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 caggacttctgcgccgccgacctg 112 ||||||||||||| |||||||||| Sbjct: 85 caggacttctgcgtcgccgacctg 108
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ccatggccaacgcaatgttg 34 |||||||||||||||||||| Sbjct: 29227850 ccatggccaacgcaatgttg 29227831
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 ccaggacttctgcgccgccgacct 111 |||||||||||||| ||||||||| Sbjct: 27591763 ccaggacttctgcgtcgccgacct 27591740 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 ccaggacttctgcgccgccgacct 111 |||||||||||||| ||||||||| Sbjct: 27584443 ccaggacttctgcgtcgccgacct 27584420
>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence, complete sequence Length = 123406 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 ccaggacttctgcgccgccgacct 111 |||||||||||||| ||||||||| Sbjct: 57394 ccaggacttctgcgtcgccgacct 57417 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 ccaggacttctgcgccgccgacct 111 |||||||||||||| ||||||||| Sbjct: 50074 ccaggacttctgcgtcgccgacct 50097
>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0597G07 Length = 152928 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ccatggccaacgcaatgttg 34 |||||||||||||||||||| Sbjct: 16539 ccatggccaacgcaatgttg 16520
>dbj|AP003816.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1165_F02 Length = 125993 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ccatggccaacgcaatgttg 34 |||||||||||||||||||| Sbjct: 67924 ccatggccaacgcaatgttg 67905
>emb|Z84816.1|HS2A2B Human DNA sequence from PAC 2A2 on chromosome X contains ESTs Length = 96355 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 48 tctccttcctcgtcctgcccttct 71 ||||||||||| |||||||||||| Sbjct: 36930 tctccttcctcctcctgcccttct 36907
>gb|AC127686.4| Mus musculus BAC clone RP24-188G23 from 3, complete sequence Length = 173474 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 ccttctccgccatggccctg 85 |||||||||||||||||||| Sbjct: 114913 ccttctccgccatggccctg 114932
>dbj|AK059872.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-F02, full insert sequence Length = 1028 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 ccaggacttctgcgccgccgacct 111 |||||||||||||| ||||||||| Sbjct: 249 ccaggacttctgcgtcgccgacct 272
>emb|AL773557.21| Mouse DNA sequence from clone RP23-391F9 on chromosome 2, complete sequence Length = 215139 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 tgacccaggacttctgcgcc 103 |||||||||||||||||||| Sbjct: 81991 tgacccaggacttctgcgcc 81972
>ref|XM_476095.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 693 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 88 ccaggacttctgcgccgccgacc 110 |||||||||||||| |||||||| Sbjct: 102 ccaggacttctgcgtcgccgacc 124
>gb|AC135427.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617H07, complete sequence Length = 114135 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 88 ccaggacttctgcgccgccgacc 110 |||||||||||||| |||||||| Sbjct: 111034 ccaggacttctgcgtcgccgacc 111056
>ref|XM_465232.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1967 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 ctccttcctcgtcctgccc 67 ||||||||||||||||||| Sbjct: 418 ctccttcctcgtcctgccc 400
>ref|XM_530464.1| PREDICTED: Pan troglodytes LOC459321 (LOC459321), mRNA Length = 762 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 67 cttctccgccatggccctg 85 ||||||||||||||||||| Sbjct: 363 cttctccgccatggccctg 345
>gb|AC132493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636E04, complete sequence Length = 141171 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 88 ccaggacttctgcgccgccgacc 110 |||||||||||||| |||||||| Sbjct: 41844 ccaggacttctgcgtcgccgacc 41866
>gb|AC123597.9| Mus musculus chromosome 8, clone RP23-134A7, complete sequence Length = 172297 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 5 cagtagcaagccatggcca 23 ||||||||||||||||||| Sbjct: 44035 cagtagcaagccatggcca 44053
>ref|XM_359763.1| Magnaporthe grisea 70-15 hypothetical protein (MG05014.4) partial mRNA Length = 684 Score = 38.2 bits (19), Expect = 9.2 Identities = 25/27 (92%) Strand = Plus / Minus Query: 21 ccaacgcaatgttgctccctgtcctca 47 ||||| ||||||||||| ||||||||| Sbjct: 361 ccaacccaatgttgctcactgtcctca 335
>ref|XM_419262.1| PREDICTED: Gallus gallus similar to Bromodomain and PHD finger-containing protein 3 (LOC421182), mRNA Length = 3378 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 tcatctccttcctcgtcct 63 ||||||||||||||||||| Sbjct: 2381 tcatctccttcctcgtcct 2363
>ref|XM_417812.1| PREDICTED: Gallus gallus similar to KIAA1522 protein (LOC419665), mRNA Length = 4241 Score = 38.2 bits (19), Expect = 9.2 Identities = 25/27 (92%) Strand = Plus / Minus Query: 40 tgtcctcatctccttcctcgtcctgcc 66 ||||||| ||||||||||| ||||||| Sbjct: 450 tgtcctcctctccttcctcttcctgcc 424
>ref|NM_015470.1| Homo sapiens RAB11 family interacting protein 5 (class I) (RAB11FIP5), mRNA Length = 4340 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 67 cttctccgccatggccctg 85 ||||||||||||||||||| Sbjct: 231 cttctccgccatggccctg 249
>ref|XM_548816.1| PREDICTED: Canis familiaris similar to olfactory receptor 523 (LOC491695), mRNA Length = 936 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 110 ctgtcctgcagcgacacgc 128 ||||||||||||||||||| Sbjct: 568 ctgtcctgcagcgacacgc 586
>gb|BC099902.1| Homo sapiens cDNA clone IMAGE:5264681, containing frame-shift errors Length = 4250 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 67 cttctccgccatggccctg 85 ||||||||||||||||||| Sbjct: 127 cttctccgccatggccctg 145
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 112 gtcctgcagcgacacgccg 130 ||||||||||||||||||| Sbjct: 816179 gtcctgcagcgacacgccg 816197
>gb|AC109542.6| Rattus norvegicus 1 BAC CH230-270O15 (Children's Hospital Oakland Research Institute) complete sequence Length = 246913 Score = 38.2 bits (19), Expect = 9.2 Identities = 25/27 (92%) Strand = Plus / Plus Query: 59 gtcctgcccttctccgccatggccctg 85 |||||||||||| || ||||||||||| Sbjct: 96830 gtcctgcccttcacctccatggccctg 96856
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 gcccttctccgccatggcc 82 ||||||||||||||||||| Sbjct: 2110072 gcccttctccgccatggcc 2110090
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29 Length = 339650 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 97 ctgcgccgccgacctgtcc 115 ||||||||||||||||||| Sbjct: 295667 ctgcgccgccgacctgtcc 295649
>gb|BC035013.1| Homo sapiens RAB11 family interacting protein 5 (class I), mRNA (cDNA clone MGC:33435 IMAGE:5269818), complete cds Length = 4279 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 67 cttctccgccatggccctg 85 ||||||||||||||||||| Sbjct: 158 cttctccgccatggccctg 176
>gb|AC124799.5| Homo sapiens chromosome 11, clone RP6-106F23, complete sequence Length = 161065 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 ctccctgtcctcatctcct 53 ||||||||||||||||||| Sbjct: 67372 ctccctgtcctcatctcct 67390
>gb|AC118344.2| Homo sapiens chromosome 19 clone CTC-425O23, complete sequence Length = 178335 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 ctccctgtcctcatctcct 53 ||||||||||||||||||| Sbjct: 119691 ctccctgtcctcatctcct 119709 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 ctccctgtcctcatctcct 53 ||||||||||||||||||| Sbjct: 119666 ctccctgtcctcatctcct 119684 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 ctccctgtcctcatctcct 53 ||||||||||||||||||| Sbjct: 119641 ctccctgtcctcatctcct 119659 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 ctccctgtcctcatctcct 53 ||||||||||||||||||| Sbjct: 119591 ctccctgtcctcatctcct 119609 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 ctccctgtcctcatctcct 53 ||||||||||||||||||| Sbjct: 119566 ctccctgtcctcatctcct 119584 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 ctccctgtcctcatctcct 53 ||||||||||||||||||| Sbjct: 119516 ctccctgtcctcatctcct 119534 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 ctccctgtcctcatctcct 53 ||||||||||||||||||| Sbjct: 119491 ctccctgtcctcatctcct 119509 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 ctccctgtcctcatctcct 53 ||||||||||||||||||| Sbjct: 119441 ctccctgtcctcatctcct 119459 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 ctccctgtcctcatctcct 53 ||||||||||||||||||| Sbjct: 119416 ctccctgtcctcatctcct 119434 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 ctccctgtcctcatctcct 53 ||||||||||||||||||| Sbjct: 119391 ctccctgtcctcatctcct 119409 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 ctccctgtcctcatctcct 53 ||||||||||||||||||| Sbjct: 119366 ctccctgtcctcatctcct 119384
>gb|AC016168.18| Homo sapiens chromosome 17, clone RP11-87G24, complete sequence Length = 193537 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 41 gtcctcatctccttcctcgtcct 63 |||||||||||||||||| |||| Sbjct: 169084 gtcctcatctccttcctcttcct 169106
>ref|XM_686207.1| PREDICTED: Danio rerio similar to c-Mpl binding protein isoform b (LOC562832), partial mRNA Length = 1934 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 48 tctccttcctcgtcctgcc 66 ||||||||||||||||||| Sbjct: 929 tctccttcctcgtcctgcc 911
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 76 catggccctgacccaggac 94 ||||||||||||||||||| Sbjct: 426843 catggccctgacccaggac 426861
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 148 gaccggcgtcggcgcgggg 166 ||||||||||||||||||| Sbjct: 4965286 gaccggcgtcggcgcgggg 4965304
>emb|CR523621.1| Gallus gallus finished cDNA, clone ChEST325o18 Length = 860 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 tcatctccttcctcgtcct 63 ||||||||||||||||||| Sbjct: 732 tcatctccttcctcgtcct 714
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 88 ccaggacttctgcgccgccgacc 110 |||||||||||||| |||||||| Sbjct: 5904270 ccaggacttctgcgtcgccgacc 5904292
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 ctccttcctcgtcctgccc 67 ||||||||||||||||||| Sbjct: 12463944 ctccttcctcgtcctgccc 12463926
>gb|AF334812.1|AF334812 Homo sapiens Rab11 interacting protein Rip11a mRNA, complete cds Length = 4340 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 67 cttctccgccatggccctg 85 ||||||||||||||||||| Sbjct: 231 cttctccgccatggccctg 249
>dbj|AB046580.1| Pseudogluconobacter saccharoketogenes adh gene for alcohol dehydrogenase, complete cds Length = 2913 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 140 ccgtgcaagaccggcgtcg 158 ||||||||||||||||||| Sbjct: 1334 ccgtgcaagaccggcgtcg 1352
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 97 ctgcgccgccgacctgtcc 115 ||||||||||||||||||| Sbjct: 8285904 ctgcgccgccgacctgtcc 8285922
>gb|AC010913.9| Homo sapiens BAC clone RP11-44N22 from 2, complete sequence Length = 209161 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 67 cttctccgccatggccctg 85 ||||||||||||||||||| Sbjct: 25059 cttctccgccatggccctg 25041
>dbj|AP004891.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0705A04 Length = 182468 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 ctccttcctcgtcctgccc 67 ||||||||||||||||||| Sbjct: 144081 ctccttcctcgtcctgccc 144063
>gb|AC005137.1|AC005137 Human Chromosome 11p14.3 PAC clone 6-106f23, complete sequence Length = 161190 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 ctccctgtcctcatctcct 53 ||||||||||||||||||| Sbjct: 67501 ctccctgtcctcatctcct 67519
>emb|AJ336352.1|HSA336352 Homo sapiens genomic sequence surrounding NotI site, clone NL4-DL14RS Length = 749 Score = 38.2 bits (19), Expect = 9.2 Identities = 28/31 (90%) Strand = Plus / Minus Query: 104 gccgacctgtcctgcagcgacacgccggcgg 134 |||||||||||| ||||||| ||||||||| Sbjct: 35 gccgacctgtcccgcagcgatccgccggcgg 5
>dbj|AK068924.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170E21, full insert sequence Length = 1967 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 ctccttcctcgtcctgccc 67 ||||||||||||||||||| Sbjct: 418 ctccttcctcgtcctgccc 400
>emb|AL355836.3|CNS05TCQ Human chromosome 14 DNA sequence BAC R-8L8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 166894 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 ctgtcctcatctccttcct 57 ||||||||||||||||||| Sbjct: 136752 ctgtcctcatctccttcct 136734
>gb|AC160647.1| Gallus gallus BAC clone CH261-14N23 from chromosome unknown, complete sequence Length = 237526 Score = 38.2 bits (19), Expect = 9.2 Identities = 25/27 (92%) Strand = Plus / Plus Query: 37 ccctgtcctcatctccttcctcgtcct 63 ||||||||||||| |||||||| |||| Sbjct: 139033 ccctgtcctcatccccttcctcctcct 139059
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 131 gcggggtacccgtgcaaga 149 ||||||||||||||||||| Sbjct: 1679442 gcggggtacccgtgcaaga 1679460
>dbj|AB020664.1| Homo sapiens mRNA for KIAA0857 protein, partial cds Length = 4341 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 67 cttctccgccatggccctg 85 ||||||||||||||||||| Sbjct: 232 cttctccgccatggccctg 250 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,291,632 Number of Sequences: 3902068 Number of extensions: 1291632 Number of successful extensions: 101318 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100205 Number of HSP's gapped (non-prelim): 1113 length of query: 186 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 164 effective length of database: 17,147,199,772 effective search space: 2812140762608 effective search space used: 2812140762608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)