>gb|AC025774.5| Homo sapiens chromosome 5 clone CTD-2292N2, complete sequence
          Length = 155092

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 12     cattgccaccccagagcacttct 34
              |||||||||||||||||||||||
Sbjct: 152786 cattgccaccccagagcacttct 152808

>gb|AC093218.2| Homo sapiens chromosome 5 clone CTD-2131P18, complete sequence
          Length = 105360

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 12    cattgccaccccagagcacttct 34
             |||||||||||||||||||||||
Sbjct: 29070 cattgccaccccagagcacttct 29092

>gb|AC116317.4| Homo sapiens BAC clone RP11-1406H17 from 4, complete sequence
          Length = 160943

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 80    ccccaggaacctgttaaaatg 100
             |||||||||||||||||||||
Sbjct: 26262 ccccaggaacctgttaaaatg 26282

>gb|AC134341.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0027N19, complete sequence
          Length = 141368

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    ccctcgcggcctcgcctcgc 67
             ||||||||||||||||||||
Sbjct: 61654 ccctcgcggcctcgcctcgc 61673

>gb|AC074257.5| Homo sapiens BAC clone RP11-796I2 from 7, complete sequence
          Length = 186047

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 109   cgccacagccatggcgatggccac 132
             |||||||||||||||| |||||||
Sbjct: 82740 cgccacagccatggcggtggccac 82717

>ref|XM_804918.1| Trypanosoma cruzi strain CL Brener ribonuclease H1
           (Tc00.1047053505939.60) partial mRNA
          Length = 972

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 222 tccaccgcctccttctccct 241
           ||||||||||||||||||||
Sbjct: 431 tccaccgcctccttctccct 412

>ref|XM_805147.1| Trypanosoma cruzi strain CL Brener ribonuclease H1
           (Tc00.1047053506351.40) partial mRNA
          Length = 972

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 222 tccaccgcctccttctccct 241
           ||||||||||||||||||||
Sbjct: 431 tccaccgcctccttctccct 412

>gb|AC125355.4| Mus musculus BAC clone RP23-183C14 from 12, complete sequence
          Length = 180423

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    cctccttctccctgtcttca 248
              ||||||||||||||||||||
Sbjct: 132890 cctccttctccctgtcttca 132871

>ref|XM_806298.1| Trypanosoma cruzi strain CL Brener separase
           (Tc00.1047053506363.159) partial mRNA
          Length = 502

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 219 ccttccaccgcctccttctc 238
           ||||||||||||||||||||
Sbjct: 296 ccttccaccgcctccttctc 277

>emb|CR388094.8| Zebrafish DNA sequence from clone CH211-214A5 in linkage group 16,
             complete sequence
          Length = 80756

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    caccccaggaacctgttaaa 97
             ||||||||||||||||||||
Sbjct: 78595 caccccaggaacctgttaaa 78614

>gb|AC093583.3| Homo sapiens BAC clone RP13-452N2 from 7, complete sequence
          Length = 178471

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 109    cgccacagccatggcgatggccac 132
              |||||||||||||||| |||||||
Sbjct: 128901 cgccacagccatggcggtggccac 128878

>emb|AL592308.3| Human DNA sequence from clone RP13-610P22 on chromosome 1, complete
            sequence
          Length = 170581

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   caggaacctgttaaaatggc 102
            ||||||||||||||||||||
Sbjct: 2217 caggaacctgttaaaatggc 2236

>emb|AL389887.7| Human DNA sequence from clone RP11-54F22 on chromosome Xq21.1-21.31
             Contains the 5' end of the RPS6KA6 gene for ribosomal
             protein S6 kinase (90kD) polypeptide 6 and a CpG island,
             complete sequence
          Length = 143220

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 236   ctccctgtcttcaggttctccacc 259
             ||||||||||||||||||| ||||
Sbjct: 69853 ctccctgtcttcaggttctgcacc 69876

>ref|NM_205332.3| Gallus gallus CCCTC-binding factor (zinc finger protein) (CTCF),
           mRNA
          Length = 4034

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 38  ctcctgccctccctcgcggc 57
           ||||||||||||||||||||
Sbjct: 562 ctcctgccctccctcgcggc 543

>emb|Z22605.1|GDCTCFPRA G.domesticus CTCF protein mRNA
          Length = 4252

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 38  ctcctgccctccctcgcggc 57
           ||||||||||||||||||||
Sbjct: 780 ctcctgccctccctcgcggc 761

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 48       ccctcgcggcctcgcctcgccgga 71
                ||||||||||||||||||| ||||
Sbjct: 21980907 ccctcgcggcctcgcctcgtcgga 21980930

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 48      ccctcgcggcctcgcctcgc 67
               ||||||||||||||||||||
Sbjct: 3740724 ccctcgcggcctcgcctcgc 3740743

>gb|AY035782.1| Rhipicephalus appendiculatus serine proteinase inhibitor serpin-4
           mRNA, complete cds
          Length = 1900

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 ccacagccatggcgatggcc 130
           ||||||||||||||||||||
Sbjct: 350 ccacagccatggcgatggcc 369

>dbj|AP003798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1005_H01
          Length = 128124

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 48    ccctcgcggcctcgcctcgccgga 71
             ||||||||||||||||||| ||||
Sbjct: 66656 ccctcgcggcctcgcctcgtcgga 66679

>emb|BX005242.6| Zebrafish DNA sequence from clone DKEY-67N17 in linkage group 16,
              complete sequence
          Length = 192177

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     caccccaggaacctgttaaa 97
              ||||||||||||||||||||
Sbjct: 129631 caccccaggaacctgttaaa 129650


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,346,031
Number of Sequences: 3902068
Number of extensions: 2346031
Number of successful extensions: 52749
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52673
Number of HSP's gapped (non-prelim): 76
length of query: 263
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 241
effective length of database: 17,147,199,772
effective search space: 4132475145052
effective search space used: 4132475145052
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)