ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet49c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY105945.1| Zea mays PCO115682 mRNA sequence 80 2e-12
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 52 5e-04
3dbj|AK105903.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 5e-04
4dbj|AK105778.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 5e-04
5dbj|AK104623.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 5e-04
6dbj|AK071989.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 5e-04
7dbj|AK061322.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 5e-04
8emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 52 5e-04
9emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4,... 52 5e-04
10ref|XM_474092.1| Oryza sativa (japonica cultivar-group), predic... 48 0.008
11emb|CR522871.1| Desulfotalea psychrophila LSv54, large plasmid 42 0.48
12gb|DQ397621.1| Cenarchaeum symbiosum clone C21E11, complete sequ... 42 0.48
13gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 38 7.4
14gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 38 7.4
15gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 38 7.4
16emb|AL928924.12| Mouse DNA sequence from clone RP23-307E15 on ch... 38 7.4 
>gb|AY105945.1| Zea mays PCO115682 mRNA sequence
          Length = 947

 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 55/60 (91%)
 Strand = Plus / Plus

                                                                       
Query: 60  gcaatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctcg 119
           |||||||||||||| ||| |||||||||||||||| || |||||||||| ||||||||||
Sbjct: 33  gcaatggagtccaccaagctctccgcgctgctggtgctcgccatgctcgcgctctcctcg 92
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 52.0 bits (26), Expect = 5e-04
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                          
Query: 61       caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 118
                ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 32828010 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 32827953
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>dbj|AK105903.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F11, full
           insert sequence
          Length = 1255

 Score = 52.0 bits (26), Expect = 5e-04
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 61  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 118
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 59  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 116
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>dbj|AK105778.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-F10, full
           insert sequence
          Length = 1242

 Score = 52.0 bits (26), Expect = 5e-04
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 61  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 118
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 59  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 116
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>dbj|AK104623.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-H11, full
           insert sequence
          Length = 1251

 Score = 52.0 bits (26), Expect = 5e-04
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 61  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 118
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 55  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 112
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>dbj|AK071989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094H13, full
           insert sequence
          Length = 1272

 Score = 52.0 bits (26), Expect = 5e-04
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 61  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 118
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 63  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 120
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>dbj|AK061322.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-F03, full
           insert sequence
          Length = 1257

 Score = 52.0 bits (26), Expect = 5e-04
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 61  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 118
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 61  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 118
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>emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0413E07, complete
             sequence
          Length = 76546

 Score = 52.0 bits (26), Expect = 5e-04
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 61    caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 118
             ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 23245 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 23188
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>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05,
             complete sequence
          Length = 142556

 Score = 52.0 bits (26), Expect = 5e-04
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 61    caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 118
             ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 90297 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 90240
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>ref|XM_474092.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 783

 Score = 48.1 bits (24), Expect = 0.008
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 63  atggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 118
           ||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 1   atggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 56
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>emb|CR522871.1| Desulfotalea psychrophila LSv54, large plasmid
          Length = 121587

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 88     tgctggttctggccatgctcg 108
              |||||||||||||||||||||
Sbjct: 104132 tgctggttctggccatgctcg 104112
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>gb|DQ397621.1| Cenarchaeum symbiosum clone C21E11, complete sequence
          Length = 41700

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 51    gtggttgctgcaatggagtcc 71
             |||||||||||||||||||||
Sbjct: 13074 gtggttgctgcaatggagtcc 13094
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 83      cgcgctgctggttctggcc 101
               |||||||||||||||||||
Sbjct: 2510469 cgcgctgctggttctggcc 2510487
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 103     tgctcgtgctctcctcgcc 121
               |||||||||||||||||||
Sbjct: 1413239 tgctcgtgctctcctcgcc 1413221
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 78      gtctccgcgctgctggttctggc 100
               ||||||||||||||||| |||||
Sbjct: 3522586 gtctccgcgctgctggtgctggc 3522564
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>emb|AL928924.12| Mouse DNA sequence from clone RP23-307E15 on chromosome 2, complete
             sequence
          Length = 195936

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 95    tctggccatgctcgtgctc 113
             |||||||||||||||||||
Sbjct: 11496 tctggccatgctcgtgctc 11478


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 833,162
Number of Sequences: 3902068
Number of extensions: 833162
Number of successful extensions: 55968
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55793
Number of HSP's gapped (non-prelim): 175
length of query: 155
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 133
effective length of database: 17,147,199,772
effective search space: 2280577569676
effective search space used: 2280577569676
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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