ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet49b10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK066310.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 7e-27
2ref|XM_474230.1| Oryza sativa (japonica cultivar-group), predic... 121 2e-24
3emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4,... 121 2e-24
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
5gb|AC020937.6| Homo sapiens chromosome 5 clone CTD-2299I21, comp... 48 0.021
6gb|AC008502.8| Homo sapiens chromosome 5 clone CTC-442G11, compl... 48 0.021
7emb|AL645726.22| Mouse DNA sequence from clone RP23-45M23 on chr... 42 1.3
8emb|AL929516.15| Zebrafish DNA sequence from clone CH211-10C20 i... 42 1.3
9gb|AC108424.14| Mus musculus chromosome 7, clone RP23-105A10, co... 40 5.1
10gb|AC161793.9| Mus musculus chromosome 7, clone RP23-80J7, compl... 40 5.1
11gb|AC100736.5| Mus musculus chromosome 15, clone RP24-336O6, com... 40 5.1
12gb|AC109169.13| Mus musculus chromosome 6, clone RP23-5D6, compl... 40 5.1
13emb|BX890610.8| Zebrafish DNA sequence from clone DKEY-122C9, co... 40 5.1
14gb|AC009498.4| Homo sapiens BAC clone RP11-507C18 from 2, comple... 40 5.1
15emb|AJ334525.1|HSA334525 Homo sapiens genomic sequence surroundi... 40 5.1
16emb|AJ330045.1|HSA330045 Homo sapiens genomic sequence surroundi... 40 5.1
17gb|AC162863.5| Mus musculus chromosome 15, clone RP23-276I6, com... 40 5.1
18gb|AC142099.3| Mus musculus BAC clone RP24-350H4 from 6, complet... 40 5.1 
>dbj|AK066310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063E15, full
            insert sequence
          Length = 3170

 Score =  129 bits (65), Expect = 7e-27
 Identities = 140/165 (84%)
 Strand = Plus / Plus

                                                                        
Query: 103  ctcacccaagcaaaatattgaaacagtcgtacccggaagcgcagttggtcatgatgctaa 162
            |||||||||||||| || ||| |||  | |||| |  ||| |||| || |||||| ||||
Sbjct: 1925 ctcacccaagcaaagtaatgacacaagcataccagagagctcagtggggcatgatcctaa 1984

                                                                        
Query: 163  aatcatacctgctgcttcagaatgtgggactgagatttcaatttcatctacacttgactc 222
            |||| ||  |||||||||||||||||| |||||||| ||||| || ||||||||||||||
Sbjct: 1985 aatcgtagttgctgcttcagaatgtggaactgagatatcaatctcctctacacttgactc 2044

                                                         
Query: 223  gccagatagatcagaggctgatggtggtgagattgtaatggagat 267
             || ||||||||||| ||||||||||| ||||||||| |||||||
Sbjct: 2045 accggatagatcagaagctgatggtggcgagattgtactggagat 2089
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>ref|XM_474230.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2682

 Score =  121 bits (61), Expect = 2e-24
 Identities = 139/165 (84%)
 Strand = Plus / Plus

                                                                        
Query: 103  ctcacccaagcaaaatattgaaacagtcgtacccggaagcgcagttggtcatgatgctaa 162
            |||||||||||||| || ||| |||  | |||| |  ||| |||| || |||||| ||||
Sbjct: 1761 ctcacccaagcaaagtaatgacacaagcataccagagagctcagtggggcatgatcctaa 1820

                                                                        
Query: 163  aatcatacctgctgcttcagaatgtgggactgagatttcaatttcatctacacttgactc 222
            |||| ||  | |||||||||||||||| |||||||| ||||| || ||||||||||||||
Sbjct: 1821 aatcgtagttcctgcttcagaatgtggaactgagatatcaatctcctctacacttgactc 1880

                                                         
Query: 223  gccagatagatcagaggctgatggtggtgagattgtaatggagat 267
             || ||||||||||| ||||||||||| ||||||||| |||||||
Sbjct: 1881 accggatagatcagaagctgatggtggcgagattgtactggagat 1925
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>emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K01,
             complete sequence
          Length = 163448

 Score =  121 bits (61), Expect = 2e-24
 Identities = 139/165 (84%)
 Strand = Plus / Plus

                                                                         
Query: 103   ctcacccaagcaaaatattgaaacagtcgtacccggaagcgcagttggtcatgatgctaa 162
             |||||||||||||| || ||| |||  | |||| |  ||| |||| || |||||| ||||
Sbjct: 89708 ctcacccaagcaaagtaatgacacaagcataccagagagctcagtggggcatgatcctaa 89767

                                                                         
Query: 163   aatcatacctgctgcttcagaatgtgggactgagatttcaatttcatctacacttgactc 222
             |||| ||  | |||||||||||||||| |||||||| ||||| || ||||||||||||||
Sbjct: 89768 aatcgtagttcctgcttcagaatgtggaactgagatatcaatctcctctacacttgactc 89827

                                                          
Query: 223   gccagatagatcagaggctgatggtggtgagattgtaatggagat 267
              || ||||||||||| ||||||||||| ||||||||| |||||||
Sbjct: 89828 accggatagatcagaagctgatggtggcgagattgtactggagat 89872
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  121 bits (61), Expect = 2e-24
 Identities = 139/165 (84%)
 Strand = Plus / Plus

                                                                            
Query: 103      ctcacccaagcaaaatattgaaacagtcgtacccggaagcgcagttggtcatgatgctaa 162
                |||||||||||||| || ||| |||  | |||| |  ||| |||| || |||||| ||||
Sbjct: 33877809 ctcacccaagcaaagtaatgacacaagcataccagagagctcagtggggcatgatcctaa 33877868

                                                                            
Query: 163      aatcatacctgctgcttcagaatgtgggactgagatttcaatttcatctacacttgactc 222
                |||| ||  | |||||||||||||||| |||||||| ||||| || ||||||||||||||
Sbjct: 33877869 aatcgtagttcctgcttcagaatgtggaactgagatatcaatctcctctacacttgactc 33877928

                                                             
Query: 223      gccagatagatcagaggctgatggtggtgagattgtaatggagat 267
                 || ||||||||||| ||||||||||| ||||||||| |||||||
Sbjct: 33877929 accggatagatcagaagctgatggtggcgagattgtactggagat 33877973
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>gb|AC020937.6| Homo sapiens chromosome 5 clone CTD-2299I21, complete sequence
          Length = 94161

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 166   catacctgctgcttcagaatgtgg 189
             ||||||||||||||||||||||||
Sbjct: 89833 catacctgctgcttcagaatgtgg 89810
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>gb|AC008502.8| Homo sapiens chromosome 5 clone CTC-442G11, complete sequence
          Length = 123495

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 166   catacctgctgcttcagaatgtgg 189
             ||||||||||||||||||||||||
Sbjct: 20135 catacctgctgcttcagaatgtgg 20112
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>emb|AL645726.22| Mouse DNA sequence from clone RP23-45M23 on chromosome 1, complete
              sequence
          Length = 231347

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 7      agagctgacttcagcagtcag 27
              |||||||||||||||||||||
Sbjct: 146749 agagctgacttcagcagtcag 146729
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>emb|AL929516.15| Zebrafish DNA sequence from clone CH211-10C20 in linkage group 1,
             complete sequence
          Length = 165892

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 156   atgctaaaatcatacctgctgcttc 180
             ||||||||||||||||||| |||||
Sbjct: 16532 atgctaaaatcatacctgcagcttc 16556
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>gb|AC108424.14| Mus musculus chromosome 7, clone RP23-105A10, complete sequence
          Length = 198191

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    gagaatgctgagaaagatac 318
              ||||||||||||||||||||
Sbjct: 185197 gagaatgctgagaaagatac 185178
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>gb|AC161793.9| Mus musculus chromosome 7, clone RP23-80J7, complete sequence
          Length = 268158

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   gagaatgctgagaaagatac 318
             ||||||||||||||||||||
Sbjct: 43167 gagaatgctgagaaagatac 43148
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>gb|AC100736.5| Mus musculus chromosome 15, clone RP24-336O6, complete sequence
          Length = 247275

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    tccaacagttcatcttttct 51
             ||||||||||||||||||||
Sbjct: 30914 tccaacagttcatcttttct 30895
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>gb|AC109169.13| Mus musculus chromosome 6, clone RP23-5D6, complete sequence
          Length = 204911

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   tgcttcagaatgtgggactg 194
             ||||||||||||||||||||
Sbjct: 53008 tgcttcagaatgtgggactg 52989
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>emb|BX890610.8| Zebrafish DNA sequence from clone DKEY-122C9, complete sequence
          Length = 189827

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   aagcaaaatattgaaacagt 129
             ||||||||||||||||||||
Sbjct: 46269 aagcaaaatattgaaacagt 46250
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>gb|AC009498.4| Homo sapiens BAC clone RP11-507C18 from 2, complete sequence
          Length = 199954

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    ccaagcaaaatattgaaaca 127
              ||||||||||||||||||||
Sbjct: 167915 ccaagcaaaatattgaaaca 167934
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>emb|AJ334525.1|HSA334525 Homo sapiens genomic sequence surrounding NotI site, clone
           NL1-HG10R
          Length = 783

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 236 gaggctgatggtggtgagat 255
           ||||||||||||||||||||
Sbjct: 667 gaggctgatggtggtgagat 686
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>emb|AJ330045.1|HSA330045 Homo sapiens genomic sequence surrounding NotI site, clone NR1-WI3R
          Length = 724

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 101 acctcacccaagcaaaatattgaa 124
           |||||||| |||||||||||||||
Sbjct: 558 acctcaccaaagcaaaatattgaa 535
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>gb|AC162863.5| Mus musculus chromosome 15, clone RP23-276I6, complete sequence
          Length = 199969

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    tccaacagttcatcttttct 51
             ||||||||||||||||||||
Sbjct: 44113 tccaacagttcatcttttct 44132
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>gb|AC142099.3| Mus musculus BAC clone RP24-350H4 from 6, complete sequence
          Length = 167731

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    tgcttcagaatgtgggactg 194
              ||||||||||||||||||||
Sbjct: 141993 tgcttcagaatgtgggactg 141974


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,422,305
Number of Sequences: 3902068
Number of extensions: 3422305
Number of successful extensions: 68269
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68201
Number of HSP's gapped (non-prelim): 64
length of query: 380
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 358
effective length of database: 17,147,199,772
effective search space: 6138697518376
effective search space used: 6138697518376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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