>ABDB_DROME (P09087) Homeobox protein abdominal-B (P3) (Infraabdominal 7)|
           (IAB-7) (PH189)
          Length = 493

 Score = 32.7 bits (73), Expect = 0.34
 Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
 Frame = +2

Query: 104 SAAGEQSYKILSTSSLKPQAVCSEP--KGIPS---SSSGATVPLS-HRHGPCSPAPTKKE 265
           SAA  QS +  STSS +P    S    +G PS   SSSGA+  LS    GPC+P P   E
Sbjct: 321 SAAARQSVEGTSTSSYEPPTYSSPGGLRGYPSENYSSSGASGGLSVGAVGPCTPNPGLHE 380

Query: 266 PT 271
            T
Sbjct: 381 WT 382

>BOSS_DROVI (Q24738) Protein bride of sevenless precursor|
          Length = 893

 Score = 32.3 bits (72), Expect = 0.44
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +2

Query: 62  LLLLSCI-ICHALIASAAGEQSYKILSTSSLKPQAVCSEPKGIPSSSSGAT 211
           L+ +SCI +CHA+ A+   ++S  +  T   KPQ V S    IP+++ G+T
Sbjct: 20  LITISCIDLCHAVGAATPTKKSPPVRIT---KPQPVSSTTTAIPTTNEGST 67

>HXD3_MOUSE (P09027) Homeobox protein Hox-D3 (Hox-4.1) (MH-19)|
          Length = 417

 Score = 31.2 bits (69), Expect = 0.99
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 5/28 (17%)
 Frame = +2

Query: 188 PSSSS-----GATVPLSHRHGPCSPAPT 256
           PSS+S      A +P +H HGPC P PT
Sbjct: 367 PSSASVDYSCAAQIPGNHHHGPCDPHPT 394

>LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alternatively spliced|
           PDZ-motif protein) (Protein cypher) (Protein oracle)
          Length = 723

 Score = 31.2 bits (69), Expect = 0.99
 Identities = 26/85 (30%), Positives = 38/85 (44%)
 Frame = +2

Query: 17  SEQGGAAMAFVSRLPLLLLSCIICHALIASAAGEQSYKILSTSSLKPQAVCSEPKGIPSS 196
           S Q  AA + ++  P L  +    HA  ASAAG  +  +    + +PQA    P    S 
Sbjct: 317 SAQSPAAASPIAASPTLATAAAT-HAAAASAAGPAASPV---ENPRPQASAYSPAAAASP 372

Query: 197 SSGATVPLSHRHGPCSPAPTKKEPT 271
           +  A    S+  GP +PAP  +  T
Sbjct: 373 APSAHT--SYSEGPAAPAPKPRVVT 395

>DGOD_ECOLI (Q6BF17) Galactonate dehydratase (EC 4.2.1.6)|
          Length = 382

 Score = 31.2 bits (69), Expect = 0.99
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 169 LRAQRDPVVVQWSHGAVEPQAWPVLAGAHQEGAYLLGAAP 288
           L+ + D  VV W    +E +A  V A  H+ G YL+G  P
Sbjct: 18  LKIETDEGVVGWGEPVIEGRARTVEAAVHELGDYLIGQDP 57

>HXD3_HUMAN (P31249) Homeobox protein Hox-D3 (Hox-4A)|
          Length = 416

 Score = 31.2 bits (69), Expect = 0.99
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 5/28 (17%)
 Frame = +2

Query: 188 PSSSS-----GATVPLSHRHGPCSPAPT 256
           PSS+S      A +P +H HGPC P PT
Sbjct: 366 PSSASVDYSCAAQIPGNHHHGPCDPHPT 393

>UBP32_HUMAN (Q8NFA0) Ubiquitin carboxyl-terminal hydrolase 32 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 32)
            (Ubiquitin-specific-processing protease 32)
            (Deubiquitinating enzyme 32) (NY-REN-60 antigen)
          Length = 1604

 Score = 31.2 bits (69), Expect = 0.99
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 104  SAAGEQSYKILSTSSLKPQAVCSEPKGIPSSS--SGATVPLSHRHGPCSPAPT 256
            S+AGE+   +  + S     + S PKG PSSS  SG + P S    P S   T
Sbjct: 1349 SSAGEEDVLLSKSPSSLSANIISSPKGSPSSSRKSGTSCPSSKNSSPNSSPRT 1401

>PNCB_XYLFT (Q87EC4) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)|
           (NAPRTase)
          Length = 394

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -1

Query: 379 HLDRLRLQDPAAAVVPGELPLDVAG 305
           HLDR  LQ  A++ VPGE+ LD+ G
Sbjct: 89  HLDRKYLQLRASSQVPGEIELDIRG 113

>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1|
          Length = 2173

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
 Frame = +2

Query: 155  PQAVCSEPKGIPSSSSGATVPLSHRHGPCS-PAPTKKEPTF*ERLRRDTLRAGYVQRKFS 331
            PQA C + +    +    T P+ H+  PCS P   K  P                    S
Sbjct: 1800 PQASCIKRQRATGNPGSLTAPIDHK--PCSAPLEPKSRP--------------------S 1837

Query: 332  RNHRGGGVLQSEAVKVPTELGSPQ 403
            RN R G V   E++    E  SPQ
Sbjct: 1838 RNQRWGAVRADESLTAIPEPASPQ 1861

>UBP6_HUMAN (P35125) Ubiquitin carboxyl-terminal hydrolase 6 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 6) (Ubiquitin-specific-processing
            protease 6) (Deubiquitinating enzyme 6) (Proto-oncogene
            TRE-2)
          Length = 1406

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 104  SAAGEQSYKILSTSSLKPQAVCSEPKGIPSSS--SGATVPLSHRHGPCSPAPT 256
            S+AG++   +  + S     + S PKG PSSS  SG + P S    P S   T
Sbjct: 1147 SSAGKEDMLLSKSPSSLSANISSSPKGSPSSSRKSGTSCPSSKNSSPNSSPRT 1199

>CHCH6_MOUSE (Q91VN4) Coiled-coil-helix-coiled-coil-helix domain-containing|
           protein 6
          Length = 273

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 32/94 (34%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
 Frame = +2

Query: 134 LSTSSLKPQAVCSEPK---------GIPSSSSGATVPLSHRHGPCSPAPTKKEPTF*ER- 283
           LS S +     CS+P          G  SS+   TVPL     P  PAPT   PT     
Sbjct: 30  LSESVVNRMKDCSQPSAGEQLVPGFGPSSSAPVPTVPLPAISVPTVPAPTTPVPTAPSSS 89

Query: 284 ---LRRDTLRAGYVQRKFSRNHRGGGVLQSEAVK 376
              L   T +      K      GGG LQS AVK
Sbjct: 90  VRGLPGGTCKGPLTDVKVPSAESGGG-LQSSAVK 122

>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1874

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 140 TSSLKPQAVCSEPKGI-PSSSSGATVPLSHRHGPCSPAPTKKEPT 271
           T+ LKP++  S P    PSSS+G+  P         PAP K  PT
Sbjct: 661 TTELKPES--SNPNNPNPSSSAGSNPPPKSSSSDNPPAPNKPTPT 703

>CITE1_MOUSE (P97769) Cbp/p300-interacting transactivator 1 (Melanocyte-specific|
           protein 1)
          Length = 203

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 170 SEPKGIPSSSSGATVPLSHRHGPCSPAPTKKEPTF 274
           ++  G+P+SSSG+T P+    G  +  P+ K P+F
Sbjct: 55  AKANGVPTSSSGSTSPI----GSPTATPSSKPPSF 85

>IF37_CAEEL (P30642) Putative eukaryotic translation initiation factor 3|
           subunit 7 (eIF-3 zeta) (eIF3d)
          Length = 570

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 293 DTLRAGYVQRKFSRNHRGGGVLQSEAVKVPTELGS 397
           DT++ GYV R  +R+ +   +L ++ VK PTE  S
Sbjct: 472 DTMKLGYVSRNNARSTQNHSILLTQYVK-PTEFAS 505

>GP46_LEIAM (P21978) Surface membrane glycoprotein GP46/M-2 precursor|
          Length = 476

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -2

Query: 114 PAALAMRAWQIMHDRRRSGSRETNAMAAPPCSLSQGRC 1
           PA + +  W  +  RRRS     N  AA  C L Q RC
Sbjct: 396 PALVCLSVWPAVGTRRRS-----NVRAAAVCRLGQRRC 428


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,472,842
Number of Sequences: 219361
Number of extensions: 961958
Number of successful extensions: 3592
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3591
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)