ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet48h07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC152000.3| Ornithorhynchus anatinus chromosome UNK clone OABb-501A1, complete sequence Length = 149165 Score = 48.1 bits (24), Expect = 0.015 Identities = 27/28 (96%) Strand = Plus / Plus Query: 210 aagaggatgaggaaggagaggcggagga 237 ||||||| |||||||||||||||||||| Sbjct: 29694 aagaggaggaggaaggagaggcggagga 29721
>gb|AC155718.4| Mus musculus 10 BAC RP24-217J7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 155643 Score = 46.1 bits (23), Expect = 0.058 Identities = 29/31 (93%) Strand = Plus / Plus Query: 207 aagaagaggatgaggaaggagaggcggagga 237 |||||||||| ||||||||||||| |||||| Sbjct: 152963 aagaagaggaagaggaaggagaggaggagga 152993
>gb|AC164171.5| Mus musculus 10 BAC RP24-574G7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 147660 Score = 46.1 bits (23), Expect = 0.058 Identities = 29/31 (93%) Strand = Plus / Minus Query: 207 aagaagaggatgaggaaggagaggcggagga 237 |||||||||| ||||||||||||| |||||| Sbjct: 125446 aagaagaggaagaggaaggagaggaggagga 125416
>gb|AC116825.23| Mus musculus chromosome 8, clone RP24-367H14, complete sequence Length = 182808 Score = 44.1 bits (22), Expect = 0.23 Identities = 25/26 (96%) Strand = Plus / Plus Query: 212 gaggatgaggaaggagaggcggagga 237 ||||||||||||||||||| |||||| Sbjct: 40188 gaggatgaggaaggagaggaggagga 40213
>ref|XM_464949.1| Oryza sativa (japonica cultivar-group), mRNA Length = 351 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Minus Query: 208 agaagaggatgaggaaggagag 229 |||||||||||||||||||||| Sbjct: 85 agaagaggatgaggaaggagag 64
>gb|AF016494.1| Fugu rubripes gamma-aminobutyric acid receptor beta subunit gene, partial cds; 55kd erythrocyte membrane protein (P55), synaptic vesicle-associated integral membrane protein (VAMP-1), procollagen C-proteinase enhancer protein (PCOLCE) genes, complete cds; and glucose repression mediator protein (GRMP) gene, partial cds Length = 66729 Score = 44.1 bits (22), Expect = 0.23 Identities = 25/26 (96%) Strand = Plus / Plus Query: 80 gttcccgcactgttctccttccttca 105 ||||||| |||||||||||||||||| Sbjct: 33044 gttcccgaactgttctccttccttca 33069
>gb|AC102686.7| Mus musculus chromosome 1, clone RP24-467J24, complete sequence Length = 156547 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Minus Query: 207 aagaagaggatgaggaaggaga 228 |||||||||||||||||||||| Sbjct: 8331 aagaagaggatgaggaaggaga 8310
>ref|XM_540883.2| PREDICTED: Canis familiaris similar to Akt-phosphorylation enhancer (LOC483762), mRNA Length = 4047 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 209 gaagaggatgaggaaggagagg 230 |||||||||||||||||||||| Sbjct: 148 gaagaggatgaggaaggagagg 169
>gb|AC114995.7| Mus musculus chromosome 8, clone RP23-171P5, complete sequence Length = 242745 Score = 44.1 bits (22), Expect = 0.23 Identities = 28/30 (93%) Strand = Plus / Minus Query: 209 gaagaggatgaggaaggagaggcggaggat 238 |||||||||||||||| ||||| ||||||| Sbjct: 220332 gaagaggatgaggaagaagagggggaggat 220303
>gb|AC102426.6| Mus musculus chromosome 1, clone RP24-88A10, complete sequence Length = 192016 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 207 aagaagaggatgaggaaggaga 228 |||||||||||||||||||||| Sbjct: 65203 aagaagaggatgaggaaggaga 65224
>emb|X81359.1|FRP55 F.rubripes p55 gene Length = 6085 Score = 44.1 bits (22), Expect = 0.23 Identities = 25/26 (96%) Strand = Plus / Plus Query: 80 gttcccgcactgttctccttccttca 105 ||||||| |||||||||||||||||| Sbjct: 885 gttcccgaactgttctccttccttca 910
>gb|AC160863.10| Mus musculus 10 BAC RP23-234F23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 189718 Score = 44.1 bits (22), Expect = 0.23 Identities = 28/30 (93%) Strand = Plus / Minus Query: 207 aagaagaggatgaggaaggagaggcggagg 236 |||||||||| ||||||||||||| ||||| Sbjct: 136806 aagaagaggaggaggaaggagaggaggagg 136777
>gb|AC158236.2| Mus musculus BAC clone RP23-132B15 from chromosome 8, complete sequence Length = 209957 Score = 44.1 bits (22), Expect = 0.23 Identities = 28/30 (93%) Strand = Plus / Plus Query: 209 gaagaggatgaggaaggagaggcggaggat 238 |||||||||||||||| ||||| ||||||| Sbjct: 188951 gaagaggatgaggaagaagagggggaggat 188980
>gb|AC153937.11| Mus musculus 10 BAC RP24-458J4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 195695 Score = 44.1 bits (22), Expect = 0.23 Identities = 28/30 (93%) Strand = Plus / Minus Query: 207 aagaagaggatgaggaaggagaggcggagg 236 |||||||||| ||||||||||||| ||||| Sbjct: 43063 aagaagaggaggaggaaggagaggaggagg 43034
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Minus Query: 208 agaagaggatgaggaaggagag 229 |||||||||||||||||||||| Sbjct: 10452485 agaagaggatgaggaaggagag 10452464
>gb|AF255560.1|AF255560 Notothenia coriiceps alpha tubulin mRNA, partial cds Length = 1062 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 209 gaagaggatgaggaaggagagg 230 |||||||||||||||||||||| Sbjct: 946 gaagaggatgaggaaggagagg 967
>dbj|AP005398.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0669G10 Length = 133372 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Minus Query: 208 agaagaggatgaggaaggagag 229 |||||||||||||||||||||| Sbjct: 94907 agaagaggatgaggaaggagag 94886
>dbj|AP005694.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0063E14 Length = 174415 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Minus Query: 208 agaagaggatgaggaaggagag 229 |||||||||||||||||||||| Sbjct: 33653 agaagaggatgaggaaggagag 33632
>gb|AC147500.6| Mus musculus BAC clone RP24-281C21 from chromosome 8, complete sequence Length = 185450 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 207 aagaagaggatgaggaaggaga 228 |||||||||||||||||||||| Sbjct: 146329 aagaagaggatgaggaaggaga 146350
>ref|NM_028317.1| Mus musculus RIKEN cDNA 2810030E01 gene (2810030E01Rik), mRNA Length = 2985 Score = 42.1 bits (21), Expect = 0.90 Identities = 27/29 (93%) Strand = Plus / Plus Query: 209 gaagaggatgaggaaggagaggcggagga 237 |||||||| ||||||||||||| |||||| Sbjct: 1080 gaagaggaggaggaaggagaggaggagga 1108
>gb|AC121297.20| Mus musculus chromosome 1, clone RP23-326H11, complete sequence Length = 207496 Score = 42.1 bits (21), Expect = 0.90 Identities = 27/29 (93%) Strand = Plus / Plus Query: 209 gaagaggatgaggaaggagaggcggagga 237 ||||||||||||||||| |||| |||||| Sbjct: 92746 gaagaggatgaggaaggggaggaggagga 92774
>gb|AC152409.8| Mus musculus chromosome 1, clone RP23-395C1, complete sequence Length = 191100 Score = 42.1 bits (21), Expect = 0.90 Identities = 27/29 (93%) Strand = Plus / Minus Query: 209 gaagaggatgaggaaggagaggcggagga 237 |||||||||||||||| ||||| |||||| Sbjct: 84871 gaagaggatgaggaagaagaggaggagga 84843
>gb|AC105256.7| Mus musculus BAC clone RP23-413O13 from chromosome 8, complete sequence Length = 210086 Score = 42.1 bits (21), Expect = 0.90 Identities = 21/21 (100%) Strand = Plus / Plus Query: 153 gcctccttctccctgtctcca 173 ||||||||||||||||||||| Sbjct: 170133 gcctccttctccctgtctcca 170153
>gb|AC121933.3| Mus musculus BAC clone RP24-206I11 from chromosome 8, complete sequence Length = 182816 Score = 42.1 bits (21), Expect = 0.90 Identities = 27/29 (93%) Strand = Plus / Minus Query: 209 gaagaggatgaggaaggagaggcggagga 237 |||||||| ||||||||||||| |||||| Sbjct: 55376 gaagaggaggaggaaggagaggaggagga 55348
>ref|XM_791403.1| PREDICTED: Strongylocentrotus purpuratus similar to CG7917-PA (LOC591856), partial mRNA Length = 1188 Score = 42.1 bits (21), Expect = 0.90 Identities = 27/29 (93%) Strand = Plus / Plus Query: 212 gaggatgaggaaggagaggcggaggattc 240 ||||||||||||| ||||| ||||||||| Sbjct: 940 gaggatgaggaagaagaggaggaggattc 968
>gb|AC135355.3| Mus musculus BAC clone RP24-495F22 from chromosome 6, complete sequence Length = 171057 Score = 42.1 bits (21), Expect = 0.90 Identities = 27/29 (93%) Strand = Plus / Minus Query: 209 gaagaggatgaggaaggagaggcggagga 237 |||||||| ||||||||||||| |||||| Sbjct: 44812 gaagaggaggaggaaggagaggaggagga 44784
>dbj|AK037681.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130036O06 product:unclassifiable, full insert sequence Length = 2376 Score = 42.1 bits (21), Expect = 0.90 Identities = 27/29 (93%) Strand = Plus / Minus Query: 209 gaagaggatgaggaaggagaggcggagga 237 |||||||| ||||||||||||| |||||| Sbjct: 413 gaagaggaggaggaaggagaggaggagga 385
>gb|AC154383.2| Mus musculus BAC clone RP23-38N16 from chromosome 16, complete sequence Length = 205926 Score = 42.1 bits (21), Expect = 0.90 Identities = 24/25 (96%) Strand = Plus / Minus Query: 206 caagaagaggatgaggaaggagagg 230 ||||||||||| ||||||||||||| Sbjct: 173920 caagaagaggaagaggaaggagagg 173896
>gb|AC116317.4| Homo sapiens BAC clone RP11-1406H17 from 4, complete sequence Length = 160943 Score = 42.1 bits (21), Expect = 0.90 Identities = 21/21 (100%) Strand = Plus / Plus Query: 23 ccccaggaacctgttaaaatg 43 ||||||||||||||||||||| Sbjct: 26262 ccccaggaacctgttaaaatg 26282
>gb|AF511330.1| Sus scrofa clone UMNp513 microsatellite sequence Length = 238 Score = 42.1 bits (21), Expect = 0.90 Identities = 24/25 (96%) Strand = Plus / Minus Query: 204 accaagaagaggatgaggaaggaga 228 |||| |||||||||||||||||||| Sbjct: 234 accaggaagaggatgaggaaggaga 210
>gb|AC153873.5| Mus musculus 10 BAC RP23-87M12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 207864 Score = 42.1 bits (21), Expect = 0.90 Identities = 27/29 (93%) Strand = Plus / Plus Query: 207 aagaagaggatgaggaaggagaggcggag 235 |||||||||| ||||||||||||| |||| Sbjct: 181599 aagaagaggaggaggaaggagaggaggag 181627
>dbj|AK111435.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-H12, full insert sequence Length = 831 Score = 42.1 bits (21), Expect = 0.90 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 ccttctccctgtctccaggtt 177 ||||||||||||||||||||| Sbjct: 781 ccttctccctgtctccaggtt 801
>gb|BC050860.1| Mus musculus RIKEN cDNA 2810030E01 gene, mRNA (cDNA clone MGC:59463 IMAGE:6331376), complete cds Length = 2985 Score = 42.1 bits (21), Expect = 0.90 Identities = 27/29 (93%) Strand = Plus / Plus Query: 209 gaagaggatgaggaaggagaggcggagga 237 |||||||| ||||||||||||| |||||| Sbjct: 1080 gaagaggaggaggaaggagaggaggagga 1108
>gb|AC165437.5| Mus musculus chromosome 15, clone RP23-285N11, complete sequence Length = 228289 Score = 42.1 bits (21), Expect = 0.90 Identities = 27/29 (93%) Strand = Plus / Plus Query: 209 gaagaggatgaggaaggagaggcggagga 237 |||||||| ||||||||||||| |||||| Sbjct: 155667 gaagaggaggaggaaggagaggaggagga 155695
>gb|AC144778.3| Mus musculus BAC clone RP23-278A22 from 6, complete sequence Length = 187115 Score = 42.1 bits (21), Expect = 0.90 Identities = 27/29 (93%) Strand = Plus / Minus Query: 209 gaagaggatgaggaaggagaggcggagga 237 |||||||| ||||||||||||| |||||| Sbjct: 147572 gaagaggaggaggaaggagaggaggagga 147544
>gb|AC166110.3| Mus musculus BAC clone RP23-130A4 from chromosome 17, complete sequence Length = 209815 Score = 42.1 bits (21), Expect = 0.90 Identities = 27/29 (93%) Strand = Plus / Minus Query: 209 gaagaggatgaggaaggagaggcggagga 237 ||||||||||||||||| |||| |||||| Sbjct: 59624 gaagaggatgaggaaggggaggaggagga 59596
>emb|AL928589.11| Mouse DNA sequence from clone RP23-350C1 on chromosome 2, complete sequence Length = 209053 Score = 42.1 bits (21), Expect = 0.90 Identities = 27/29 (93%) Strand = Plus / Minus Query: 209 gaagaggatgaggaaggagaggcggagga 237 |||||||| ||||||||||||| |||||| Sbjct: 172392 gaagaggaggaggaaggagaggaggagga 172364
>gb|AC153022.1| Mus musculus 6 BAC RP23-115M13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 201949 Score = 42.1 bits (21), Expect = 0.90 Identities = 27/29 (93%) Strand = Plus / Plus Query: 207 aagaagaggatgaggaaggagaggcggag 235 |||||||||| ||||||||||||| |||| Sbjct: 51254 aagaagaggaggaggaaggagaggaggag 51282
>gb|AC130201.3| Mus musculus BAC clone RP24-570A9 from chromosome 1, complete sequence Length = 147016 Score = 42.1 bits (21), Expect = 0.90 Identities = 24/25 (96%) Strand = Plus / Plus Query: 212 gaggatgaggaaggagaggcggagg 236 ||||||||||||||||||| ||||| Sbjct: 117778 gaggatgaggaaggagaggaggagg 117802
>gb|AC105173.10| Mus musculus chromosome 8, clone RP23-319J15, complete sequence Length = 186945 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 208 agaagaggatgaggaaggagaggc 231 ||||||||| |||||||||||||| Sbjct: 164290 agaagaggaagaggaaggagaggc 164313
>gb|AC167972.3| Mus musculus BAC clone RP24-73H24 from chromosome 13, complete sequence Length = 224330 Score = 40.1 bits (20), Expect = 3.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 209 gaagaggatgaggaaggagaggcggagg 236 |||||||| ||||||||||||| ||||| Sbjct: 146109 gaagaggaggaggaaggagaggaggagg 146082
>ref|NM_175294.2| Mus musculus nuclear casein kinase and cyclin-dependent kinase substrate 1 (Nucks1), mRNA Length = 2667 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ccaagaagaggatgaggaag 224 |||||||||||||||||||| Sbjct: 812 ccaagaagaggatgaggaag 831
>gb|AC164622.3| Mus musculus BAC clone CH36-287E13 from chromosome 13, complete sequence Length = 174691 Score = 40.1 bits (20), Expect = 3.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 209 gaagaggatgaggaaggagaggcggagg 236 |||||||| ||||||||||||| ||||| Sbjct: 117166 gaagaggaggaggaaggagaggaggagg 117193
>gb|AC163346.3| Mus musculus BAC clone RP23-370A2 from chromosome 6, complete sequence Length = 173936 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 aagaagaggatgaggaaggagagg 230 |||||||||| ||||||||||||| Sbjct: 4158 aagaagaggaggaggaaggagagg 4181
>gb|AC122418.4| Mus musculus BAC clone RP24-159E6 from chromosome 13, complete sequence Length = 221980 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 aagaagaggatgaggaaggagagg 230 |||||||||| ||||||||||||| Sbjct: 220905 aagaagaggaggaggaaggagagg 220882
>ref|XM_862106.1| PREDICTED: Canis familiaris hypothetical protein LOC610688 (LOC610688), mRNA Length = 312 Score = 40.1 bits (20), Expect = 3.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 210 aagaggatgaggaaggagaggcggagga 237 ||||||| ||||||||||||| |||||| Sbjct: 86 aagaggaggaggaaggagaggaggagga 113
>gb|AC145474.2| Rattus norvegicus chromosome 1 clone RP32-113N8 map q32, complete sequence Length = 137003 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 aagaagaggatgaggaaggagagg 230 |||||||||| ||||||||||||| Sbjct: 102956 aagaagaggaggaggaaggagagg 102979
>gb|AC126426.3| Mus musculus BAC clone RP24-291G13 from chromosome 13, complete sequence Length = 201051 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 aagaagaggatgaggaaggagagg 230 |||||||||||||||||| ||||| Sbjct: 122291 aagaagaggatgaggaagaagagg 122268
>gb|AC133648.3| Mus musculus BAC clone RP23-291B1 from chromosome 7, complete sequence Length = 207234 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 aagaagaggatgaggaaggagagg 230 |||||||||| ||||||||||||| Sbjct: 113521 aagaagaggaagaggaaggagagg 113498
>ref|XM_818292.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.26.0090) partial mRNA Length = 3492 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 gaagaggatgaggaaggaga 228 |||||||||||||||||||| Sbjct: 1984 gaagaggatgaggaaggaga 2003
>gb|AC138768.3| Mus musculus BAC clone RP24-465E14 from chromosome 18, complete sequence Length = 158065 Score = 40.1 bits (20), Expect = 3.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 210 aagaggatgaggaaggagaggcggagga 237 ||||||| ||||||||||||| |||||| Sbjct: 26241 aagaggaagaggaaggagaggaggagga 26268
>gb|AC122050.3| Mus musculus BAC clone RP24-457L7 from chromosome 6, complete sequence Length = 179078 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 aagaagaggatgaggaaggagagg 230 |||||||||| ||||||||||||| Sbjct: 55502 aagaagaggaggaggaaggagagg 55479
>ref|XM_804918.1| Trypanosoma cruzi strain CL Brener ribonuclease H1 (Tc00.1047053505939.60) partial mRNA Length = 972 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 tccaccgcctccttctccct 166 |||||||||||||||||||| Sbjct: 431 tccaccgcctccttctccct 412
>ref|XM_805147.1| Trypanosoma cruzi strain CL Brener ribonuclease H1 (Tc00.1047053506351.40) partial mRNA Length = 972 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 tccaccgcctccttctccct 166 |||||||||||||||||||| Sbjct: 431 tccaccgcctccttctccct 412
>gb|AC122043.4| Mus musculus BAC clone RP24-448C16 from chromosome 5, complete sequence Length = 187106 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 aagaagaggatgaggaaggagagg 230 |||||||||| ||||||||||||| Sbjct: 92445 aagaagaggaggaggaaggagagg 92468
>gb|AC126544.5| Homo sapiens chromosome 17, clone RP11-707O23, complete sequence Length = 172940 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 aagaagaggatgaggaaggagagg 230 |||||||||| ||||||||||||| Sbjct: 39894 aagaagaggaagaggaaggagagg 39917
>gb|AC122824.3| Mus musculus BAC clone RP23-206D5 from 13, complete sequence Length = 195655 Score = 40.1 bits (20), Expect = 3.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 210 aagaggatgaggaaggagaggcggagga 237 ||||||| ||||||||||||| |||||| Sbjct: 136084 aagaggaggaggaaggagaggaggagga 136057
>ref|XM_806298.1| Trypanosoma cruzi strain CL Brener separase (Tc00.1047053506363.159) partial mRNA Length = 502 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 ccttccaccgcctccttctc 163 |||||||||||||||||||| Sbjct: 296 ccttccaccgcctccttctc 277
>emb|CR388094.8| Zebrafish DNA sequence from clone CH211-214A5 in linkage group 16, complete sequence Length = 80756 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 caccccaggaacctgttaaa 40 |||||||||||||||||||| Sbjct: 78595 caccccaggaacctgttaaa 78614
>ref|XM_721979.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06422) partial mRNA Length = 7950 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 aagaagaggatgaggaaggagagg 230 |||||||||| ||||||||||||| Sbjct: 1232 aagaagaggaagaggaaggagagg 1255
>gb|AY376991.1| Litopenaeus vannamei microsatellite TUGAPv7-9.188 sequence Length = 517 Score = 40.1 bits (20), Expect = 3.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 208 agaagaggatgaggaaggagaggcggaggatt 239 ||||||||| ||||||||||| | |||||||| Sbjct: 464 agaagaggaggaggaaggagaagaggaggatt 495
>gb|AC148154.15| Medicago truncatula clone mth2-17a6, complete sequence Length = 138465 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 gaagaggatgaggaaggaga 228 |||||||||||||||||||| Sbjct: 63508 gaagaggatgaggaaggaga 63527
>emb|AL592308.3| Human DNA sequence from clone RP13-610P22 on chromosome 1, complete sequence Length = 170581 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 caggaacctgttaaaatggc 45 |||||||||||||||||||| Sbjct: 2217 caggaacctgttaaaatggc 2236
>emb|AL357503.12| Human DNA sequence from clone RP5-899C14 on chromosome 20 Contains the 3' end of the C20orf101 gene, complete sequence Length = 133288 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 gaagaggatgaggaaggaga 228 |||||||||||||||||||| Sbjct: 5430 gaagaggatgaggaaggaga 5411
>emb|AL356986.11| Human DNA sequence from clone RP11-395N6 on chromosome 1 Contains the 5' end of a known gene (FLJ10276), a glyceraldehyde-3-phosphate dehydrogenase (GAPD) pseudogene, a novel pseudogene, the 5' end of the ZBTB8 gene for zinc finger and BTB domain containing 8 and five CpG islands, complete sequence Length = 98390 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 aagaagaggatgaggaaggagagg 230 |||||||||| ||||||||||||| Sbjct: 70692 aagaagaggaagaggaaggagagg 70669
>emb|AL139254.23| Human DNA sequence from clone RP4-749H3 on chromosome 1p35.1-36 Contains a novel gene (LOC339505), complete sequence Length = 120455 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 tctccctgtctccaggttct 179 |||||||||||||||||||| Sbjct: 45405 tctccctgtctccaggttct 45386
>gb|AC090419.7| Homo sapiens chromosome 17, clone CTD-2107B16, complete sequence Length = 139585 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 aagaagaggatgaggaaggagagg 230 |||||||||| ||||||||||||| Sbjct: 60825 aagaagaggaagaggaaggagagg 60848
>emb|X65515.1|AVFIXABCX A.vinelandii genes fixA, fixB, fixC, fixX and ORF6 Length = 4394 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 agccgccttcggggatgaggtggg 270 |||||||||||||||| ||||||| Sbjct: 3557 agccgccttcggggatcaggtggg 3534
>emb|AL645943.19| Mouse DNA sequence from clone RP23-130E22 on chromosome 11 Contains a prohibitin (Phb) pseudogene and a novel gene, complete sequence Length = 213383 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 aagaagaggatgaggaaggagagg 230 |||||||||| ||||||||||||| Sbjct: 70346 aagaagaggaggaggaaggagagg 70369
>gb|AC157512.3| Mus musculus BAC clone RP24-399L6 from chromosome 9, complete sequence Length = 148736 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 ccaagaagaggatgaggaag 224 |||||||||||||||||||| Sbjct: 69848 ccaagaagaggatgaggaag 69829
>gb|AC093122.12| Homo sapiens 12 BAC RP11-317E2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 108125 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 aagaagaggatgaggaaggagagg 230 |||||||||||||||||| ||||| Sbjct: 59683 aagaagaggatgaggaagcagagg 59706
>gb|AC161266.2| Mus musculus BAC clone RP23-231B13 from chromosome 13, complete sequence Length = 190192 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 aagaagaggatgaggaaggagagg 230 |||||||||| ||||||||||||| Sbjct: 129535 aagaagaggaggaggaaggagagg 129558
>emb|BX088698.22| Mouse DNA sequence from clone RP23-309D15 on chromosome X, complete sequence Length = 184201 Score = 40.1 bits (20), Expect = 3.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 207 aagaagaggatgaggaaggagaggcggaggat 238 ||||||| ||||| |||| ||||||||||||| Sbjct: 11931 aagaagaagatgaagaagaagaggcggaggat 11900
>gb|AC156247.2| Xenopus tropicalis clone ISB1-181M9, complete sequence Length = 96628 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 aagaggatgaggaaggagag 229 |||||||||||||||||||| Sbjct: 13049 aagaggatgaggaaggagag 13030
>dbj|AK078816.1| Mus musculus 16 days embryo lung cDNA, RIKEN full-length enriched library, clone:8430423A01 product:NUCLEAR UBIQUITOUS CASEIN AND CYCLIN-DEPENDENT KINASES SUBSTRATE homolog [Rattus norvegicus], full insert sequence Length = 2667 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ccaagaagaggatgaggaag 224 |||||||||||||||||||| Sbjct: 812 ccaagaagaggatgaggaag 831
>gb|AC133521.3| Mus musculus BAC clone RP23-189F22 from chromosome 12, complete sequence Length = 219682 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 aagaagaggatgaggaaggagagg 230 |||||||||| ||||||||||||| Sbjct: 174130 aagaagaggaggaggaaggagagg 174107
>ref|XM_223992.3| PREDICTED: Rattus norvegicus sal-like 2 (Drosophila) (predicted) (Sall2_predicted), mRNA Length = 4012 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 aagaagaggatgaggaaggagagg 230 |||||||||||||||||| ||||| Sbjct: 2930 aagaagaggatgaggaagaagagg 2953
>emb|AL669967.12| Mouse DNA sequence from clone RP23-216M21 on chromosome X, complete sequence Length = 219583 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 47 accaccgccactacctccactgcc 70 ||||||||||||||| |||||||| Sbjct: 90390 accaccgccactaccaccactgcc 90413
>gb|AC155924.2| Mus musculus BAC clone RP24-366C10 from 12, complete sequence Length = 142540 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 aagaagaggatgaggaaggagagg 230 |||||||||| ||||||||||||| Sbjct: 110241 aagaagaggaggaggaaggagagg 110264
>gb|AC140442.4| Mus musculus BAC clone RP24-106P1 from 12, complete sequence Length = 153574 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 aagaagaggatgaggaaggagagg 230 |||||||||||||||||| ||||| Sbjct: 25548 aagaagaggatgaggaagaagagg 25525
>gb|AC132132.4| Mus musculus BAC clone RP23-235K2 from 8, complete sequence Length = 198321 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 gaagaggatgaggaaggaga 228 |||||||||||||||||||| Sbjct: 103813 gaagaggatgaggaaggaga 103832
>gb|AC154630.2| Mus musculus BAC clone RP23-319C8 from 9, complete sequence Length = 182834 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ccaagaagaggatgaggaag 224 |||||||||||||||||||| Sbjct: 23379 ccaagaagaggatgaggaag 23398
>gb|AC169186.4| Erinaceus europaeus, clone XX-29994857F23, complete sequence Length = 33803 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 aagaagaggatgaggaaggagagg 230 |||||||||| ||||||||||||| Sbjct: 13565 aagaagaggaagaggaaggagagg 13542
>emb|BX005242.6| Zebrafish DNA sequence from clone DKEY-67N17 in linkage group 16, complete sequence Length = 192177 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 caccccaggaacctgttaaa 40 |||||||||||||||||||| Sbjct: 129631 caccccaggaacctgttaaa 129650
>gb|AC005829.1|AC005829 Homo sapiens chromosome 17, clone hRPK.259_G_18, complete sequence Length = 170030 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 aagaagaggatgaggaaggagagg 230 |||||||||| ||||||||||||| Sbjct: 49961 aagaagaggaagaggaaggagagg 49984
>gb|AC174447.2| Mus musculus BAC clone RP23-377C21 from chromosome 9, complete sequence Length = 170748 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ccaagaagaggatgaggaag 224 |||||||||||||||||||| Sbjct: 117615 ccaagaagaggatgaggaag 117634
>gb|AC127691.4| Mus musculus BAC clone RP24-216M10 from 9, complete sequence Length = 153242 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 cctccttctccctgtctcca 173 |||||||||||||||||||| Sbjct: 54853 cctccttctccctgtctcca 54834
>gb|AC125102.4| Mus musculus BAC clone RP24-208N22 from 6, complete sequence Length = 163235 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 aagaggatgaggaaggagag 229 |||||||||||||||||||| Sbjct: 74253 aagaggatgaggaaggagag 74272
>gb|AC163040.5| Mus musculus BAC clone RP23-71C23 from chromosome 12, complete sequence Length = 235086 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 aagaagaggatgaggaaggagagg 230 |||||||||||||||||| ||||| Sbjct: 194345 aagaagaggatgaggaagaagagg 194322
>emb|AL772258.9| Mouse DNA sequence from clone RP23-337P24 on chromosome 2, complete sequence Length = 200480 Score = 40.1 bits (20), Expect = 3.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 209 gaagaggatgaggaaggagaggcggagg 236 |||||||| ||||||||||||| ||||| Sbjct: 40593 gaagaggaggaggaaggagaggaggagg 40620
>emb|AL928939.6| Mouse DNA sequence from clone RP23-294B13 on chromosome 2, complete sequence Length = 191291 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 aagaagaggatgaggaaggagagg 230 ||||||||||||||||||| |||| Sbjct: 105300 aagaagaggatgaggaaggggagg 105277
>gb|AC127032.8| Homo sapiens chromosome 17, clone RP11-162O14, complete sequence Length = 187685 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 aagaagaggatgaggaaggagagg 230 |||||||||| ||||||||||||| Sbjct: 76526 aagaagaggaagaggaaggagagg 76549
>emb|AL645928.9| Mouse DNA sequence from clone RP23-185J21 on chromosome 11, complete sequence Length = 158913 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 aagaagaggatgaggaaggagagg 230 |||||||||| ||||||||||||| Sbjct: 128281 aagaagaggaggaggaaggagagg 128258 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,530,004 Number of Sequences: 3902068 Number of extensions: 2530004 Number of successful extensions: 66709 Number of sequences better than 10.0: 93 Number of HSP's better than 10.0 without gapping: 93 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66526 Number of HSP's gapped (non-prelim): 183 length of query: 273 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 251 effective length of database: 17,147,199,772 effective search space: 4303947142772 effective search space used: 4303947142772 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
