ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet48g07 |
|---|---|
| Clone Library Name | barley_pub |
>PSBP_WHEAT (Q00434) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 258 Score = 80.1 bits (196), Expect = 1e-15 Identities = 41/55 (74%), Positives = 41/55 (74%) Frame = +1 Query: 46 MASTSCFLHQSTXXXXXXXXXXXXVGRTQLFVCKAHKNDEAASDAAVVTSRRAVL 210 MASTSCFLHQST VGRTQLFVCKA KNDEAASDAAVVTSRRA L Sbjct: 1 MASTSCFLHQSTARLAASARPAPAVGRTQLFVCKAQKNDEAASDAAVVTSRRAAL 55
>PSBP_CUCSA (Q9SLQ8) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (OEC23) Length = 263 Score = 34.7 bits (78), Expect = 0.070 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 4/59 (6%) Frame = +1 Query: 46 MASTSCFLHQSTXXXXXXXXXXXXVGRT----QLFVCKAHKNDEAASDAAVVTSRRAVL 210 MASTSCFLH QL VC+A K A + V SRR L Sbjct: 1 MASTSCFLHHHALTAAARSSSSPRQAALPKSPQLLVCRAQKQQPAQEEEGGVVSRRLAL 59
>PSBP1_TOBAC (Q7DM39) Oxygen-evolving enhancer protein 2-1, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 268 Score = 29.6 bits (65), Expect = 2.2 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 9/64 (14%) Frame = +1 Query: 46 MASTSCFLHQSTXXXXXXXXXXXXVGRTQL-------FVCKAHKNDEAASD--AAVVTSR 198 MAST CFLHQ + + VC+A K D +VV SR Sbjct: 1 MASTQCFLHQHALSSSAARTTSSVSSQRYVSSLKPNQLVCRAQKQSSPQEDDGNSVVVSR 60 Query: 199 RAVL 210 R L Sbjct: 61 RLAL 64
>PSBP_LYCES (P29795) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 258 Score = 29.6 bits (65), Expect = 2.2 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = +1 Query: 49 ASTSCFLHQ-STXXXXXXXXXXXXVGRTQLFVCKAHKNDEAASDAAVVTSRRAVL 210 AST CFLHQ + +C+A K D+ AS+AAV SRR L Sbjct: 3 ASTQCFLHQYHALRSSPARTSSVSSPKPNQLICRAQKQDD-ASNAAV--SRRLAL 54
>PSBP_PEA (P16059) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 259 Score = 29.6 bits (65), Expect = 2.2 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Frame = +1 Query: 46 MASTSCFLHQS---TXXXXXXXXXXXXVGRTQLFVCKAHKNDEAASDAAVVTSRRAV 207 MAST CFLH T + VCKA K D+ AVV+ R A+ Sbjct: 1 MASTQCFLHHQYAITTPTRTLSQRQVVTTKPNHIVCKAQKQDDVVD--AVVSRRLAL 55
>PSBP_SOLTU (P93566) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 260 Score = 29.3 bits (64), Expect = 2.9 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Frame = +1 Query: 49 ASTSCFLHQSTXXXXXXXXXXXXVG-RTQLFVCKAHKNDEAASDAAVVTSRRAV 207 AST CFLHQ + +C+A K D+A + + V+ R A+ Sbjct: 3 ASTQCFLHQYHALRSSPARTSSVPSPKPNQLICRAQKQDDANNTSNAVSRRLAL 56
>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 550 Score = 28.5 bits (62), Expect = 5.0 Identities = 12/17 (70%), Positives = 13/17 (76%) Frame = -3 Query: 106 GAPRQPGARWTGGGSRR 56 GAPR PG R GGG+RR Sbjct: 525 GAPRGPGGRPPGGGNRR 541
>PSBP_SPIOL (P12302) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 267 Score = 28.5 bits (62), Expect = 5.0 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 7/57 (12%) Frame = +1 Query: 46 MASTSCFLHQSTXXXXXXXXXXXXVGRTQL-------FVCKAHKNDEAASDAAVVTS 195 MAST+CFLH R Q VCKA K D+ ++A V+ S Sbjct: 1 MASTACFLHHHAAISSPAAGRGSAAQRYQAVSIKPNQIVCKAQKQDD--NEANVLNS 55
>ZO1_MOUSE (P39447) Tight junction protein ZO-1 (Zonula occludens 1 protein)| (Zona occludens 1 protein) (Tight junction protein 1) Length = 1745 Score = 27.7 bits (60), Expect = 8.5 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Frame = +3 Query: 66 PPPVHRA-PGCLGAPCSRRRAHPAVRLQG 149 PP H + PGCLGAP S AH +R +G Sbjct: 963 PPTSHASQPGCLGAP-SAEAAHVGLRGEG 990
>PSBP2_TOBAC (P18212) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 265 Score = 27.7 bits (60), Expect = 8.5 Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 6/61 (9%) Frame = +1 Query: 46 MASTSCFLHQSTXXXXXXXXXXXXV----GRTQLFVCKAHKNDEAASD--AAVVTSRRAV 207 MAST CFLH + QL VC+A K D +V SRR Sbjct: 1 MASTQCFLHHHALSTPARTPLVRSIVPSLKPNQLLVCRAQKQSAPQEDNVNSVSVSRRLA 60 Query: 208 L 210 L Sbjct: 61 L 61 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,164,750 Number of Sequences: 219361 Number of extensions: 414454 Number of successful extensions: 1327 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1274 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1324 length of database: 80,573,946 effective HSP length: 45 effective length of database: 70,702,701 effective search space used: 1696864824 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
