ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet48f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATM_DEBHA (Q6BV76) Serine/threonine-protein kinase TEL1 (EC 2.7.... 29 3.8
2KSP1_YEAST (P38691) Serine/threonine-protein kinase KSP1 (EC 2.7... 29 3.8
3AVT3_YEAST (P36062) Vacuolar amino acid transporter 3 28 8.6

>ATM_DEBHA (Q6BV76) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)|
            (DNA-damage checkpoint kinase TEL1) (Telomere length
            regulation protein 1) (ATM homolog)
          Length = 2948

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 36   DQARSHSFLAHFTSSSLMSSCFEASAMADLIPGLPEEVARECLIRV 173
            D ++    +   ++S L+S+ +E+    DLI GLPEE + E  I +
Sbjct: 1919 DVSKHEKHIDWLSNSRLLSNIYESIDNEDLIFGLPEETSLEYAINM 1964



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>KSP1_YEAST (P38691) Serine/threonine-protein kinase KSP1 (EC 2.7.11.1)|
          Length = 1029

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 202 RRTAGSWSNPTRMRHSLATSSGNPGIRSAIADASKQLL 89
           RR++ + SNP  M  +L   S +PG +S+     K LL
Sbjct: 881 RRSSANESNPLHMNKALEKLSSSPGAKSSFVGFPKPLL 918



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>AVT3_YEAST (P36062) Vacuolar amino acid transporter 3|
          Length = 692

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 179 EPHPYEALPRHLLRQPRNQV 120
           EPH  +A+ RHL+R P N +
Sbjct: 103 EPHVVDAVARHLIRNPSNSL 122


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,395,269
Number of Sequences: 219361
Number of extensions: 356985
Number of successful extensions: 1241
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 80,573,946
effective HSP length: 44
effective length of database: 70,922,062
effective search space used: 1702129488
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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