ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet48f04 |
|---|---|
| Clone Library Name | barley_pub |
>ABDB_DROME (P09087) Homeobox protein abdominal-B (P3) (Infraabdominal 7)| (IAB-7) (PH189) Length = 493 Score = 33.1 bits (74), Expect = 0.35 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Frame = +3 Query: 105 SAAGEQSYKILSTSSLKPQAVCSEP--KGIPS---SSSGATVPLN-HRHGPCSPAPTKKE 266 SAA QS + STSS +P S +G PS SSSGA+ L+ GPC+P P E Sbjct: 321 SAAARQSVEGTSTSSYEPPTYSSPGGLRGYPSENYSSSGASGGLSVGAVGPCTPNPGLHE 380 Query: 267 PTFEERLRR 293 T + +R+ Sbjct: 381 WTGQVSVRK 389
>HXD3_HUMAN (P31249) Homeobox protein Hox-D3 (Hox-4A)| Length = 416 Score = 33.1 bits (74), Expect = 0.35 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 5/28 (17%) Frame = +3 Query: 189 PSSSS-----GATVPLNHRHGPCSPAPT 257 PSS+S A +P NH HGPC P PT Sbjct: 366 PSSASVDYSCAAQIPGNHHHGPCDPHPT 393
>HXD3_MOUSE (P09027) Homeobox protein Hox-D3 (Hox-4.1) (MH-19)| Length = 417 Score = 33.1 bits (74), Expect = 0.35 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 5/28 (17%) Frame = +3 Query: 189 PSSSS-----GATVPLNHRHGPCSPAPT 257 PSS+S A +P NH HGPC P PT Sbjct: 367 PSSASVDYSCAAQIPGNHHHGPCDPHPT 394
>BOSS_DROVI (Q24738) Protein bride of sevenless precursor| Length = 893 Score = 32.3 bits (72), Expect = 0.59 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Frame = +3 Query: 63 LLLLSCI-ICHALIASAAGEQSYKILSTSSLKPQAVCSEPKGIPSSSSGAT 212 L+ +SCI +CHA+ A+ ++S + T KPQ V S IP+++ G+T Sbjct: 20 LITISCIDLCHAVGAATPTKKSPPVRIT---KPQPVSSTTTAIPTTNEGST 67
>YJF1_YEAST (P47046) Hypothetical 91.3 kDa protein in TDH1-MTR4 intergenic| region Length = 822 Score = 31.2 bits (69), Expect = 1.3 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 3/84 (3%) Frame = +3 Query: 180 KGIPSSSSGATVPLNHRHGPCSPAPTKKEPT---FEERLRRDTLRAGYVQRKFSRNHRGG 350 K I S + + + H+ GP S + K+P+ F + + ++ G + ++ RN Sbjct: 217 KTISSDENSNSSVIRHKLGPISTSKCPKKPSHSHFSKLKKYNSFFLGPKENRYKRN---- 272 Query: 351 GVLQSEAVKVPTELGSPQDTLEYV 422 +A KVPTE S + +YV Sbjct: 273 ---TQQATKVPTEKKSNHRSSQYV 293
>ECM21_YEAST (P38167) Extracellular matrix protein 21| Length = 1117 Score = 30.8 bits (68), Expect = 1.7 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +3 Query: 165 VCSEPKGIPSSSSGATVPLNHRHG-PCSPAPTKKEPTFEERLRRDTLR 305 + S P SS S + LN G P P+PTKK + ++R R T+R Sbjct: 4 ITSRPVAKNSSHSLSETDLNQSKGQPFQPSPTKKLGSMQQRRRSSTIR 51
>PNCB_XYLFT (Q87EC4) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 394 Score = 30.8 bits (68), Expect = 1.7 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = -1 Query: 380 HLDRLRLQDXAAAVVPGELPLDVAG 306 HLDR LQ A++ VPGE+ LD+ G Sbjct: 89 HLDRKYLQLRASSQVPGEIELDIRG 113
>TAF10_HUMAN (Q12962) Transcription initiation factor TFIID subunit 10| (Transcription initiation factor TFIID 30 kDa subunit) (TAF(II)30) (TAFII-30) (TAFII30) (STAF28) Length = 218 Score = 30.4 bits (67), Expect = 2.3 Identities = 27/89 (30%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Frame = +2 Query: 206 SHGAVEPQAWPVLAGAHQEGAYLRGAAPP*HAPSRLRPAEVLQEXXXXXXXAVGGGQGAD 385 S +P+A P A A G APP AP+ L + + A G G GA Sbjct: 4 SGSGADPEAAPASA------ASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAA 57 Query: 386 RAGFSP-----GHAGVRHNRRRRLAGGAA 457 G P G R AGGAA Sbjct: 58 AGGTGPLAARAGEPAERRGAAPVSAGGAA 86
>SDHD_BACAN (Q81S85) Probable D-serine dehydratase (EC 4.3.1.18) (D-serine| deaminase) (DSD) Length = 446 Score = 30.4 bits (67), Expect = 2.3 Identities = 19/61 (31%), Positives = 29/61 (47%) Frame = +3 Query: 243 SPAPTKKEPTFEERLRRDTLRAGYVQRKFSRNHRGGGVLQSEAVKVPTELGSPQDTLEYV 422 SP + EERL+R A Y+ + F GG+++S VK+P+ S + E Sbjct: 40 SPLSEENVKDAEERLKRF---ASYIAKVFPETKDTGGIIESPLVKIPSMKQSLEKNYEQP 96 Query: 423 I 425 I Sbjct: 97 I 97
>CHCH6_MOUSE (Q91VN4) Coiled-coil-helix-coiled-coil-helix domain-containing| protein 6 Length = 273 Score = 30.4 bits (67), Expect = 2.3 Identities = 32/94 (34%), Positives = 36/94 (38%), Gaps = 13/94 (13%) Frame = +3 Query: 135 LSTSSLKPQAVCSEPK---------GIPSSSSGATVPLNHRHGPCSPAPTKKEPTFEER- 284 LS S + CS+P G SS+ TVPL P PAPT PT Sbjct: 30 LSESVVNRMKDCSQPSAGEQLVPGFGPSSSAPVPTVPLPAISVPTVPAPTTPVPTAPSSS 89 Query: 285 ---LRRDTLRAGYVQRKFSRNHRGGGVLQSEAVK 377 L T + K GGG LQS AVK Sbjct: 90 VRGLPGGTCKGPLTDVKVPSAESGGG-LQSSAVK 122
>UBP32_HUMAN (Q8NFA0) Ubiquitin carboxyl-terminal hydrolase 32 (EC 3.1.2.15)| (Ubiquitin thioesterase 32) (Ubiquitin-specific-processing protease 32) (Deubiquitinating enzyme 32) (NY-REN-60 antigen) Length = 1604 Score = 30.0 bits (66), Expect = 2.9 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Frame = +3 Query: 105 SAAGEQSYKILSTSSLKPQAVCSEPKGIPSSS--SGATVPLNHRHGPCSPAPT 257 S+AGE+ + + S + S PKG PSSS SG + P + P S T Sbjct: 1349 SSAGEEDVLLSKSPSSLSANIISSPKGSPSSSRKSGTSCPSSKNSSPNSSPRT 1401
>CITE1_MOUSE (P97769) Cbp/p300-interacting transactivator 1 (Melanocyte-specific| protein 1) Length = 203 Score = 30.0 bits (66), Expect = 2.9 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%) Frame = +3 Query: 171 SEPKGIPSSSSGATVPLNHRHGPCSPAPTKKEPTFEERLRRDTLRAGYVQRKFSRNHRGG 350 ++ G+P+SSSG+T P+ G + P+ K P+F L A +K + ++G Sbjct: 55 AKANGVPTSSSGSTSPI----GSPTATPSSKPPSFNLH-PTPHLMASMQLQKLNSQYQGA 109 Query: 351 GVLQSEAVK---VPTELGSPQDTLEYVITVGVGSP 446 + A+ +P E Q+ + + VG GSP Sbjct: 110 AATAAAALTGAGLPGEEEPMQNWVTAPLVVG-GSP 143
>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1| Length = 2173 Score = 30.0 bits (66), Expect = 2.9 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 1/84 (1%) Frame = +3 Query: 156 PQAVCSEPKGIPSSSSGATVPLNHRHGPCS-PAPTKKEPTFEERLRRDTLRAGYVQRKFS 332 PQA C + + + T P++H+ PCS P K P S Sbjct: 1800 PQASCIKRQRATGNPGSLTAPIDHK--PCSAPLEPKSRP--------------------S 1837 Query: 333 RNHRGGGVLQSEAVKVPTELGSPQ 404 RN R G V E++ E SPQ Sbjct: 1838 RNQRWGAVRADESLTAIPEPASPQ 1861
>HXA3_HETFR (Q9IA21) Homeobox protein Hox-A3| Length = 410 Score = 29.6 bits (65), Expect = 3.8 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = +3 Query: 177 PKGIPSSSSGATVPLNHRHGPCSPAPT 257 P G + + NH HGPC P PT Sbjct: 361 PSGNMDYNGAGPMTSNHHHGPCDPHPT 387
>HXD3_CHICK (O93353) Homeobox protein Hox-D3| Length = 413 Score = 28.9 bits (63), Expect = 6.6 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%) Frame = +3 Query: 171 SEPKGIPSSSSGA-TVPLNHRHGPCSPAPTKKEPT 272 S P SGA + NH HGPC P PT + T Sbjct: 361 SHPPSANMDYSGAGPMGNNHHHGPCDPHPTYTDLT 395
>HXA3_CHICK (Q7T3J5) Homeobox protein Hox-A3| Length = 413 Score = 28.9 bits (63), Expect = 6.6 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%) Frame = +3 Query: 171 SEPKGIPSSSSGA-TVPLNHRHGPCSPAPTKKEPT 272 S P SGA + NH HGPC P PT + T Sbjct: 361 SHPPSANMDYSGAGPMGNNHHHGPCDPHPTYTDLT 395
>PMPB_CHLTR (O84418) Probable outer membrane protein pmpB precursor| (Polymorphic membrane protein B) Length = 1754 Score = 28.9 bits (63), Expect = 6.6 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 2/92 (2%) Frame = +3 Query: 102 ASAAGEQSYKILSTSSLKPQAVCSEPKGIPSSSSGATVPLNHRHGPCSPAPTKKEPTFEE 281 A A + + +TS+ + V S PSSS+ +++ L SPA + KE T + Sbjct: 638 ADTAEQPAAASAATSTPESAPVVSTALSTPSSSTVSSLTLLAASSQASPATSNKE-TQDP 696 Query: 282 RLRRDTLRAGYVQRKFSRN--HRGGGVLQSEA 371 D L V S+N +GGG+ +A Sbjct: 697 NADTDLLIDYVVDTTISKNTAKKGGGIYAKKA 728
>SNTA1_MOUSE (Q61234) Alpha-1-syntrophin (59 kDa dystrophin-associated protein| A1, acidic component 1) (Syntrophin 1) Length = 503 Score = 28.9 bits (63), Expect = 6.6 Identities = 19/49 (38%), Positives = 21/49 (42%) Frame = +2 Query: 248 GAHQEGAYLRGAAPP*HAPSRLRPAEVLQEXXXXXXXAVGGGQGADRAG 394 G E A L GAA P AP +L A +LQ A GG G G Sbjct: 50 GPEPEPAQLNGAAEPGAAPPQLPEALLLQRRRVTVRKADAGGLGISIKG 98
>SNTA1_HUMAN (Q13424) Alpha-1-syntrophin (59 kDa dystrophin-associated protein| A1, acidic component 1) (Pro-TGF-alpha cytoplasmic domain-interacting protein 1) (TACIP1) (Syntrophin 1) Length = 505 Score = 28.9 bits (63), Expect = 6.6 Identities = 25/76 (32%), Positives = 30/76 (39%) Frame = +2 Query: 167 LLRAQRDPVVVQWSHGAVEPQAWPVLAGAHQEGAYLRGAAPP*HAPSRLRPAEVLQEXXX 346 LL D + V + G P+ A QE A L GAA P P +L A +LQ Sbjct: 32 LLSLAEDVLTVSPADGDPGPEPG---APREQEPAQLNGAAEPGAGPPQLPEALLLQRRRV 88 Query: 347 XXXXAVGGGQGADRAG 394 A GG G G Sbjct: 89 TVRKADAGGLGISIKG 104
>CXA12_RAT (Q80XF7) Gap junction alpha-12 protein (Connexin-47) (Cx47)| Length = 440 Score = 28.5 bits (62), Expect = 8.6 Identities = 29/91 (31%), Positives = 34/91 (37%) Frame = +2 Query: 164 RLLRAQRDPVVVQWSHGAVEPQAWPVLAGAHQEGAYLRGAAPP*HAPSRLRPAEVLQEXX 343 RL RAQ P W +A P+LA E AP P E +E Sbjct: 122 RLPRAQLPPPPPGWPDTTDLGEAEPILALEEDEDE--EPGAPE-------GPGEDTEEER 172 Query: 344 XXXXXAVGGGQGADRAGFSPGHAGVRHNRRR 436 A GGG G + +PG AG RRR Sbjct: 173 TEDVAAKGGG-GDGKTVVTPGPAGQHDGRRR 202
>CXA12_MOUSE (Q8BQU6) Gap junction alpha-12 protein (Connexin-47) (Cx47)| Length = 440 Score = 28.5 bits (62), Expect = 8.6 Identities = 29/91 (31%), Positives = 34/91 (37%) Frame = +2 Query: 164 RLLRAQRDPVVVQWSHGAVEPQAWPVLAGAHQEGAYLRGAAPP*HAPSRLRPAEVLQEXX 343 RL RAQ P W +A P+LA E AP P E +E Sbjct: 122 RLPRAQLPPPPPGWPDTTDLGEAEPILALEEDEDE--EPGAPE-------GPGEDTEEER 172 Query: 344 XXXXXAVGGGQGADRAGFSPGHAGVRHNRRR 436 A GGG G + +PG AG RRR Sbjct: 173 AEDVAAKGGG-GDGKTVVTPGPAGQHDGRRR 202
>UBP6_HUMAN (P35125) Ubiquitin carboxyl-terminal hydrolase 6 (EC 3.1.2.15)| (Ubiquitin thioesterase 6) (Ubiquitin-specific-processing protease 6) (Deubiquitinating enzyme 6) (Proto-oncogene TRE-2) Length = 1406 Score = 28.5 bits (62), Expect = 8.6 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Frame = +3 Query: 105 SAAGEQSYKILSTSSLKPQAVCSEPKGIPSSS--SGATVPLNHRHGPCSPAPT 257 S+AG++ + + S + S PKG PSSS SG + P + P S T Sbjct: 1147 SSAGKEDMLLSKSPSSLSANISSSPKGSPSSSRKSGTSCPSSKNSSPNSSPRT 1199
>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1874 Score = 28.5 bits (62), Expect = 8.6 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = +3 Query: 141 TSSLKPQAVCSEPKGI-PSSSSGATVPLNHRHGPCSPAPTKKEPT 272 T+ LKP++ S P PSSS+G+ P PAP K PT Sbjct: 661 TTELKPES--SNPNNPNPSSSAGSNPPPKSSSSDNPPAPNKPTPT 703
>ADA3_YEAST (P32494) Transcriptional adapter 3 (NGG1 protein)| Length = 702 Score = 28.5 bits (62), Expect = 8.6 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 5/93 (5%) Frame = +3 Query: 159 QAVCSEPKGIPSSSSGATVPLNHRHGPCSPAPTKKEPTFEERLRRDTLRAG-YVQRKFSR 335 QA +E KG S+ G T L + G + PTFEERL+R+ G Y+ Sbjct: 476 QAKLAENKG---SNGGTTSTLPQQIGWITNGINLDYPTFEERLKRELKYVGIYMNLPKDE 532 Query: 336 NHRGGG----VLQSEAVKVPTELGSPQDTLEYV 422 N+ V E ++ EL Q TL+ V Sbjct: 533 NNPNSDDPDWVTGREDDEISAELRELQGTLKQV 565 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,046,373 Number of Sequences: 219361 Number of extensions: 1169630 Number of successful extensions: 4763 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4475 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4759 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
