ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet48f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1G3PA_MAIZE (P09315) Glyceraldehyde-3-phosphate dehydrogenase A, ... 28 9.1

>G3PA_MAIZE (P09315) Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast|
           precursor (EC 1.2.1.13) (NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit A)
          Length = 403

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +1

Query: 34  MASPMLSTAMAPLQ--GGMLEFXXXXXXXXXXXXXNATS 144
           MAS MLS    PLQ  GG+ EF             NATS
Sbjct: 1   MASSMLSATTVPLQQGGGLSEFSGLRSSASLPMRRNATS 39


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,427,617
Number of Sequences: 219361
Number of extensions: 202682
Number of successful extensions: 683
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 80,573,946
effective HSP length: 24
effective length of database: 75,309,282
effective search space used: 1807422768
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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