ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet48c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYI_THIDA (Q3SHS3) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 28 5.1
2FAS_MOUSE (P19096) Fatty acid synthase (EC 2.3.1.85) [Includes: ... 28 8.8
3ANK3_HUMAN (Q12955) Ankyrin-3 (ANK-3) (Ankyrin-G) 28 8.8
4FRIZ2_DROME (Q9VVX3) Protein frizzled-2 precursor (dFz2) 28 8.8
5FAS_RAT (P12785) Fatty acid synthase (EC 2.3.1.85) [Includes: [A... 28 8.8

>SYI_THIDA (Q3SHS3) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 929

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 182 LDGVPLPHPEAGEQASTTVGEESTSMARTSSAET 81
           L+G+PL HP    Q    VGE  T+ A T +  T
Sbjct: 299 LEGLPLWHPFQDRQVPVIVGEHVTADAGTGAVHT 332



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>FAS_MOUSE (P19096) Fatty acid synthase (EC 2.3.1.85) [Includes:|
           [Acyl-carrier-protein] S-acetyltransferase (EC
           2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase
           (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase
           (EC 2.3.1.41); 3-oxoacyl-[acyl-
          Length = 2504

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = -2

Query: 164 PHPEAGEQASTTVGEES--TSMARTSSAETFVDSIAATTC---ELWRSTESAL 21
           P P +    ST++ E    +S+ARTSSAE  V+++ +       LW   E A+
Sbjct: 705 PRPRSARWLSTSIPEAQWQSSLARTSSAEYNVNNLVSPVLFQEALWHIPEHAV 757



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>ANK3_HUMAN (Q12955) Ankyrin-3 (ANK-3) (Ankyrin-G)|
          Length = 4377

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 182  LDGVPLPHPEAGEQASTTVGEESTSMARTSSAETFVD 72
            + G P P PE  E++      +STS+ +T+  ET V+
Sbjct: 3193 IPGKPSPIPEVSEESEEEEQAKSTSLKQTTVEETAVE 3229



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>FRIZ2_DROME (Q9VVX3) Protein frizzled-2 precursor (dFz2)|
          Length = 694

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 170 PLPHPEAGEQASTTVGEESTSMARTSSAETFVDSIAATT 54
           P+PHP AG      VG  + S+  T   +    S+A+T+
Sbjct: 639 PIPHPYAGSGMGMPVGSAAGSLLATPYTQAGGASVASTS 677



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>FAS_RAT (P12785) Fatty acid synthase (EC 2.3.1.85) [Includes:|
           [Acyl-carrier-protein] S-acetyltransferase (EC
           2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase
           (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase
           (EC 2.3.1.41); 3-oxoacyl-[acyl-ca
          Length = 2505

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = -2

Query: 164 PHPEAGEQASTTVGEES--TSMARTSSAETFVDSIAATTC---ELWRSTESAL 21
           P P +    ST++ E    +S+ARTSSAE  V+++ +       LW   E A+
Sbjct: 705 PRPRSARWLSTSIPEAQWQSSLARTSSAEYNVNNLVSPVLFQEALWHVPEHAV 757


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.304    0.115    0.319 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,350,371
Number of Sequences: 219361
Number of extensions: 241606
Number of successful extensions: 579
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 80,573,946
effective HSP length: 36
effective length of database: 72,676,950
effective search space used: 1744246800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
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