>gb|AY105945.1| Zea mays PCO115682 mRNA sequence
          Length = 947

 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 55/60 (91%)
 Strand = Plus / Plus

                                                                       
Query: 66  gcaatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctcg 125
           |||||||||||||| ||| |||||||||||||||| || |||||||||| ||||||||||
Sbjct: 33  gcaatggagtccaccaagctctccgcgctgctggtgctcgccatgctcgcgctctcctcg 92

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                          
Query: 67       caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 124
                ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 32828010 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 32827953

>dbj|AK105903.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F11, full
           insert sequence
          Length = 1255

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 67  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 124
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 59  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 116

>dbj|AK105778.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-F10, full
           insert sequence
          Length = 1242

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 67  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 124
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 59  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 116

>dbj|AK104623.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-H11, full
           insert sequence
          Length = 1251

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 67  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 124
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 55  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 112

>dbj|AK071989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094H13, full
           insert sequence
          Length = 1272

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 67  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 124
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 63  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 120

>dbj|AK061322.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-F03, full
           insert sequence
          Length = 1257

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 67  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 124
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 61  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 118

>emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0413E07, complete
             sequence
          Length = 76546

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 67    caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 124
             ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 23245 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 23188

>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05,
             complete sequence
          Length = 142556

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 67    caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 124
             ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 90297 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 90240

>ref|XM_474092.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 783

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 69  atggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 124
           ||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 1   atggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 56

>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 170     tggcacgccgtcgagcggcacgccctcgg 198
               ||||| ||||||||||||| |||||||||
Sbjct: 1763519 tggcaggccgtcgagcggcgcgccctcgg 1763491

>emb|CR522871.1| Desulfotalea psychrophila LSv54, large plasmid
          Length = 121587

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 94     tgctggttctggccatgctcg 114
              |||||||||||||||||||||
Sbjct: 104132 tgctggttctggccatgctcg 104112

>gb|DQ397621.1| Cenarchaeum symbiosum clone C21E11, complete sequence
          Length = 41700

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 57    gtggttgctgcaatggagtcc 77
             |||||||||||||||||||||
Sbjct: 13074 gtggttgctgcaatggagtcc 13094

>gb|U31090.1|RSU31090 Rhodobacter sphaeroides FliH (fliH) gene, partial cds, FliI (fliI)
           and FliJ (fliJ) genes, complete cds
          Length = 2190

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 170 tggcacgccgtcgagcggcacgccctcgg 198
           ||||| ||||||||||||| |||||||||
Sbjct: 806 tggcaggccgtcgagcggcgcgccctcgg 778

>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 176     gccgtcgagcggcacgccct 195
               ||||||||||||||||||||
Sbjct: 2793585 gccgtcgagcggcacgccct 2793604

>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 193     cctcgggcggcggcatcagc 212
               ||||||||||||||||||||
Sbjct: 1928034 cctcgggcggcggcatcagc 1928015

>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 176     gccgtcgagcggcacgccct 195
               ||||||||||||||||||||
Sbjct: 4021080 gccgtcgagcggcacgccct 4021099

>gb|AC116677.11| Mus musculus chromosome 3, clone RP23-111M12, complete sequence
          Length = 214206

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      caggcacagcagcaccccac 21
              ||||||||||||||||||||
Sbjct: 104259 caggcacagcagcaccccac 104240

>emb|X97201.1|RSFLIIGEN R.sphaeroides fliI gene
          Length = 1341

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 171 ggcacgccgtcgagcggcacgccctcgg 198
           |||| ||||||||||||| |||||||||
Sbjct: 365 ggcaggccgtcgagcggcgcgccctcgg 338

>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 176     gccgtcgagcggcacgccct 195
               ||||||||||||||||||||
Sbjct: 3727689 gccgtcgagcggcacgccct 3727708

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 188     cacgccctcgggcggcggca 207
               ||||||||||||||||||||
Sbjct: 7955812 cacgccctcgggcggcggca 7955831

>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 176     gccgtcgagcggcacgccct 195
               ||||||||||||||||||||
Sbjct: 3420385 gccgtcgagcggcacgccct 3420404


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,465,074
Number of Sequences: 3902068
Number of extensions: 1465074
Number of successful extensions: 102604
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101128
Number of HSP's gapped (non-prelim): 1476
length of query: 225
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 203
effective length of database: 17,147,199,772
effective search space: 3480881553716
effective search space used: 3480881553716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)