ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet47g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
14EBP_BRARE (Q98TT6) Eukaryotic translation initiation factor 4E-... 30 2.0
2ORC4_SCHPO (Q9Y794) Origin recognition complex subunit 4 29 3.4
3PGK_HALSA (Q9HQD1) Phosphoglycerate kinase (EC 2.7.2.3) 28 7.7

>4EBP_BRARE (Q98TT6) Eukaryotic translation initiation factor 4E-1A-binding|
           protein (eIF4E-1A-binding protein) (4E-BP)
          Length = 112

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 29  CINSEIRSSKHCCLPLIPAMVCFKLNPTS 115
           C NS I  +  CCLP IP +    L+P S
Sbjct: 58  CRNSPIARTPPCCLPQIPGVTIPSLHPVS 86



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>ORC4_SCHPO (Q9Y794) Origin recognition complex subunit 4|
          Length = 972

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/28 (42%), Positives = 22/28 (78%)
 Frame = +2

Query: 212 VLGDSAMMVVRGPRGNFGNTVVMDDVLT 295
           VLG+   +++ GPRG+ G +V++DD+L+
Sbjct: 571 VLGEGNSVIIVGPRGS-GKSVLVDDILS 597



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>PGK_HALSA (Q9HQD1) Phosphoglycerate kinase (EC 2.7.2.3)|
          Length = 398

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 209 DVLGDSAMMVVRGPRGNFGNTVVMDDVLTEGT 304
           DVL DS  +VV GP G     V  DD+  +GT
Sbjct: 314 DVLADSETVVVNGPAG-----VFEDDLFADGT 340


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,922,972
Number of Sequences: 219361
Number of extensions: 357364
Number of successful extensions: 1197
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 80,573,946
effective HSP length: 78
effective length of database: 63,463,788
effective search space used: 1523130912
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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