>CUT2_CAEEL (P34682) Cuticlin-2 precursor|
          Length = 231

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 25/79 (31%), Positives = 34/79 (43%)
 Frame = +1

Query: 46  LGGATQRIERLLGFGCRIGGAERKGIAVGGLAPEGLGIFWMVAAAPRWSSSTGAAPPPTH 225
           +GGA Q     +G    +GGA + G A GG AP G G +    + P +  +  A      
Sbjct: 108 IGGAYQAAPAFVG-AAPVGGAYQSGPAFGGAAPAG-GAY---QSGPAFGGAAPAGGAYQS 162

Query: 226 GQVVQGLAQAARGRHSARQ 282
           G    G A A  G + A Q
Sbjct: 163 GPAFGGAAPAVGGAYQAGQ 181

>FOXC1_MOUSE (Q61572) Forkhead box protein C1 (Forkhead-related protein FKHL7)|
           (Forkhead-related transcription factor 3) (FREAC-3)
           (Transcription factor FKH-1) (Mesoderm/mesenchyme
           forkhead 1) (MF-1)
          Length = 553

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
 Frame = -2

Query: 233 TCPWVGGGAAPVLLLQRGAAATIQKIPNP--------SGAKPPTAIPFRSAPPI 96
           TCP      +P   L  G+AAT+ KI +P        SG+ PP ++P  SA P+
Sbjct: 234 TCPSPPQPLSPAAALGSGSAATVPKIESPDSSSSSLSSGSSPPGSLP--SARPL 285

>T22D2_HUMAN (O75157) TSC22 domain family protein 2 (TSC22-related-inducible|
           leucine zipper protein 4)
          Length = 780

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = -2

Query: 269 CRPRAA*ASP*TTCPWVGGGAAPVLLLQRGAAATIQKIPNPSGAKPPTAIPFRSAPPIRH 90
           C   A    P +  P   GG+ P+  +  G  A +  +PN   A P  ++P  S   +  
Sbjct: 469 CLGPAGAGQPQSVPPPQMGGSGPLSAVPGGPHAVVPGVPNVPAAVPAPSVPSVSTTSVTM 528

Query: 89  PN 84
           PN
Sbjct: 529 PN 530

>PRIM_MYXXA (P50070) DNA primase (EC 2.7.7.-)|
          Length = 606

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 158 IPNPSGAKPPTAIPFRSAPPIRHPNPS 78
           +P P+G   P + P R APP+  P P+
Sbjct: 431 LPKPAGGDAPPSSPNRPAPPLEKPPPA 457

>CHB1_BOMMO (P08827) Chorion class B protein L11 precursor|
          Length = 168

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 21/64 (32%), Positives = 25/64 (39%)
 Frame = +1

Query: 79  LGFGCRIGGAERKGIAVGGLAPEGLGIFWMVAAAPRWSSSTGAAPPPTHGQVVQGLAQAA 258
           +G GC  GG    G+  GGL   GLG         R   S G  P  T      GL  A+
Sbjct: 22  IGCGCGCGGRGYGGLGYGGLGYGGLGYGGYGGGCGR-GFSGGGLPVATASAAPTGLGIAS 80

Query: 259 RGRH 270
             R+
Sbjct: 81  ENRY 84

>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2157

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
 Frame = -2

Query: 248 ASP*TTCPWVGGGAAPVLLLQRGAAATIQ-----------KIPNPSGAKPPTAIPFRSAP 102
           A P  + P  G  AAP L+   G+ ++             ++P+  G +PP  +P  + P
Sbjct: 552 APPAQSTPTPGVAAAPTLVSGGGSTSSTSSGSFEASPVEPQLPSKEGPEPPEEVPPPTTP 611

Query: 101 PIRHPNPSSRSI 66
           P+    P    I
Sbjct: 612 PVPKVEPKGDGI 623

>IF2_STIAU (P55875) Translation initiation factor IF-2|
          Length = 1054

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = -2

Query: 263 PRAA*ASP*TTCPWVGGGAAPVLLLQRGAAATIQKIPNPSGAKPPTAIPFRSAPPIRHPN 84
           PRAA + P    P      AP   ++   AA     P P+   P T  P  +AP    P 
Sbjct: 137 PRAAASEPAAEAPKATAPVAPEPTVEAPKAAA-PVAPEPTVEAPKTEAPVAAAPIAEAPT 195

Query: 83  PSSRS 69
           P +R+
Sbjct: 196 PPART 200

>OMB_DROME (Q24432) Optomotor-blind protein (Lethal(1)optomotor-blind)|
           (L(1)omb) (Protein bifid)
          Length = 972

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 173 ATIQKIPNPSGAKPPTAIPFRSAPPIRHPNPSSRS 69
           +T ++ P+P+G  PPT +     PPI  PN +S S
Sbjct: 150 STTEEPPSPAGTPPPTIV---GLPPIPPPNNNSSS 181

>APA_MYCTU (Q50906) Alanine and proline-rich secreted protein apa precursor|
           (45/47 kDa antigen) (Fibronectin attachment protein)
           (Immunogenic protein MPT32) (Antigen MPT-32) (45-kDa
           glycoprotein) (FAP-B)
          Length = 325

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 20/55 (36%), Positives = 22/55 (40%)
 Frame = -2

Query: 248 ASP*TTCPWVGGGAAPVLLLQRGAAATIQKIPNPSGAKPPTAIPFRSAPPIRHPN 84
           ASP +T       A PV      AA T    P    A PP A P    PP+  PN
Sbjct: 52  ASPPSTAAAPPAPATPVAPPPPAAANTPNAQPGDPNAAPPPADPNAPPPPVIAPN 106

>APA_MYCBO (O30620) Alanine and proline-rich secreted protein apa precursor|
           (Fibronectin attachment protein) (45/47 kDa antigen)
           (FAP-B)
          Length = 325

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 20/55 (36%), Positives = 22/55 (40%)
 Frame = -2

Query: 248 ASP*TTCPWVGGGAAPVLLLQRGAAATIQKIPNPSGAKPPTAIPFRSAPPIRHPN 84
           ASP +T       A PV      AA T    P    A PP A P    PP+  PN
Sbjct: 52  ASPPSTAAAPPAPATPVAPPPPAAANTPNAQPGDPNAAPPPADPNAPPPPVIAPN 106

>PMA1_AJECA (Q07421) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)|
          Length = 916

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +1

Query: 34  LDRDLGGATQRIERLLGFGCRIGGAERKGIAVGGLAPEGLGIFWMVAAA 180
           L  D  G  +   R LG G  +  AER G+  GG  P G  ++  V AA
Sbjct: 553 LTGDAVGIARETSRQLGLGTNVYNAERLGLGGGGTMP-GSEVYDFVEAA 600

>MN1_HUMAN (Q10571) Probable tumor suppressor protein MN1|
          Length = 1319

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 149 PSGAKPPTAIPFRSAPPIRHPNPSSRSIR 63
           P    PP    F S PP++HP P  +S++
Sbjct: 494 PGEFTPPVPDSFPSGPPLQHPAPDHQSLQ 522

>JHD3D_HUMAN (Q6B0I6) JmjC domain-containing histone demethylation protein 3D|
           (EC 1.14.11.-) (Jumonji domain-containing protein 2D)
          Length = 520

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 198 HWCRSSSYPWAGRSGTR 248
           HW R S +P A RSGTR
Sbjct: 377 HWARHSPWPMAARSGTR 393

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -1

Query: 228 PMGRRRSGTSATTPARRRRDHPKNPQPLRRQATNRYP 118
           P  RRR  + +  PARRRR  P  P P RR+ +   P
Sbjct: 535 PSPRRRRRSPSPPPARRRRS-PSPPPPPRRRRSPSLP 570

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 19/43 (44%), Positives = 20/43 (46%)
 Frame = -1

Query: 228 PMGRRRSGTSATTPARRRRDHPKNPQPLRRQATNRYPLPLRAT 100
           P GRRR   S   P RRRR     P P RR+     P P R T
Sbjct: 542 PRGRRRRSPS-PPPTRRRRSPSPAPPPRRRRTPT--PPPRRRT 581



 Score = 27.7 bits (60), Expect = 7.8
 Identities = 25/76 (32%), Positives = 32/76 (42%)
 Frame = -1

Query: 228 PMGRRRSGTSATTPARRRRDHPKNPQPLRRQATNRYPLPLRATNXXXXXXXXXXPLGRSP 49
           P  R RS + + +P RRR    + P P RR    R P P R                RSP
Sbjct: 298 PRRRHRSRSRSYSP-RRRPSPRRRPSPRRRTPPRRMPPPPRHRR------------SRSP 344

Query: 48  EVSVQLRRRVSSASGG 1
              V+ RRR S++  G
Sbjct: 345 ---VRRRRRSSASLSG 357

>HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2 (Brain cyclic nucleotide
           gated channel 2) (BCNG-2) (Hyperpolarization-activated
           cation channel 1) (HAC-1)
          Length = 863

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = -2

Query: 218 GGGAAPVLLLQRGAAATIQKIPNPSGAKPPTAIPFRSAPPIRHPNPSSRS 69
           GGG  P      G +      P P    PP A P    PP   PNP++ S
Sbjct: 5   GGGGRP------GDSPGTTPAPGPPPPPPPPAPPQPQPPPAPPPNPTTPS 48

>FPG_MYCLE (O69470) Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)|
           (FAPY-DNA glycosylase) (DNA-(apurinic or apyrimidinic
           site) lyase mutM) (EC 4.2.99.18) (AP lyase mutM)
          Length = 281

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 7   ARRAHPPPELDRDLGGATQRIERLLGFGCRIGGAERKG 120
           A R H P  + R + G T    RLL  G RI G +R+G
Sbjct: 24  AVRVHHPRAVRRHVAGPTDLTNRLL--GTRINGIDRRG 59

>STK39_RAT (O88506) STE20/SPS1-related proline-alanine-rich protein kinase (EC|
           2.7.11.1) (Ste-20-related kinase)
           (Serine/threonine-protein kinase 39) (Pancreatic
           serine/threonine-protein kinase) (PS/TK) (PSTK1)
          Length = 553

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = -2

Query: 242 P*TTCPWVGGGAAPVLLLQRGAAATIQKIPNPSGAKPPTAIPFRSAPPIRHPNPSSRSIR 63
           P    P     AAP       AAAT    P P+ A P    P  +A P   P P+++++ 
Sbjct: 14  PQQAAPVTAAAAAP-------AAATSAPAPAPAPAAPAAPAPAPAAAPA--PAPAAQAVG 64

Query: 62  W 60
           W
Sbjct: 65  W 65

>PRP3_SOYBN (P15642) Repetitive proline-rich cell wall protein 3 precursor|
          Length = 90

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 206 APVLLLQRGAAATIQKIPNPSGAKPPTAIPFRSAPPIRHPNP 81
           A ++L+ +G A   + I  P   KPP   P    PP+  P P
Sbjct: 13  AALILMPQGLATYYKPIKKPPVYKPPVYKPPVYKPPVYKPKP 54

>MIS_RAT (P49000) Muellerian-inhibiting factor precursor (MIS)|
           (Anti-Muellerian hormone) (AMH) (Mullerian-inhibiting
           substance)
          Length = 553

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 236 TTCPWVGGGAAPVLLLQRGAAATIQKIPNPSGAKPPTAIPFRSAPPIRHPNPS 78
           T+ PW  G A  V +  + AA+ ++ +P      PPTA P  S      PN S
Sbjct: 363 TSAPWAAGLARRVAVELQAAASELRDLP----GLPPTAPPLLSRLLALCPNDS 411

>PMA1_NEUCR (P07038) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)|
          Length = 920

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = +1

Query: 34  LDRDLGGATQRIERLLGFGCRIGGAERKGIAVGGLAPEGLGIFWMVAAA 180
           L  D  G  +   R LG G  I  AER G+  GG  P G  ++  V AA
Sbjct: 557 LTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGDMP-GSEVYDFVEAA 604

>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit)
          Length = 699

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 203 PVLLLQRGAAATIQKIPNPSGAKPPTAIPFRSAPPIRHPNPS 78
           PV+    G+A  +   P P+ + PP   P   APP   P P+
Sbjct: 105 PVVPQGPGSAPGVSSAPPPAVSAPPANPPTTGAPPGPGPTPT 146

>RL15_AERPE (Q9YF98) 50S ribosomal protein L15P|
          Length = 158

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
 Frame = +1

Query: 103 GAERKGIAVGGLAPEGLGIF---WMVAAAPRWSSSTGAAPP 216
           G  RK  + GG    GLG     W +  AP W    G  PP
Sbjct: 25  GQHRKSGSKGGYGAAGLGKHEWTWTIKYAPTWYGKKGFNPP 65

>UL51_PRVKA (Q85227) Protein UL51|
          Length = 236

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 97  IGGAERKGIAVGGLAPEGLGIFWMVAAAPRWSSSTGAAPPP 219
           +G A R+  A    AP GLG+      APR +++  A PPP
Sbjct: 152 LGLARRRQPAPVRAAPAGLGLPVPAQPAPRATAARPAPPPP 192

>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic|
            nucleotide-gated channel 4 (Hyperpolarization-activated
            cation channel 4) (HAC-4)
          Length = 1175

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -2

Query: 212  GAAPVLLLQRGAAATIQKIPNPSGAKPPTAIPFRSAPP 99
            GA+PV    RG        P+P G  P T   F SAPP
Sbjct: 994  GASPVAFSPRGG-------PSPPGHSPGTPRTFPSAPP 1024

>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2160

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
 Frame = -2

Query: 257 AA*ASP*TTCPWVGGGAAPVLLLQRGAAATIQ-----------KIPNPSGAKPPTAIPFR 111
           +A A P    P  G  AAP L+   G+ ++             ++P+  G +PP  +P  
Sbjct: 549 SAQAPPAQCTPTPGVAAAPTLVSGGGSTSSTSSGSFEASPVEPQLPSKEGPEPPEEVPPP 608

Query: 110 SAPPIRHPNPSSRSI 66
           + PP     P    I
Sbjct: 609 TTPPAPKVEPKGDGI 623

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 25/76 (32%), Positives = 32/76 (42%)
 Frame = -1

Query: 228 PMGRRRSGTSATTPARRRRDHPKNPQPLRRQATNRYPLPLRATNXXXXXXXXXXPLGRSP 49
           P  R RS + + +P RRR    + P P RR    R P P R                RSP
Sbjct: 298 PRRRHRSRSRSYSP-RRRPSPRRRPSPRRRTPPRRMPPPPRHRR------------SRSP 344

Query: 48  EVSVQLRRRVSSASGG 1
              V+ RRR S++  G
Sbjct: 345 ---VRRRRRSSASLSG 357

>HMDH3_ORYSA (Q9XHL5) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 3 (EC|
           1.1.1.34) (HMG-CoA reductase 3)
          Length = 561

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 177 RRDHPKNPQPLRRQATNRYPLPLRATN 97
           RR  P  P P R QA +  PLP+R TN
Sbjct: 4   RRRAPLPPPPGRVQAGDALPLPIRHTN 30

>LBXCO_RAT (P84551) Ladybird homeobox corepressor 1|
          Length = 964

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 31/85 (36%), Positives = 32/85 (37%), Gaps = 13/85 (15%)
 Frame = +1

Query: 49  GGATQRIERLLGFGCRIGGAER------KGIAVGGLAPEGLGIFWMVAAAPRWSSSTGA- 207
           GG  +R   L G G   GGA        KG A GG  P G G        P  S   G  
Sbjct: 273 GGTRKRTFSLQGGGG--GGANSGSGGAGKGGAGGGGGP-GCGSEMAPGPPPHKSLRCGED 329

Query: 208 ------APPPTHGQVVQGLAQAARG 264
                  PPP H Q   GLA AA G
Sbjct: 330 EASGPPGPPPPHPQRALGLAAAANG 354

>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa
           DNA-pairing protein) (hPOMp
          Length = 707

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 203 PVLLLQRGAAATIQKIPNPSGAKPPTAIPFRSAPPIRHPNPS 78
           PV+    G A  +   P  S + PP   P   APP   P P+
Sbjct: 109 PVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPT 150

>PTBP1_PIG (Q29099) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
          Length = 557

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 227 PWVGGGAAPVLLLQRGAAATIQKIPNPSGAKPPTAIPFRSA 105
           P+ G G  P   + + A  ++   PN  GA  P AIP  +A
Sbjct: 307 PYAGAGFPPTFAIPQAATVSV---PNVHGALAPLAIPSAAA 344

>GLSK_HUMAN (O94925) Glutaminase kidney isoform, mitochondrial precursor (EC|
           3.5.1.2) (GLS) (L-glutamine amidohydrolase)
           (K-glutaminase)
          Length = 669

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 10/58 (17%)
 Frame = -2

Query: 266 RPRAA*ASP*TTCPWVGGGAAPVLLLQRGAAATIQKI----------PNPSGAKPPTA 123
           RP A  A+     PW GGG  P   L RG +++  +I          P P G  PP A
Sbjct: 43  RPAAGPAAAARLHPWWGGGGWPAEPLARGLSSSPSEILQELGKGSTHPQP-GVSPPAA 99


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,310,925
Number of Sequences: 219361
Number of extensions: 730604
Number of successful extensions: 4293
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 3516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4259
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)