| Clone Name | baet47d04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT008977.1| Triticum aestivum clone wdk2c.pk005.c18:fis, full insert mRNA sequence Length = 940 Score = 535 bits (270), Expect = e-149 Identities = 304/314 (96%), Gaps = 1/314 (0%) Strand = Plus / Plus Query: 76 cagccccgccgcgtccagatccggcggccgatctcccccgcccgtccccagcatggcggc 135 |||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct: 16 cagcaccgccgcgtccagatccggcggccgatctcccccgcccgtctccc-catggcggc 74 Query: 136 cggagccctgggcctggccctcgtcgcggtgttcgcggtcgcgctggcgggggcgaactc 195 ||||||||||||||||||||||||||||| ||||||| ||||||| |||||||| ||||| Sbjct: 75 cggagccctgggcctggccctcgtcgcggcgttcgcgctcgcgctcgcgggggcaaactc 134 Query: 196 cgagggcgacgcgctctcggcgctgcgccgcagcctgcgggaccccggcggcgtgctgca 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 135 cgagggcgacgcgctctcggcgctgcgccgcagcctgcgggaccccggcggcgtgctgca 194 Query: 256 gagctgggaccccaccctcgtcaacccctgcacctggttccacgtcacctgcgaccgcga 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 195 gagctgggaccccaccctcgtcaacccctgcacctggttccacgtcacctgcgaccgcga 254 Query: 316 caaccgcgtcacccgcctagatcttggtaacttgaacttatctggtcatctggtgcccga 375 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 255 caaccgcgtcacccgcctagatcttggtaatttgaacttatctggtcatctggtgcccga 314 Query: 376 gcttggttaattgg 389 ||||||| |||||| Sbjct: 315 gcttggtaaattgg 328
>gb|AY103715.1| Zea mays PCO067516 mRNA sequence Length = 1155 Score = 333 bits (168), Expect = 2e-88 Identities = 198/208 (95%) Strand = Plus / Plus Query: 174 tcgcgctggcgggggcgaactccgagggcgacgcgctctcggcgctgcgccgcagcctgc 233 ||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 253 tcgcgctcgcgggggccaactcggagggcgacgcgctctcggcgctgcgccggagcctca 312 Query: 234 gggaccccggcggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggt 293 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct: 313 gggaccccggcggcgttctgcagagctgggaccccacgctcgtcaacccctgcacctggt 372 Query: 294 tccacgtcacctgcgaccgcgacaaccgcgtcacccgcctagatcttggtaacttgaact 353 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 373 tccacgtcacctgcgaccgcgacaaccgcgtcacccgcctagatcttggtaatttgaact 432 Query: 354 tatctggtcatctggtgcccgagcttgg 381 ||||||||||||||||||| |||||||| Sbjct: 433 tatctggtcatctggtgcctgagcttgg 460
>ref|NM_191025.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 570 Score = 305 bits (154), Expect = 6e-80 Identities = 190/202 (94%) Strand = Plus / Plus Query: 180 tggcgggggcgaactccgagggcgacgcgctctcggcgctgcgccgcagcctgcgggacc 239 ||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||| Sbjct: 59 tggcgggggcgaactccgagggcgacgcgctgtcggcgctgcggcggagcctcagggacc 118 Query: 240 ccggcggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttccacg 299 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 119 ccggcggggtgctgcagagctgggaccccacgctcgtcaacccctgcacctggttccacg 178 Query: 300 tcacctgcgaccgcgacaaccgcgtcacccgcctagatcttggtaacttgaacttatctg 359 |||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||| Sbjct: 179 tcacctgcgaccgcgacaaccgcgtcacgcgcctggatcttgggaatttgaacttatctg 238 Query: 360 gtcatctggtgcccgagcttgg 381 ||||||||||||| |||||||| Sbjct: 239 gtcatctggtgcctgagcttgg 260
>gb|AF364178.1| Oryza sativa leucine-rich repeat protein mRNA, complete cds Length = 992 Score = 305 bits (154), Expect = 6e-80 Identities = 190/202 (94%) Strand = Plus / Plus Query: 180 tggcgggggcgaactccgagggcgacgcgctctcggcgctgcgccgcagcctgcgggacc 239 ||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||| Sbjct: 154 tggcgggggcgaactccgagggcgacgcgctgtcggcgctgcggcggagcctcagggacc 213 Query: 240 ccggcggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttccacg 299 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 214 ccggcggggtgctgcagagctgggaccccacgctcgtcaacccctgcacctggttccacg 273 Query: 300 tcacctgcgaccgcgacaaccgcgtcacccgcctagatcttggtaacttgaacttatctg 359 |||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||| Sbjct: 274 tcacctgcgaccgcgacaaccgcgtcacgcgcctggatcttgggaatttgaacttatctg 333 Query: 360 gtcatctggtgcccgagcttgg 381 ||||||||||||| |||||||| Sbjct: 334 gtcatctggtgcctgagcttgg 355
>gb|AF364177.1| Oryza sativa leucine-rich repeat protein mRNA, complete cds Length = 992 Score = 305 bits (154), Expect = 6e-80 Identities = 190/202 (94%) Strand = Plus / Plus Query: 180 tggcgggggcgaactccgagggcgacgcgctctcggcgctgcgccgcagcctgcgggacc 239 ||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||| Sbjct: 154 tggcgggggcgaactccgagggcgacgcgctgtcggcgctgcggcggagcctcagggacc 213 Query: 240 ccggcggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttccacg 299 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 214 ccggcggggtgctgcagagctgggaccccacgctcgtcaacccctgcacctggttccacg 273 Query: 300 tcacctgcgaccgcgacaaccgcgtcacccgcctagatcttggtaacttgaacttatctg 359 |||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||| Sbjct: 274 tcacctgcgaccgcgacaaccgcgtcacgcgcctggatcttgggaatttgaacttatctg 333 Query: 360 gtcatctggtgcccgagcttgg 381 ||||||||||||| |||||||| Sbjct: 334 gtcatctggtgcctgagcttgg 355
>dbj|AK099315.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145K04, full insert sequence Length = 1031 Score = 305 bits (154), Expect = 6e-80 Identities = 190/202 (94%) Strand = Plus / Plus Query: 180 tggcgggggcgaactccgagggcgacgcgctctcggcgctgcgccgcagcctgcgggacc 239 ||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||| Sbjct: 189 tggcgggggcgaactccgagggcgacgcgctgtcggcgctgcggcggagcctcagggacc 248 Query: 240 ccggcggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttccacg 299 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 249 ccggcggggtgctgcagagctgggaccccacgctcgtcaacccctgcacctggttccacg 308 Query: 300 tcacctgcgaccgcgacaaccgcgtcacccgcctagatcttggtaacttgaacttatctg 359 |||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||| Sbjct: 309 tcacctgcgaccgcgacaaccgcgtcacgcgcctggatcttgggaatttgaacttatctg 368 Query: 360 gtcatctggtgcccgagcttgg 381 ||||||||||||| |||||||| Sbjct: 369 gtcatctggtgcctgagcttgg 390
>dbj|AK070798.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064D14, full insert sequence Length = 1094 Score = 305 bits (154), Expect = 6e-80 Identities = 190/202 (94%) Strand = Plus / Plus Query: 180 tggcgggggcgaactccgagggcgacgcgctctcggcgctgcgccgcagcctgcgggacc 239 ||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||| Sbjct: 191 tggcgggggcgaactccgagggcgacgcgctgtcggcgctgcggcggagcctcagggacc 250 Query: 240 ccggcggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttccacg 299 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 251 ccggcggggtgctgcagagctgggaccccacgctcgtcaacccctgcacctggttccacg 310 Query: 300 tcacctgcgaccgcgacaaccgcgtcacccgcctagatcttggtaacttgaacttatctg 359 |||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||| Sbjct: 311 tcacctgcgaccgcgacaaccgcgtcacgcgcctggatcttgggaatttgaacttatctg 370 Query: 360 gtcatctggtgcccgagcttgg 381 ||||||||||||| |||||||| Sbjct: 371 gtcatctggtgcctgagcttgg 392
>gb|AF466358.1| Oryza sativa (japonica cultivar-group) floral organ regulator 1 (FOR1) mRNA, complete cds Length = 1019 Score = 276 bits (139), Expect = 5e-71 Identities = 189/203 (93%), Gaps = 2/203 (0%) Strand = Plus / Plus Query: 180 tggcgggggcgaactccgagggcgacgcgctctcggcgctgcgccgcagcctgcgggacc 239 ||||||||||||||||||||||||||||||| ||||||||||| || ||| | |||||| Sbjct: 152 tggcgggggcgaactccgagggcgacgcgctgtcggcgctgcggcggagc-tcagggacc 210 Query: 240 ccggcggcg-tgctgcagagctgggaccccaccctcgtcaacccctgcacctggttccac 298 ||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 211 ccggcgggggtgctgcagagctgggaccccacgctcgtcaacccctgcacctggttccac 270 Query: 299 gtcacctgcgaccgcgacaaccgcgtcacccgcctagatcttggtaacttgaacttatct 358 ||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||| Sbjct: 271 gtcacctgcgaccgcgacaaccgcgtcacgcgcctggatcttgggaatttgaacttatct 330 Query: 359 ggtcatctggtgcccgagcttgg 381 |||||||||||||| |||||||| Sbjct: 331 ggtcatctggtgcctgagcttgg 353
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 242 bits (122), Expect = 7e-61 Identities = 146/154 (94%) Strand = Plus / Plus Query: 180 tggcgggggcgaactccgagggcgacgcgctctcggcgctgcgccgcagcctgcgggacc 239 ||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||| Sbjct: 34372544 tggcgggggcgaactccgagggcgacgcgctgtcggcgctgcggcggagcctcagggacc 34372603 Query: 240 ccggcggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttccacg 299 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 34372604 ccggcggggtgctgcagagctgggaccccacgctcgtcaacccctgcacctggttccacg 34372663 Query: 300 tcacctgcgaccgcgacaaccgcgtcacccgcct 333 |||||||||||||||||||||||||||| ||||| Sbjct: 34372664 tcacctgcgaccgcgacaaccgcgtcacgcgcct 34372697 Score = 141 bits (71), Expect = 2e-30 Identities = 92/99 (92%) Strand = Plus / Minus Query: 235 ggaccccggcggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggtt 294 ||||||| | |||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 9920358 ggacccccggggcgtgctccagagctgggacccgaccctcgtcaacccctgcacctggtt 9920299 Query: 295 ccacgtcacctgcgaccgcgacaaccgcgtcacccgcct 333 |||||||||||||||||||| | ||||||||||||||| Sbjct: 9920298 ccacgtcacctgcgaccgcgccggccgcgtcacccgcct 9920260 Score = 69.9 bits (35), Expect = 6e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 335 gatcttggtaacttgaacttatctggtcatctggtgcccgagcttgg 381 |||||||| || |||||||||||||||||||||||||| |||||||| Sbjct: 34373477 gatcttgggaatttgaacttatctggtcatctggtgcctgagcttgg 34373523
>dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0468B07 Length = 169071 Score = 242 bits (122), Expect = 7e-61 Identities = 146/154 (94%) Strand = Plus / Plus Query: 180 tggcgggggcgaactccgagggcgacgcgctctcggcgctgcgccgcagcctgcgggacc 239 ||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||| Sbjct: 54888 tggcgggggcgaactccgagggcgacgcgctgtcggcgctgcggcggagcctcagggacc 54947 Query: 240 ccggcggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttccacg 299 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 54948 ccggcggggtgctgcagagctgggaccccacgctcgtcaacccctgcacctggttccacg 55007 Query: 300 tcacctgcgaccgcgacaaccgcgtcacccgcct 333 |||||||||||||||||||||||||||| ||||| Sbjct: 55008 tcacctgcgaccgcgacaaccgcgtcacgcgcct 55041 Score = 69.9 bits (35), Expect = 6e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 335 gatcttggtaacttgaacttatctggtcatctggtgcccgagcttgg 381 |||||||| || |||||||||||||||||||||||||| |||||||| Sbjct: 55821 gatcttgggaatttgaacttatctggtcatctggtgcctgagcttgg 55867
>ref|NM_188130.1| Oryza sativa (japonica cultivar-group), Ozsa8562 predicted mRNA Length = 639 Score = 147 bits (74), Expect = 3e-32 Identities = 95/102 (93%) Strand = Plus / Plus Query: 235 ggaccccggcggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggtt 294 ||||||| | |||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 111 ggacccccggggcgtgctccagagctgggacccgaccctcgtcaacccctgcacctggtt 170 Query: 295 ccacgtcacctgcgaccgcgacaaccgcgtcacccgcctaga 336 |||||||||||||||||||| | |||||||||||||||||| Sbjct: 171 ccacgtcacctgcgaccgcgccggccgcgtcacccgcctaga 212
>dbj|AK061114.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-E01, full insert sequence Length = 993 Score = 147 bits (74), Expect = 3e-32 Identities = 95/102 (93%) Strand = Plus / Plus Query: 235 ggaccccggcggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggtt 294 ||||||| | |||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 184 ggacccccggggcgtgctccagagctgggacccgaccctcgtcaacccctgcacctggtt 243 Query: 295 ccacgtcacctgcgaccgcgacaaccgcgtcacccgcctaga 336 |||||||||||||||||||| | |||||||||||||||||| Sbjct: 244 ccacgtcacctgcgaccgcgccggccgcgtcacccgcctaga 285
>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1085F09 Length = 132713 Score = 141 bits (71), Expect = 2e-30 Identities = 92/99 (92%) Strand = Plus / Minus Query: 235 ggaccccggcggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggtt 294 ||||||| | |||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 640 ggacccccggggcgtgctccagagctgggacccgaccctcgtcaacccctgcacctggtt 581 Query: 295 ccacgtcacctgcgaccgcgacaaccgcgtcacccgcct 333 |||||||||||||||||||| | ||||||||||||||| Sbjct: 580 ccacgtcacctgcgaccgcgccggccgcgtcacccgcct 542
>dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0003H10 Length = 142418 Score = 141 bits (71), Expect = 2e-30 Identities = 92/99 (92%) Strand = Plus / Minus Query: 235 ggaccccggcggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggtt 294 ||||||| | |||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 56124 ggacccccggggcgtgctccagagctgggacccgaccctcgtcaacccctgcacctggtt 56065 Query: 295 ccacgtcacctgcgaccgcgacaaccgcgtcacccgcct 333 |||||||||||||||||||| | ||||||||||||||| Sbjct: 56064 ccacgtcacctgcgaccgcgccggccgcgtcacccgcct 56026
>dbj|AK059775.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-A06, full insert sequence Length = 1009 Score = 141 bits (71), Expect = 2e-30 Identities = 92/99 (92%) Strand = Plus / Plus Query: 235 ggaccccggcggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggtt 294 ||||||| | |||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 184 ggacccccggggcgtgctccagagctgggacccgaccctcgtcaacccctgcacctggtt 243 Query: 295 ccacgtcacctgcgaccgcgacaaccgcgtcacccgcct 333 |||||||||||||||||||| | ||||||||||||||| Sbjct: 244 ccacgtcacctgcgaccgcgccggccgcgtcacccgcct 282
>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0036E02 Length = 145931 Score = 141 bits (71), Expect = 2e-30 Identities = 92/99 (92%) Strand = Plus / Minus Query: 235 ggaccccggcggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggtt 294 ||||||| | |||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 14851 ggacccccggggcgtgctccagagctgggacccgaccctcgtcaacccctgcacctggtt 14792 Query: 295 ccacgtcacctgcgaccgcgacaaccgcgtcacccgcct 333 |||||||||||||||||||| | ||||||||||||||| Sbjct: 14791 ccacgtcacctgcgaccgcgccggccgcgtcacccgcct 14753
>ref|NM_184943.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1125 Score = 123 bits (62), Expect = 4e-25 Identities = 77/82 (93%) Strand = Plus / Plus Query: 244 cggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttccacgtcac 303 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 260 cggcgtgctgcagagctgggacccgaccctcgtcaacccctgcacctggttccatgtcac 319 Query: 304 ctgcgaccgcgacaaccgcgtc 325 |||||||| || || ||||||| Sbjct: 320 ctgcgaccacgccagccgcgtc 341
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 123 bits (62), Expect = 4e-25 Identities = 77/82 (93%) Strand = Plus / Plus Query: 244 cggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttccacgtcac 303 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 18448166 cggcgtgctgcagagctgggacccgaccctcgtcaacccctgcacctggttccatgtcac 18448225 Query: 304 ctgcgaccgcgacaaccgcgtc 325 |||||||| || || ||||||| Sbjct: 18448226 ctgcgaccacgccagccgcgtc 18448247
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 123 bits (62), Expect = 4e-25 Identities = 77/82 (93%) Strand = Plus / Plus Query: 244 cggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttccacgtcac 303 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 18442207 cggcgtgctgcagagctgggacccgaccctcgtcaacccctgcacctggttccatgtcac 18442266 Query: 304 ctgcgaccgcgacaaccgcgtc 325 |||||||| || || ||||||| Sbjct: 18442267 ctgcgaccacgccagccgcgtc 18442288
>gb|AC097367.3| Oryza sativa chromosome 3 BAC OSJNBa0051C19 genomic sequence, complete sequence Length = 90673 Score = 123 bits (62), Expect = 4e-25 Identities = 77/82 (93%) Strand = Plus / Minus Query: 244 cggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttccacgtcac 303 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 33049 cggcgtgctgcagagctgggacccgaccctcgtcaacccctgcacctggttccatgtcac 32990 Query: 304 ctgcgaccgcgacaaccgcgtc 325 |||||||| || || ||||||| Sbjct: 32989 ctgcgaccacgccagccgcgtc 32968
>dbj|AK069710.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031G03, full insert sequence Length = 1027 Score = 123 bits (62), Expect = 4e-25 Identities = 77/82 (93%) Strand = Plus / Plus Query: 244 cggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttccacgtcac 303 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 274 cggcgtgctgcagagctgggacccgaccctcgtcaacccctgcacctggttccatgtcac 333 Query: 304 ctgcgaccgcgacaaccgcgtc 325 |||||||| || || ||||||| Sbjct: 334 ctgcgaccacgccagccgcgtc 355
>dbj|AK061730.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C03, full insert sequence Length = 1085 Score = 123 bits (62), Expect = 4e-25 Identities = 77/82 (93%) Strand = Plus / Plus Query: 244 cggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttccacgtcac 303 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 211 cggcgtgctgcagagctgggacccgaccctcgtcaacccctgcacctggttccatgtcac 270 Query: 304 ctgcgaccgcgacaaccgcgtc 325 |||||||| || || ||||||| Sbjct: 271 ctgcgaccacgccagccgcgtc 292
>gb|BT009365.1| Triticum aestivum clone wlm96.pk027.l18:fis, full insert mRNA sequence Length = 1130 Score = 119 bits (60), Expect = 7e-24 Identities = 72/76 (94%) Strand = Plus / Plus Query: 235 ggaccccggcggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggtt 294 ||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 199 ggaccccaacggcgtgctccagagctgggatcccaccctcgtcaacccctgcacctggtt 258 Query: 295 ccacgtcacctgcgac 310 |||||||||||||||| Sbjct: 259 ccacgtcacctgcgac 274
>gb|AY736123.1| Triticum aestivum leucine-rich repeat protein mRNA, complete cds Length = 740 Score = 119 bits (60), Expect = 7e-24 Identities = 72/76 (94%) Strand = Plus / Plus Query: 235 ggaccccggcggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggtt 294 ||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 182 ggaccccaacggcgtgctccagagctgggatcccaccctcgtcaacccctgcacctggtt 241 Query: 295 ccacgtcacctgcgac 310 |||||||||||||||| Sbjct: 242 ccacgtcacctgcgac 257
>ref|XM_475466.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 651 Score = 107 bits (54), Expect = 3e-20 Identities = 93/106 (87%) Strand = Plus / Plus Query: 236 gaccccggcggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttc 295 ||||||| ||||| |||| ||||||||||||| ||| || |||||||||||||||||| Sbjct: 133 gaccccgacggcgcgctggcgagctgggaccccgacctggtgaacccctgcacctggttc 192 Query: 296 cacgtcacctgcgaccgcgacaaccgcgtcacccgcctagatcttg 341 | |||||||||| || |||||||||||||| |||||||||||||| Sbjct: 193 cgcgtcacctgcaacgccgacaaccgcgtcatccgcctagatcttg 238
>dbj|AK107986.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-135-F01, full insert sequence Length = 959 Score = 107 bits (54), Expect = 3e-20 Identities = 93/106 (87%) Strand = Plus / Plus Query: 236 gaccccggcggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttc 295 ||||||| ||||| |||| ||||||||||||| ||| || |||||||||||||||||| Sbjct: 205 gaccccgacggcgcgctggcgagctgggaccccgacctggtgaacccctgcacctggttc 264 Query: 296 cacgtcacctgcgaccgcgacaaccgcgtcacccgcctagatcttg 341 | |||||||||| || |||||||||||||| |||||||||||||| Sbjct: 265 cgcgtcacctgcaacgccgacaaccgcgtcatccgcctagatcttg 310
>gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088I06, complete sequence Length = 187651 Score = 91.7 bits (46), Expect = 2e-15 Identities = 85/98 (86%) Strand = Plus / Minus Query: 236 gaccccggcggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttc 295 ||||||| ||||| |||| ||||||||||||| ||| || |||||||||||||||||| Sbjct: 74643 gaccccgacggcgcgctggcgagctgggaccccgacctggtgaacccctgcacctggttc 74584 Query: 296 cacgtcacctgcgaccgcgacaaccgcgtcacccgcct 333 | |||||||||| || |||||||||||||| |||||| Sbjct: 74583 cgcgtcacctgcaacgccgacaaccgcgtcatccgcct 74546
>gb|AY459341.1| Oryza sativa (japonica cultivar-group) clone CL031105.6 R2R3-MYB gene region Length = 58956 Score = 91.7 bits (46), Expect = 2e-15 Identities = 85/98 (86%) Strand = Plus / Plus Query: 236 gaccccggcggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttc 295 ||||||| ||||| |||| ||||||||||||| ||| || |||||||||||||||||| Sbjct: 6245 gaccccgacggcgcgctggcgagctgggaccccgacctggtgaacccctgcacctggttc 6304 Query: 296 cacgtcacctgcgaccgcgacaaccgcgtcacccgcct 333 | |||||||||| || |||||||||||||| |||||| Sbjct: 6305 cgcgtcacctgcaacgccgacaaccgcgtcatccgcct 6342
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 91.7 bits (46), Expect = 2e-15 Identities = 85/98 (86%) Strand = Plus / Minus Query: 236 gaccccggcggcgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttc 295 ||||||| ||||| |||| ||||||||||||| ||| || |||||||||||||||||| Sbjct: 24006154 gaccccgacggcgcgctggcgagctgggaccccgacctggtgaacccctgcacctggttc 24006095 Query: 296 cacgtcacctgcgaccgcgacaaccgcgtcacccgcct 333 | |||||||||| || |||||||||||||| |||||| Sbjct: 24006094 cgcgtcacctgcaacgccgacaaccgcgtcatccgcct 24006057
>gb|BT009398.1| Triticum aestivum clone wlm96.pk042.k21:fis, full insert mRNA sequence Length = 937 Score = 89.7 bits (45), Expect = 6e-15 Identities = 57/61 (93%) Strand = Plus / Plus Query: 247 cgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttccacgtcacctg 306 |||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||| Sbjct: 130 cgtgctgcagagctgggatcccacccttgtcaacccctgcacttggttccatgtcacctg 189 Query: 307 c 307 | Sbjct: 190 c 190
>gb|BT009386.1| Triticum aestivum clone wlm96.pk034.m17:fis, full insert mRNA sequence Length = 1030 Score = 67.9 bits (34), Expect = 2e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 257 agctgggaccccaccctcgtcaacccctgcacctggttccacgtcacctgcgaccgcgac 316 |||||||| || || || |||||||||||||| |||||||| ||||||||| ||| |||| Sbjct: 171 agctgggatccgacgcttgtcaacccctgcacttggttccatgtcacctgcaacctcgac 230 Query: 317 aaccgcgtcacccg 330 ||| ||||||||| Sbjct: 231 aactccgtcacccg 244
>gb|AC136491.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062E06, complete sequence Length = 158842 Score = 63.9 bits (32), Expect = 4e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 248 gtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttccacgtcacctgc 307 ||||||||||| ||||| || ||||| || || ||||||||||||||||| ||||||||| Sbjct: 121084 gtgctgcagagttgggatccaacccttgtaaatccctgcacctggttccatgtcacctgc 121025 Score = 61.9 bits (31), Expect = 1e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 256 gagctgggaccccaccctcgtcaacccctgcacctggttccacgtcacctgcgac 310 ||||||||| || ||||| ||||| |||||||| ||| ||||||||||||||||| Sbjct: 116770 gagctgggatccgacccttgtcaatccctgcacttgggtccacgtcacctgcgac 116716
>emb|AJ890017.1| Triticum aestivum partial mRNA for putative leucine-rich repeat protein (lrr gene), cultivar Wyuna, from endosperm tissue Length = 659 Score = 63.9 bits (32), Expect = 4e-07 Identities = 55/62 (88%), Gaps = 3/62 (4%) Strand = Plus / Plus Query: 282 cctgcacctggttccacgtcacctgcgaccgcg---acaaccgcgtcacccgcctagatc 338 |||||||||||| |||| ||||||||||||||| |||| |||||||||||| |||||| Sbjct: 107 cctgcacctggtcccacatcacctgcgaccgcgataacaatcgcgtcacccgcatagatc 166 Query: 339 tt 340 || Sbjct: 167 tt 168
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 63.9 bits (32), Expect = 4e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 248 gtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttccacgtcacctgc 307 ||||||||||| ||||| || ||||| || || ||||||||||||||||| ||||||||| Sbjct: 17831433 gtgctgcagagttgggatccaacccttgtaaatccctgcacctggttccatgtcacctgc 17831374 Score = 61.9 bits (31), Expect = 1e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 256 gagctgggaccccaccctcgtcaacccctgcacctggttccacgtcacctgcgac 310 ||||||||| || ||||| ||||| |||||||| ||| ||||||||||||||||| Sbjct: 17827119 gagctgggatccgacccttgtcaatccctgcacttgggtccacgtcacctgcgac 17827065
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 63.9 bits (32), Expect = 4e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 248 gtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttccacgtcacctgc 307 ||||||||||| ||||| || ||||| || || ||||||||||||||||| ||||||||| Sbjct: 17925749 gtgctgcagagttgggatccaacccttgtaaatccctgcacctggttccatgtcacctgc 17925690 Score = 61.9 bits (31), Expect = 1e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 256 gagctgggaccccaccctcgtcaacccctgcacctggttccacgtcacctgcgac 310 ||||||||| || ||||| ||||| |||||||| ||| ||||||||||||||||| Sbjct: 17921435 gagctgggatccgacccttgtcaatccctgcacttgggtccacgtcacctgcgac 17921381
>dbj|AP004499.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT16N13, TM0031, complete sequence Length = 97191 Score = 58.0 bits (29), Expect = 2e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 247 cgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttccacgtcacctg 306 |||||| ||||||||||| |||| || |||| |||||| ||||||||||| |||||||| Sbjct: 24521 cgtgcttcagagctgggatgccacgcttgtcagcccctgtacctggttccatgtcacctg 24462 Query: 307 c 307 | Sbjct: 24461 c 24461
>gb|AY226583.1| X Citrofortunella mitis leucine-rich repeat protein mRNA, complete cds Length = 1048 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Plus Query: 247 cgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggtt 294 |||||| ||||||||||| ||||| |||||||| |||||||| ||||| Sbjct: 249 cgtgcttcagagctgggatcccactctcgtcaatccctgcacttggtt 296
>emb|AL161424.13| Human DNA sequence from clone RP11-175B12 on chromosome 13 Contains part of the DLEU1 gene for deleted in lymphocytic leukemia 1 (BCMS LEU1) and a novel gene, complete sequence Length = 126427 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 248 gtgctgcagagctgggaccccaccct 273 |||||||||||||||||||||||||| Sbjct: 25689 gtgctgcagagctgggaccccaccct 25664
>gb|AF440620.1|AF440620 Homo sapiens 13q14 chronic lymphocytic leukemia suppressor locus section 2 of 2 Length = 440917 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 248 gtgctgcagagctgggaccccaccct 273 |||||||||||||||||||||||||| Sbjct: 227485 gtgctgcagagctgggaccccaccct 227460
>gb|U62279.1|SBU62279 Sorghum bicolor leucine-rich repeat-containing extracellular glycoprotein mRNA, complete cds Length = 936 Score = 50.1 bits (25), Expect = 0.005 Identities = 52/61 (85%) Strand = Plus / Plus Query: 247 cgtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttccacgtcacctg 306 |||||||||||||||| | | || || | ||| ||||||||||||||||| |||||||| Sbjct: 137 cgtgctgcagagctggaattcgacgcttgccaatccctgcacctggttccatgtcacctg 196 Query: 307 c 307 | Sbjct: 197 c 197
>gb|AY570507.1| Theobroma cacao somatic embryogenesis receptor-like kinase (SERK) mRNA, partial cds Length = 1402 Score = 48.1 bits (24), Expect = 0.021 Identities = 39/44 (88%) Strand = Plus / Plus Query: 251 ctgcagagctgggaccccaccctcgtcaacccctgcacctggtt 294 |||||||| ||||| || ||||| |||||||||||||| ||||| Sbjct: 148 ctgcagagttgggatcctacccttgtcaacccctgcacatggtt 191
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 46.1 bits (23), Expect = 0.084 Identities = 23/23 (100%) Strand = Plus / Minus Query: 200 ggcgacgcgctctcggcgctgcg 222 ||||||||||||||||||||||| Sbjct: 4694703 ggcgacgcgctctcggcgctgcg 4694681 Score = 46.1 bits (23), Expect = 0.084 Identities = 26/27 (96%) Strand = Plus / Plus Query: 195 ccgagggcgacgcgctctcggcgctgc 221 |||| |||||||||||||||||||||| Sbjct: 4323123 ccgacggcgacgcgctctcggcgctgc 4323149
>ref|NM_122117.2| Arabidopsis thaliana protein binding AT5G21090 mRNA, complete cds Length = 1154 Score = 44.1 bits (22), Expect = 0.33 Identities = 61/74 (82%) Strand = Plus / Plus Query: 254 cagagctgggaccccaccctcgtcaacccctgcacctggttccacgtcacctgcgaccgc 313 ||||||||||| || || || || || || || ||||||||||| |||||||| ||| Sbjct: 291 cagagctgggatccaactcttgttaatccttgtacctggttccatgtcacctgtaaccaa 350 Query: 314 gacaaccgcgtcac 327 |||||||||||||| Sbjct: 351 gacaaccgcgtcac 364
>ref|XM_472733.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1887 Score = 44.1 bits (22), Expect = 0.33 Identities = 43/50 (86%) Strand = Plus / Plus Query: 248 gtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttcca 297 ||||||||||| ||||| ||||| || ||||| || ||||| |||||||| Sbjct: 151 gtgctgcagagttgggatcccactctggtcaatccatgcacatggttcca 200
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 298 cgtcacctgcgaccgcgacaac 319 |||||||||||||||||||||| Sbjct: 1379438 cgtcacctgcgaccgcgacaac 1379459
>gb|AY652735.1| Oryza sativa (japonica cultivar-group) somatic embryogenesis protein kinase 1 mRNA, complete cds Length = 2380 Score = 44.1 bits (22), Expect = 0.33 Identities = 43/50 (86%) Strand = Plus / Plus Query: 248 gtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttcca 297 ||||||||||| ||||| ||||| || ||||| || ||||| |||||||| Sbjct: 271 gtgctgcagagttgggatcccactctggtcaatccatgcacatggttcca 320
>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21, complete sequence Length = 138969 Score = 44.1 bits (22), Expect = 0.33 Identities = 43/50 (86%) Strand = Plus / Minus Query: 248 gtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttcca 297 ||||||||||| ||||| ||||| || ||||| || ||||| |||||||| Sbjct: 54356 gtgctgcagagttgggatcccactctggtcaatccatgcacatggttcca 54307
>gb|AY791293.2| Cocos nucifera somatic embryogenesis receptor kinase mRNA, complete cds Length = 1890 Score = 44.1 bits (22), Expect = 0.33 Identities = 43/50 (86%) Strand = Plus / Plus Query: 248 gtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttcca 297 ||||||||||||||||| || || || ||||| || ||||| |||||||| Sbjct: 142 gtgctgcagagctgggatccgactctggtcaatccatgcacatggttcca 191
>gb|AY081542.1| Arabidopsis thaliana unknown protein mRNA, complete cds Length = 945 Score = 44.1 bits (22), Expect = 0.33 Identities = 61/74 (82%) Strand = Plus / Plus Query: 254 cagagctgggaccccaccctcgtcaacccctgcacctggttccacgtcacctgcgaccgc 313 ||||||||||| || || || || || || || ||||||||||| |||||||| ||| Sbjct: 145 cagagctgggatccaactcttgttaatccttgtacctggttccatgtcacctgtaaccaa 204 Query: 314 gacaaccgcgtcac 327 |||||||||||||| Sbjct: 205 gacaaccgcgtcac 218
>gb|BT006268.1| Arabidopsis thaliana At5g21090 mRNA, complete cds Length = 657 Score = 44.1 bits (22), Expect = 0.33 Identities = 61/74 (82%) Strand = Plus / Plus Query: 254 cagagctgggaccccaccctcgtcaacccctgcacctggttccacgtcacctgcgaccgc 313 ||||||||||| || || || || || || || ||||||||||| |||||||| ||| Sbjct: 145 cagagctgggatccaactcttgttaatccttgtacctggttccatgtcacctgtaaccaa 204 Query: 314 gacaaccgcgtcac 327 |||||||||||||| Sbjct: 205 gacaaccgcgtcac 218
>gb|AF324989.2|AF324989 Arabidopsis thaliana AT5g21090 (AT5g21090/T10F18_120) mRNA, complete cds Length = 1053 Score = 44.1 bits (22), Expect = 0.33 Identities = 61/74 (82%) Strand = Plus / Plus Query: 254 cagagctgggaccccaccctcgtcaacccctgcacctggttccacgtcacctgcgaccgc 313 ||||||||||| || || || || || || || ||||||||||| |||||||| ||| Sbjct: 281 cagagctgggatccaactcttgttaatccttgtacctggttccatgtcacctgtaaccaa 340 Query: 314 gacaaccgcgtcac 327 |||||||||||||| Sbjct: 341 gacaaccgcgtcac 354
>gb|AF370543.1|AF370543 Arabidopsis thaliana Unknown protein mRNA, complete cds Length = 1141 Score = 44.1 bits (22), Expect = 0.33 Identities = 61/74 (82%) Strand = Plus / Plus Query: 254 cagagctgggaccccaccctcgtcaacccctgcacctggttccacgtcacctgcgaccgc 313 ||||||||||| || || || || || || || ||||||||||| |||||||| ||| Sbjct: 291 cagagctgggatccaactcttgttaatccttgtacctggttccatgtcacctgtaaccaa 350 Query: 314 gacaaccgcgtcac 327 |||||||||||||| Sbjct: 351 gacaaccgcgtcac 364
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.33 Identities = 43/50 (86%) Strand = Plus / Minus Query: 248 gtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttcca 297 ||||||||||| ||||| ||||| || ||||| || ||||| |||||||| Sbjct: 22845581 gtgctgcagagttgggatcccactctggtcaatccatgcacatggttcca 22845532
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Minus Query: 277 caacccctgcacctggttccacgtcacctg 306 |||||| |||||||||||||| |||||||| Sbjct: 6498670 caacccttgcacctggttccatgtcacctg 6498641
>gb|AC140977.1| Arabidopsis thaliana chromosome 5 BAC F13M11 genomic sequence, complete sequence Length = 112600 Score = 44.1 bits (22), Expect = 0.33 Identities = 61/74 (82%) Strand = Plus / Minus Query: 254 cagagctgggaccccaccctcgtcaacccctgcacctggttccacgtcacctgcgaccgc 313 ||||||||||| || || || || || || || ||||||||||| |||||||| ||| Sbjct: 110034 cagagctgggatccaactcttgttaatccttgtacctggttccatgtcacctgtaaccaa 109975 Query: 314 gacaaccgcgtcac 327 |||||||||||||| Sbjct: 109974 gacaaccgcgtcac 109961
>gb|BT002517.1| Arabidopsis thaliana Unknown protein (At5g21090) mRNA, complete cds Length = 1144 Score = 44.1 bits (22), Expect = 0.33 Identities = 61/74 (82%) Strand = Plus / Plus Query: 254 cagagctgggaccccaccctcgtcaacccctgcacctggttccacgtcacctgcgaccgc 313 ||||||||||| || || || || || || || ||||||||||| |||||||| ||| Sbjct: 296 cagagctgggatccaactcttgttaatccttgtacctggttccatgtcacctgtaaccaa 355 Query: 314 gacaaccgcgtcac 327 |||||||||||||| Sbjct: 356 gacaaccgcgtcac 369
>gb|AC069325.6|AC069325 Genomic Sequence For Arabidopsis thaliana Clone T10F18 From Chromosome V, complete sequence Length = 84413 Score = 44.1 bits (22), Expect = 0.33 Identities = 61/74 (82%) Strand = Plus / Minus Query: 254 cagagctgggaccccaccctcgtcaacccctgcacctggttccacgtcacctgcgaccgc 313 ||||||||||| || || || || || || || ||||||||||| |||||||| ||| Sbjct: 45120 cagagctgggatccaactcttgttaatccttgtacctggttccatgtcacctgtaaccaa 45061 Query: 314 gacaaccgcgtcac 327 |||||||||||||| Sbjct: 45060 gacaaccgcgtcac 45047
>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0690H04 Length = 137319 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Minus Query: 277 caacccctgcacctggttccacgtcacctg 306 |||||| |||||||||||||| |||||||| Sbjct: 15046 caacccttgcacctggttccatgtcacctg 15017
>dbj|AK099777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095F19, full insert sequence Length = 2296 Score = 44.1 bits (22), Expect = 0.33 Identities = 43/50 (86%) Strand = Plus / Plus Query: 248 gtgctgcagagctgggaccccaccctcgtcaacccctgcacctggttcca 297 ||||||||||| ||||| ||||| || ||||| || ||||| |||||||| Sbjct: 353 gtgctgcagagttgggatcccactctggtcaatccatgcacatggttcca 402
>dbj|AK100258.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062B01, full insert sequence Length = 2438 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Plus Query: 277 caacccctgcacctggttccacgtcacctg 306 |||||| |||||||||||||| |||||||| Sbjct: 580 caacccttgcacctggttccatgtcacctg 609
>dbj|AK065224.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002G23, full insert sequence Length = 2174 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Plus Query: 277 caacccctgcacctggttccacgtcacctg 306 |||||| |||||||||||||| |||||||| Sbjct: 241 caacccttgcacctggttccatgtcacctg 270
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 133 ggccggagccctgggcctggcc 154 |||||||||||||||||||||| Sbjct: 1437876 ggccggagccctgggcctggcc 1437897 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 ctcggcgctgcgccgcagcc 230 |||||||||||||||||||| Sbjct: 1260126 ctcggcgctgcgccgcagcc 1260107
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 199 gggcgacgcgctctcggcgctgcgc 223 ||||||||||||| ||||||||||| Sbjct: 2567549 gggcgacgcgctcgcggcgctgcgc 2567573
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 159 tcgcggtgttcgcggtcgcgctggcgggg 187 ||||| |||||||||| |||||||||||| Sbjct: 5137806 tcgcgctgttcgcggtggcgctggcgggg 5137834
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 74 gccagccccgccgcgtccagatccg 98 |||||||||||||| |||||||||| Sbjct: 4227654 gccagccccgccgcctccagatccg 4227630
>emb|AJ272309.1|HVU272309 Hordeum vulgare mRNA for sucrose transporter 1 (sut1 gene) Length = 2044 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 207 cgctctcggcgctgcgccgcagcct 231 |||||||||||||||||||| |||| Sbjct: 211 cgctctcggcgctgcgccgccgcct 187
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 74 gccagccccgccgcgtccagatccg 98 |||||||||||||| |||||||||| Sbjct: 4227641 gccagccccgccgcctccagatccg 4227617
>emb|AL954158.4|CNS08CCW Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0089D09 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104999 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 74 gccagccccgccgcgtccagatccg 98 |||||||||||||| |||||||||| Sbjct: 56129 gccagccccgccgcctccagatccg 56153
>gb|AC116136.9| Mus musculus chromosome 5, clone RP23-116G17, complete sequence Length = 212184 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 215 gcgctgcgccgcagcctgcgggac 238 |||||||||||| ||||||||||| Sbjct: 88751 gcgctgcgccgcggcctgcgggac 88728
>ref|XM_869699.1| PREDICTED: Bos taurus similar to Tumor necrosis factor receptor superfamily member Fn14 precursor (Fibroblast growth factor-inducible immediate-early response protein 14) (FGF-inducible 14) (Tweak-receptor) (TweakR) (LOC617439), mRNA Length = 966 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gccctgggcctggccctcgt 159 |||||||||||||||||||| Sbjct: 268 gccctgggcctggccctcgt 287
>gb|AC127415.3| Mus musculus BAC clone RP23-450L4 from chromosome 19, complete sequence Length = 177302 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 cagacacatcgcagcttcctcctc 45 |||||||||| ||||||||||||| Sbjct: 74407 cagacacatcacagcttcctcctc 74430
>ref|XM_542201.2| PREDICTED: Canis familiaris similar to Proprotein convertase subtilisin/kexin type 4 precursor (PC4) (Neuroendocrine convertase 3) (NEC 3) (Prohormone convertase 3) (KEX2-like endoprotease 3) (LOC485083), mRNA Length = 2274 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gccctgggcctggccctcgt 159 |||||||||||||||||||| Sbjct: 43 gccctgggcctggccctcgt 62
>ref|XM_745362.1| Aspergillus fumigatus Af293 adenosine deaminase (Afu1g07080) partial mRNA Length = 1521 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 298 cgtcacctgcgaccgcgacaaccgcgtc 325 ||||||||||||| |||||||| ||||| Sbjct: 742 cgtcacctgcgacggcgacaacggcgtc 715
>emb|AL592486.9| Human DNA sequence from clone RP13-60M5 on chromosome 9 Contains the 3' end of a novel gene, a novel gene and a CpG island, complete sequence Length = 93471 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 cggagccctgggcctggccc 155 |||||||||||||||||||| Sbjct: 57591 cggagccctgggcctggccc 57610
>gb|AC092981.3| Homo sapiens 3 BAC RP11-305I9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160000 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 cggagccctgggcctggccc 155 |||||||||||||||||||| Sbjct: 141109 cggagccctgggcctggccc 141128
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 ggccggagccctgggcctgg 152 |||||||||||||||||||| Sbjct: 4239325 ggccggagccctgggcctgg 4239306
>gb|AC104650.2| Homo sapiens BAC clone RP11-117J13 from 4, complete sequence Length = 163948 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 cccccgctttccccacccgctgct 69 ||||||||||| |||||||||||| Sbjct: 163760 cccccgctttcaccacccgctgct 163783
>gb|AC025259.49| Homo sapiens 12 BAC RP11-1100L3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 212622 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 tgctgcagagctgggacccc 268 |||||||||||||||||||| Sbjct: 53473 tgctgcagagctgggacccc 53492
>gb|AC113611.3| Homo sapiens BAC clone RP11-421M20 from 4, complete sequence Length = 60597 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 cccccgctttccccacccgctgct 69 ||||||||||| |||||||||||| Sbjct: 1812 cccccgctttcaccacccgctgct 1835
>gb|AE004926.1| Pseudomonas aeruginosa PAO1, section 487 of 529 of the complete genome Length = 11624 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 accccggcggcgtgctgcag 256 |||||||||||||||||||| Sbjct: 7825 accccggcggcgtgctgcag 7844
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gctctcggcgctgcgccgca 227 |||||||||||||||||||| Sbjct: 3417979 gctctcggcgctgcgccgca 3417998
>gb|AF052584.1|AF052584 Malus domestica cultivar Fuji CONSTANS-like protein 1 (Col1) mRNA, complete cds Length = 1235 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 cgtcacctgcgaccgcgaca 317 |||||||||||||||||||| Sbjct: 294 cgtcacctgcgaccgcgaca 313
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cgtcgcggtgttcgcggtcg 176 |||||||||||||||||||| Sbjct: 424617 cgtcgcggtgttcgcggtcg 424598 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,590,056 Number of Sequences: 3902068 Number of extensions: 2590056 Number of successful extensions: 64046 Number of sequences better than 10.0: 83 Number of HSP's better than 10.0 without gapping: 84 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62445 Number of HSP's gapped (non-prelim): 1597 length of query: 389 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 367 effective length of database: 17,147,199,772 effective search space: 6293022316324 effective search space used: 6293022316324 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)