ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet47b04 |
|---|---|
| Clone Library Name | barley_pub |
>RPN6_SCHPO (Q9P7S2) Probable 26S proteasome regulatory subunit rpn6| Length = 421 Score = 50.1 bits (118), Expect = 2e-06 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 1/83 (1%) Frame = +2 Query: 167 AQEAKDASESILILYRVLEDPSSSSDAVRTK-EVAITNLTNYLTIENRAEELRNLLTQLR 343 A ++ D ++I + VL S + V + E A+TNL++ ENR +L L+ Q R Sbjct: 13 AVKSNDIEKAIDLYKEVLNKGVSKDEKVANEQEQALTNLSDLYVRENRHNDLAQLVQQSR 72 Query: 344 PFFALIPKAKTAKIVRGIIDAVS 412 P A KAK+AKIVR +ID S Sbjct: 73 PLMANFSKAKSAKIVRTLIDKFS 95
>PSD11_MOUSE (Q8BG32) 26S proteasome non-ATPase regulatory subunit 11 (26S| proteasome regulatory subunit S9) (26S proteasome regulatory subunit p44.5) Length = 421 Score = 47.0 bits (110), Expect = 2e-05 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 2/76 (2%) Frame = +2 Query: 182 DASESILILYRVLEDPSSSSD--AVRTKEVAITNLTNYLTIENRAEELRNLLTQLRPFFA 355 D SI IL+ +++ +D AV+ KE +I L + L +A EL LL +RPF Sbjct: 18 DREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLN 77 Query: 356 LIPKAKTAKIVRGIID 403 I KAK A++VR ++D Sbjct: 78 SISKAKAARLVRSLLD 93
>PSD11_HUMAN (O00231) 26S proteasome non-ATPase regulatory subunit 11 (26S| proteasome regulatory subunit S9) (26S proteasome regulatory subunit p44.5) Length = 421 Score = 47.0 bits (110), Expect = 2e-05 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 2/76 (2%) Frame = +2 Query: 182 DASESILILYRVLEDPSSSSD--AVRTKEVAITNLTNYLTIENRAEELRNLLTQLRPFFA 355 D SI IL+ +++ +D AV+ KE +I L + L +A EL LL +RPF Sbjct: 18 DREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLN 77 Query: 356 LIPKAKTAKIVRGIID 403 I KAK A++VR ++D Sbjct: 78 SISKAKAARLVRSLLD 93
>ARSA2_AQUAE (O66674) Putative arsenical pump-driving ATPase 2 (EC 3.6.3.16)| (Arsenite-translocating ATPase 2) (Arsenical resistance ATPase 2) (Arsenite-transporting ATPase 2) Length = 299 Score = 31.2 bits (69), Expect = 1.2 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 3/100 (3%) Frame = +2 Query: 146 TPESIAMAQEAKDASESILILYRVLEDPSSS-SDAVRTKEVAITNLTNYLTIE--NRAEE 316 T S A A + + + +L+L DP+ S SD T+ T L+ LT++ + EE Sbjct: 15 TTASSAFAVKLSEQGKKVLLLST---DPAHSLSDVFNTELQGETKLSENLTVKEIDLNEE 71 Query: 317 LRNLLTQLRPFFALIPKAKTAKIVRGIIDAVSKIPGTSDL 436 L+ +++ + +T + + GII ++ + PG D+ Sbjct: 72 LKEYRSRVFKLAEATLRKETLRELEGIIHSLEESPGIEDV 111
>FA48A_CHICK (Q5ZM71) Protein FAM48A| Length = 687 Score = 30.8 bits (68), Expect = 1.5 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 10/88 (11%) Frame = +2 Query: 50 ASSAPCHLCRKSAIARPGVLIMSVMQS-----SYLPATPESIAMAQEA---KDASE--SI 199 + S P C AIA G+ + ++ S S LPAT +S + A K+AS + Sbjct: 556 SGSNPMLGCNTGAIAPAGINLSGILPSGGLVPSALPATMQSASQAGSPFGLKNASNLRPL 615 Query: 200 LILYRVLEDPSSSSDAVRTKEVAITNLT 283 +L + PS+ A+ ++ A+ NLT Sbjct: 616 NLLQGSDQGPSNQDQALSAQQAAVINLT 643
>CLC4M_HYLSY (Q8HY11) C-type lectin domain family 4 member M (CD209 antigen-like| protein 1) (CD299 antigen) Length = 422 Score = 30.4 bits (67), Expect = 2.0 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 10/91 (10%) Frame = +2 Query: 197 ILILYRVLEDPSSSSDAVRTKEVAITNLTNY------LTIENRAEELRNLLTQLRPFFAL 358 + IL +V + PSS S ++V NLT L+ +++ +E+ LTQL+ Sbjct: 66 VAILVQVYKVPSSLSQEQSEQDVIYQNLTQLKAAVGELSEKSKLQEIYQELTQLKAAVGE 125 Query: 359 IP-KAKTAKIVRGIID---AVSKIPGTSDLQ 439 +P K+K +I + + +V ++P S LQ Sbjct: 126 LPEKSKQQEIYQELTQLKASVGELPEKSQLQ 156
>DNAK_BDEBA (Q6MNF8) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 637 Score = 30.0 bits (66), Expect = 2.6 Identities = 15/43 (34%), Positives = 26/43 (60%) Frame = +2 Query: 173 EAKDASESILILYRVLEDPSSSSDAVRTKEVAITNLTNYLTIE 301 E K A+E++ ++LE+ S+S D ++ + NLT+ LT E Sbjct: 553 EVKSANEAVAEAKKILENKSASGDELKGAFERLQNLTHKLTSE 595
>CLC4M_HYLCO (Q8HY10) C-type lectin domain family 4 member M (CD209 antigen-like| protein 1) (CD299 antigen) Length = 399 Score = 30.0 bits (66), Expect = 2.6 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 10/91 (10%) Frame = +2 Query: 197 ILILYRVLEDPSSSSDAVRTKEVAITNLTNY------LTIENRAEELRNLLTQLRPFFAL 358 + IL +V + PSS S ++V NLT L+ +++ +E+ LTQL+ Sbjct: 66 VAILVQVYKGPSSLSQEQSEQDVIYQNLTQLKAAVGELSEKSKLQEIYQELTQLKAAVGE 125 Query: 359 IP-KAKTAKIVRGII---DAVSKIPGTSDLQ 439 +P K++ +I + + AV ++P S LQ Sbjct: 126 LPEKSRLQEIYQELTRLKAAVGELPENSRLQ 156
>SYFB_SYNJB (Q2JHU3) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 825 Score = 29.6 bits (65), Expect = 3.4 Identities = 16/53 (30%), Positives = 27/53 (50%) Frame = +2 Query: 44 EAASSAPCHLCRKSAIARPGVLIMSVMQSSYLPATPESIAMAQEAKDASESIL 202 + S P + +A ARPG+L+ ++LPA +IA A + SE ++ Sbjct: 68 DLGSDRPATIVCGAANARPGILVAVATPGTHLPALSLTIAKADKRGVISEGMI 120
>CLC4M_GORGO (Q8HY06) C-type lectin domain family 4 member M (CD209 antigen-like| protein 1) (CD299 antigen) Length = 376 Score = 29.3 bits (64), Expect = 4.4 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 10/91 (10%) Frame = +2 Query: 197 ILILYRVLEDPSSSSDAVRTKEVAITNLTNY------LTIENRAEELRNLLTQLRPFFAL 358 + IL +V + PSS S ++ NLT L+ +++ +E+ LTQL+ Sbjct: 66 VAILVQVSKVPSSLSQEQSEQDAIYQNLTQLKAAVGELSEKSKLQEIYQELTQLKAAVGE 125 Query: 359 IP-KAKTAKIVRGIID---AVSKIPGTSDLQ 439 +P K+K +I + + AV ++P S LQ Sbjct: 126 LPEKSKLQEIYQELTQLKAAVGELPEKSKLQ 156
>SYNE2_HUMAN (Q8WXH0) Nesprin-2 (Nuclear envelope spectrin repeat protein 2)| (Syne-2) (Synaptic nuclear envelope protein 2) (Nucleus and actin connecting element protein) (NUANCE protein) Length = 6885 Score = 28.9 bits (63), Expect = 5.8 Identities = 13/61 (21%), Positives = 35/61 (57%) Frame = +2 Query: 218 LEDPSSSSDAVRTKEVAITNLTNYLTIENRAEELRNLLTQLRPFFALIPKAKTAKIVRGI 397 L++ SS+ ++ E + L+++LT+E R +++ + + L+ +PKA +++ + Sbjct: 1858 LKECFESSETKKSVEQKLQKLSDFLTLEGRNSKIKQVDSVLKHVKKHLPKAHVKELISWL 1917 Query: 398 I 400 + Sbjct: 1918 V 1918
>COMK_BACSU (P40396) Competence transcription factor (CTF) (Competence protein| K) Length = 192 Score = 28.9 bits (63), Expect = 5.8 Identities = 25/94 (26%), Positives = 33/94 (35%), Gaps = 1/94 (1%) Frame = +1 Query: 115 VCDAIIVSSCYP*VNCNGSGS*GCFRVHFNPLPCA*RPVFFFRCS-ENKRSCHYESDKLS 291 +C II C F V+ PL R FF S +++ YE K+S Sbjct: 30 ICSKIIEKDCV-------------FYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKIS 76 Query: 292 HHREQG*GA*ESVDPTQAIFCTDSQGKDRKDCAW 393 H VDP+ IF + R C W Sbjct: 77 HKPPI------MVDPSNQIFLFPTLSSTRPQCGW 104
>BICD1_HUMAN (Q96G01) Cytoskeleton-like bicaudal D protein homolog 1| Length = 975 Score = 28.9 bits (63), Expect = 5.8 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = +2 Query: 164 MAQEAKDASESILILYRVLEDPSSSSDAVRTKEVAITNLTNYL-TIENRAEELRNLLTQL 340 + E K E ++L LED A+R KE+A L L T++N E+ NL +L Sbjct: 199 LKHEIKRFEEETVLLNSQLED------AIRLKEIAEHQLEEALETLKNEREQKNNLRKEL 252 Query: 341 RPFFAL 358 + +L Sbjct: 253 SQYISL 258
>CLC4M_HUMAN (Q9H2X3) C-type lectin domain family 4 member M (CD209 antigen-like| protein 1) (Dendritic cell-specific ICAM-3-grabbing nonintegrin 2) (DC-SIGN2) (DC-SIGN-related protein) (DC-SIGNR) (Liver/lymph node-specific ICAM-3-grabbing nonintegrin) (L- Length = 399 Score = 28.5 bits (62), Expect = 7.6 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 10/91 (10%) Frame = +2 Query: 197 ILILYRVLEDPSSSSDAVRTKEVAITNLTNY------LTIENRAEELRNLLTQLRPFFAL 358 + IL +V + PSS S ++ NLT L+ +++ +E+ LTQL+ Sbjct: 66 VAILVQVSKVPSSLSQEQSEQDAIYQNLTQLKAAVGELSEKSKLQEIYQELTQLKAAVGE 125 Query: 359 IP-KAKTAKIVRGII---DAVSKIPGTSDLQ 439 +P K+K +I + + AV ++P S LQ Sbjct: 126 LPEKSKLQEIYQELTRLKAAVGELPEKSKLQ 156
>YDD3_SCHPO (O14206) Hypothetical protein C1B9.03c in chromosome I| Length = 389 Score = 28.5 bits (62), Expect = 7.6 Identities = 15/52 (28%), Positives = 25/52 (48%) Frame = +2 Query: 143 ATPESIAMAQEAKDASESILILYRVLEDPSSSSDAVRTKEVAITNLTNYLTI 298 A P+S+ + A + S+ +L R L A+R KE + +YLT+ Sbjct: 24 AIPKSMVIRSGASEVGRSLSLLTRDLRHMMEPHTAIRLKERKANKIKDYLTM 75
>GAG_EIAVY (P69732) Gag polyprotein [Contains: Matrix protein p15; Capsid| protein p26 (CA) (Major core protein p26); Nucleocapsid protein p11; p9] Length = 486 Score = 28.5 bits (62), Expect = 7.6 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +2 Query: 278 LTNYLTIENRAEELRNLLTQLRP 346 LT+ LTI+N EE RN + LRP Sbjct: 309 LTDTLTIQNANEECRNAMRHLRP 331
>GAG_EIAVC (P69731) Gag polyprotein [Contains: Matrix protein p15; Capsid| protein p26 (CA) (Major core protein p26); Nucleocapsid protein p11; p9] Length = 486 Score = 28.5 bits (62), Expect = 7.6 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +2 Query: 278 LTNYLTIENRAEELRNLLTQLRP 346 LT+ LTI+N EE RN + LRP Sbjct: 309 LTDTLTIQNANEECRNAMRHLRP 331
>GAG_EIAV9 (P69730) Gag polyprotein [Contains: Matrix protein p15; Capsid| protein p26 (CA) (Major core protein p26); Nucleocapsid protein p11; p9] Length = 486 Score = 28.5 bits (62), Expect = 7.6 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +2 Query: 278 LTNYLTIENRAEELRNLLTQLRP 346 LT+ LTI+N EE RN + LRP Sbjct: 309 LTDTLTIQNANEECRNAMRHLRP 331
>YAFY_ECOLI (P77365) Putative HTH-type transcriptional regulator yafY| Length = 285 Score = 28.5 bits (62), Expect = 7.6 Identities = 14/41 (34%), Positives = 17/41 (41%) Frame = +1 Query: 265 CHYESDKLSHHREQG*GA*ESVDPTQAIFCTDSQGKDRKDC 387 CHY HH EQ G +S P C + G+ R C Sbjct: 64 CHYRHCCHRHHSEQNRGVRQSRGPDPCHCCRTADGRWRSRC 104
>Y1576_METJA (Q58971) Hypothetical protein MJ1576| Length = 189 Score = 28.5 bits (62), Expect = 7.6 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 7/57 (12%) Frame = +2 Query: 269 ITNLTNYLTIENRAEELRNLLTQLRPFFALI-------PKAKTAKIVRGIIDAVSKI 418 IT L + + N AEE++N+ + R I P+ KT++ V+ ++DA+ +I Sbjct: 77 ITELRSSVLKANTAEEIQNIERESRNILGNILVAVENYPELKTSETVKELMDAIKEI 133
>HAP3_SCHPO (P36611) Transcriptional activator hap3| Length = 116 Score = 28.1 bits (61), Expect = 9.9 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%) Frame = +2 Query: 143 ATPESIAMAQEAKDASESILILYRVLEDPSSSSDAVRTKEVAITN-----LTNYLTIENR 307 A PE+ +++EAKD + + + +S + K IT N L EN Sbjct: 24 ALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGEDVLLALNTLGFENY 83 Query: 308 AEELRNLLTQLR 343 AE L+ LT+ R Sbjct: 84 AEVLKISLTKYR 95
>ERBB3_RAT (Q62799) Receptor tyrosine-protein kinase erbB-3 precursor (EC| 2.7.10.1) (c-erbB3) Length = 1339 Score = 28.1 bits (61), Expect = 9.9 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 7/58 (12%) Frame = -1 Query: 427 SSRYLGNSINDATHNLC-GLCLGNQ------CKKWPELGQQIPKLLSPVLYGEIVCQI 275 + R G + N H+ C G C G Q C+++ + G +P+ P++Y ++ Q+ Sbjct: 215 NGRCFGPNPNQCCHDECAGGCSGPQDTDCFACRRFNDSGACVPRCPEPLVYNKLTFQL 272
>POLG_BTMV (Q6XW15) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral gen Length = 3085 Score = 28.1 bits (61), Expect = 9.9 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 3/49 (6%) Frame = -2 Query: 429 EVPGILETASMMPRTIFAVF---ALGISAKNGLSWVNRFLSSSALFSMV 292 E P +L A PR I ++F AL ++AK+ W++R + SA+F+M+ Sbjct: 800 EDPYVLIMAMCSPRLIISLFNNGALELAAKH---WISRDKNVSAIFAML 845 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,725,770 Number of Sequences: 219361 Number of extensions: 1134388 Number of successful extensions: 3058 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3002 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3057 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
