ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet47a02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467368.1| Oryza sativa (japonica cultivar-group), mRNA 226 5e-56
2dbj|AK063491.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 5e-56
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 157 4e-35
4dbj|AP005825.3| Oryza sativa (japonica cultivar-group) genomic D... 157 4e-35
5dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic D... 157 4e-35
6dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 46 0.096
7dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 46 0.096
8emb|CR683839.2|CNS0FQLN Tetraodon nigroviridis full-length cDNA 44 0.38
9emb|AJ237705.1|AGA237705 Anopheles gambiae apy gene for putative... 44 0.38
10dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 44 0.38
11ref|XM_320562.2| Anopheles gambiae str. PEST ENSANGP00000008689 ... 44 0.38
12ref|NM_119816.3| Arabidopsis thaliana catalytic/ hydrolase AT4G3... 42 1.5
13ref|NM_179176.1| Arabidopsis thaliana catalytic/ hydrolase AT4G3... 42 1.5
14gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 42 1.5
15gb|AE008952.1| Agrobacterium tumefaciens str. C58 AT plasmid sec... 42 1.5
16gb|AE007898.1| Agrobacterium tumefaciens str. C58 plasmid AT, se... 42 1.5
17emb|CR648827.2|CNS0EZLT Tetraodon nigroviridis full-length cDNA 42 1.5
18gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 42 1.5
19emb|CR555306.1| Azoarcus sp. EbN1 complete genome 42 1.5
20emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.5
21gb|BT008719.1| Arabidopsis thaliana At4g36530 gene, complete cds 42 1.5
22gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 gen... 42 1.5
23gb|AC087192.14| Oryza sativa chromosome 10 BAC OSJNBa0005K07 gen... 42 1.5
24gb|AF370481.1|AF370481 Arabidopsis thaliana Unknown protein mRNA... 42 1.5
25dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
26emb|BX829195.1|CNS0A3E1 Arabidopsis thaliana Full-length cDNA Co... 42 1.5
27emb|BX826295.1|CNS0A2FG Arabidopsis thaliana Full-length cDNA Co... 42 1.5
28gb|AY087588.1| Arabidopsis thaliana clone 36845 mRNA, complete s... 42 1.5
29dbj|AB107223.1| Pseudomonas sp. MIS38 orf1, arfA, arfB, arfC, or... 42 1.5
30gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
31ref|XM_467501.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.9
32gb|AC134344.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
33gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
34emb|AJ249787.1|CPA249787 Cyanophora paradoxa mRNA for putative t... 40 5.9
35gb|AY026766.1| Pyrobaculum aerophilum conserved protein gene, co... 40 5.9
36gb|AE009795.1|AE009795 Pyrobaculum aerophilum strain IM2 section... 40 5.9
37gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome 40 5.9
38gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 5.9
39dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
40dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
41dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
42dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.9
43dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
44dbj|AK065315.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
45gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 5.9
46dbj|D16640.1|RICOSVP1 Oryza sativa (japonica cultivar-group) DNA... 40 5.9
47dbj|AB039433.1| Pseudomonas syringae gyrB gene for DNA gyrase su... 40 5.9
48dbj|AB016359.1| Pseudomonas syringae pv. morsprunorum gyrB gene ... 40 5.9
49dbj|AB016355.1| Pseudomonas syringae pv. mori gyrB gene for DNA ... 40 5.9 
>ref|XM_467368.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1539

 Score =  226 bits (114), Expect = 5e-56
 Identities = 180/202 (89%)
 Strand = Plus / Plus

                                                                       
Query: 229 ctgctcaagcattggagaggctgccgttcaaggcggacgggtacagcttctggacgtgga 288
           |||| ||||||||||||||| ||||||||||||| || || |||| ||||||||| ||||
Sbjct: 350 ctgcccaagcattggagaggttgccgttcaaggctgatggatacaacttctggacatgga 409

                                                                       
Query: 289 ggggccgcaggatacactacgtggagcaagggtccggccagcccatcgtgctcatccacg 348
           |||| ||| ||||||| ||||| ||||||||  | |||||||||||||||||||||||||
Sbjct: 410 ggggtcgccggatacattacgtcgagcaaggcgctggccagcccatcgtgctcatccacg 469

                                                                       
Query: 349 gcttcggcgcgtcggcgttccattggaggtacaacatcccggagctggccaagaagtaca 408
           | |||||||| || |||||||||||||||||||| || || |||||||||||||||||||
Sbjct: 470 gattcggcgcctccgcgttccattggaggtacaatataccagagctggccaagaagtaca 529

                                 
Query: 409 aggtgtacgccgtggacctgct 430
           ||||||||||| | ||||||||
Sbjct: 530 aggtgtacgccattgacctgct 551



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 136 tgatgatgcagaggagggacctattgaccaagggggt 172
           ||||||||||||||||||||||  |||||||||||||
Sbjct: 269 tgatgatgcagaggagggacctcgtgaccaagggggt 305
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>dbj|AK063491.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-C10, full
           insert sequence
          Length = 1540

 Score =  226 bits (114), Expect = 5e-56
 Identities = 180/202 (89%)
 Strand = Plus / Plus

                                                                       
Query: 229 ctgctcaagcattggagaggctgccgttcaaggcggacgggtacagcttctggacgtgga 288
           |||| ||||||||||||||| ||||||||||||| || || |||| ||||||||| ||||
Sbjct: 350 ctgcccaagcattggagaggttgccgttcaaggctgatggatacaacttctggacatgga 409

                                                                       
Query: 289 ggggccgcaggatacactacgtggagcaagggtccggccagcccatcgtgctcatccacg 348
           |||| ||| ||||||| ||||| ||||||||  | |||||||||||||||||||||||||
Sbjct: 410 ggggtcgccggatacattacgtcgagcaaggcgctggccagcccatcgtgctcatccacg 469

                                                                       
Query: 349 gcttcggcgcgtcggcgttccattggaggtacaacatcccggagctggccaagaagtaca 408
           | |||||||| || |||||||||||||||||||| || || |||||||||||||||||||
Sbjct: 470 gattcggcgcctccgcgttccattggaggtacaatataccagagctggccaagaagtaca 529

                                 
Query: 409 aggtgtacgccgtggacctgct 430
           ||||||||||| | ||||||||
Sbjct: 530 aggtgtacgccattgacctgct 551



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 136 tgatgatgcagaggagggacctattgaccaagggggt 172
           ||||||||||||||||||||||  |||||||||||||
Sbjct: 269 tgatgatgcagaggagggacctcgtgaccaagggggt 305
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  157 bits (79), Expect = 4e-35
 Identities = 127/143 (88%)
 Strand = Plus / Minus

                                                                            
Query: 236      agcattggagaggctgccgttcaaggcggacgggtacagcttctggacgtggaggggccg 295
                ||||||||||||| ||||||||||||| || || |||| ||||||||| |||||||| ||
Sbjct: 29119298 agcattggagaggttgccgttcaaggctgatggatacaacttctggacatggaggggtcg 29119239

                                                                            
Query: 296      caggatacactacgtggagcaagggtccggccagcccatcgtgctcatccacggcttcgg 355
                | ||||||| ||||| ||||||||  | |||||||||||||||||||||||||| |||||
Sbjct: 29119238 ccggatacattacgtcgagcaaggcgctggccagcccatcgtgctcatccacggattcgg 29119179

                                       
Query: 356      cgcgtcggcgttccattggaggt 378
                ||| || ||||||||||||||||
Sbjct: 29119178 cgcctccgcgttccattggaggt 29119156



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                        
Query: 375      aggtacaacatcccggagctggccaagaagtacaaggtgtacgccgtggacctgct 430
                |||||||| || || |||||||||||||||||||||||||||||| | ||||||||
Sbjct: 29118735 aggtacaatataccagagctggccaagaagtacaaggtgtacgccattgacctgct 29118680



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                     
Query: 136      tgatgatgcagaggagggacctattgaccaagggggt 172
                ||||||||||||||||||||||  |||||||||||||
Sbjct: 29119515 tgatgatgcagaggagggacctcgtgaccaagggggt 29119479



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 56       cgcttccgcggccgccctcc 75
                ||||||||||||||||||||
Sbjct: 29866675 cgcttccgcggccgccctcc 29866656



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 51       gcgtccgcttccgcggccgc 70
                ||||||||||||||||||||
Sbjct: 27552729 gcgtccgcttccgcggccgc 27552748
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>dbj|AP005825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0724B10
          Length = 169143

 Score =  157 bits (79), Expect = 4e-35
 Identities = 127/143 (88%)
 Strand = Plus / Minus

                                                                          
Query: 236    agcattggagaggctgccgttcaaggcggacgggtacagcttctggacgtggaggggccg 295
              ||||||||||||| ||||||||||||| || || |||| ||||||||| |||||||| ||
Sbjct: 165463 agcattggagaggttgccgttcaaggctgatggatacaacttctggacatggaggggtcg 165404

                                                                          
Query: 296    caggatacactacgtggagcaagggtccggccagcccatcgtgctcatccacggcttcgg 355
              | ||||||| ||||| ||||||||  | |||||||||||||||||||||||||| |||||
Sbjct: 165403 ccggatacattacgtcgagcaaggcgctggccagcccatcgtgctcatccacggattcgg 165344

                                     
Query: 356    cgcgtcggcgttccattggaggt 378
              ||| || ||||||||||||||||
Sbjct: 165343 cgcctccgcgttccattggaggt 165321



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                      
Query: 375    aggtacaacatcccggagctggccaagaagtacaaggtgtacgccgtggacctgct 430
              |||||||| || || |||||||||||||||||||||||||||||| | ||||||||
Sbjct: 164900 aggtacaatataccagagctggccaagaagtacaaggtgtacgccattgacctgct 164845



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                   
Query: 136    tgatgatgcagaggagggacctattgaccaagggggt 172
              ||||||||||||||||||||||  |||||||||||||
Sbjct: 165680 tgatgatgcagaggagggacctcgtgaccaagggggt 165644
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>dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0680A05
          Length = 168092

 Score =  157 bits (79), Expect = 4e-35
 Identities = 127/143 (88%)
 Strand = Plus / Minus

                                                                        
Query: 236  agcattggagaggctgccgttcaaggcggacgggtacagcttctggacgtggaggggccg 295
            ||||||||||||| ||||||||||||| || || |||| ||||||||| |||||||| ||
Sbjct: 9266 agcattggagaggttgccgttcaaggctgatggatacaacttctggacatggaggggtcg 9207

                                                                        
Query: 296  caggatacactacgtggagcaagggtccggccagcccatcgtgctcatccacggcttcgg 355
            | ||||||| ||||| ||||||||  | |||||||||||||||||||||||||| |||||
Sbjct: 9206 ccggatacattacgtcgagcaaggcgctggccagcccatcgtgctcatccacggattcgg 9147

                                   
Query: 356  cgcgtcggcgttccattggaggt 378
            ||| || ||||||||||||||||
Sbjct: 9146 cgcctccgcgttccattggaggt 9124



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                    
Query: 375  aggtacaacatcccggagctggccaagaagtacaaggtgtacgccgtggacctgct 430
            |||||||| || || |||||||||||||||||||||||||||||| | ||||||||
Sbjct: 8703 aggtacaatataccagagctggccaagaagtacaaggtgtacgccattgacctgct 8648



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 136  tgatgatgcagaggagggacctattgaccaagggggt 172
            ||||||||||||||||||||||  |||||||||||||
Sbjct: 9483 tgatgatgcagaggagggacctcgtgaccaagggggt 9447
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 44      gtccgtcgcgtccgcttccgcgg 66
               |||||||||||||||||||||||
Sbjct: 5493153 gtccgtcgcgtccgcttccgcgg 5493175
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 336     gtgctcatccacggcttcggcgc 358
               |||||||||||||||||||||||
Sbjct: 1295225 gtgctcatccacggcttcggcgc 1295203
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>emb|CR683839.2|CNS0FQLN Tetraodon nigroviridis full-length cDNA
          Length = 1048

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 411 gtgtacgccgtggacctgctgggctt 436
           ||||||||| ||||||||||||||||
Sbjct: 376 gtgtacgccctggacctgctgggctt 401
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>emb|AJ237705.1|AGA237705 Anopheles gambiae apy gene for putative apyrase protein
          Length = 3543

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 301 tacactacgtggagcaagggtc 322
           ||||||||||||||||||||||
Sbjct: 185 tacactacgtggagcaagggtc 164
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 46     ccgtcgcgtccgcttccgcggc 67
              ||||||||||||||||||||||
Sbjct: 109927 ccgtcgcgtccgcttccgcggc 109906
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>ref|XM_320562.2| Anopheles gambiae str. PEST ENSANGP00000008689
           (ENSANGG00000006545), partial mRNA
          Length = 837

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 301 tacactacgtggagcaagggtc 322
           ||||||||||||||||||||||
Sbjct: 23  tacactacgtggagcaagggtc 44
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>ref|NM_119816.3| Arabidopsis thaliana catalytic/ hydrolase AT4G36530 transcript
           variant AT4G36530.2 mRNA, complete cds
          Length = 1464

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                    
Query: 369 cattggaggtacaacatcccggagctggccaagaagtacaaggtgtacgccgtggac 425
           ||||||||||| ||||| || ||  |||| ||||| |||||||| |||||| |||||
Sbjct: 505 cattggaggtataacattcctgaattggctaagaaatacaaggtttacgccttggac 561
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>ref|NM_179176.1| Arabidopsis thaliana catalytic/ hydrolase AT4G36530 transcript
           variant AT4G36530.1 mRNA, complete cds
          Length = 1344

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                    
Query: 369 cattggaggtacaacatcccggagctggccaagaagtacaaggtgtacgccgtggac 425
           ||||||||||| ||||| || ||  |||| ||||| |||||||| |||||| |||||
Sbjct: 385 cattggaggtataacattcctgaattggctaagaaatacaaggtttacgccttggac 441
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 84     tccggccgccgctgcggcgtc 104
              |||||||||||||||||||||
Sbjct: 800504 tccggccgccgctgcggcgtc 800524
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>gb|AE008952.1| Agrobacterium tumefaciens str. C58 AT plasmid section 27 of 49 of
           the complete sequence
          Length = 11363

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 322 ccggccagcccatcgtgctcatccacggc 350
           ||||||||||||||||| || ||||||||
Sbjct: 225 ccggccagcccatcgtgttcgtccacggc 253
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>gb|AE007898.1| Agrobacterium tumefaciens str. C58 plasmid AT, section 26 of 50 of the
             complete sequence
          Length = 11009

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 322   ccggccagcccatcgtgctcatccacggc 350
             ||||||||||||||||| || ||||||||
Sbjct: 10172 ccggccagcccatcgtgttcgtccacggc 10200
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>emb|CR648827.2|CNS0EZLT Tetraodon nigroviridis full-length cDNA
          Length = 1139

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 389 ggagctggccaagaagtacaa 409
           |||||||||||||||||||||
Sbjct: 443 ggagctggccaagaagtacaa 463
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 85      ccggccgccgctgcggcgtcg 105
               |||||||||||||||||||||
Sbjct: 2802623 ccggccgccgctgcggcgtcg 2802643
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 378     tacaacatcccggagctggcc 398
               |||||||||||||||||||||
Sbjct: 1432976 tacaacatcccggagctggcc 1432956
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>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 323    cggccagcccatcgtgctcat 343
              |||||||||||||||||||||
Sbjct: 153698 cggccagcccatcgtgctcat 153718
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>gb|BT008719.1| Arabidopsis thaliana At4g36530 gene, complete cds
          Length = 966

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                    
Query: 369 cattggaggtacaacatcccggagctggccaagaagtacaaggtgtacgccgtggac 425
           ||||||||||| ||||| || ||  |||| ||||| |||||||| |||||| |||||
Sbjct: 169 cattggaggtataacattcctgaattggctaagaaatacaaggtttacgccttggac 225
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>gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 genomic sequence, complete
             sequence
          Length = 151991

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 71    cctccggtcctcgtccggccgccgc 95
             ||||||||| |||||||||||||||
Sbjct: 28749 cctccggtcgtcgtccggccgccgc 28773
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>gb|AC087192.14| Oryza sativa chromosome 10 BAC OSJNBa0005K07 genomic sequence,
            complete sequence
          Length = 113606

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 71   cctccggtcctcgtccggccgccgc 95
            ||||||||| |||||||||||||||
Sbjct: 2464 cctccggtcgtcgtccggccgccgc 2440
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>gb|AF370481.1|AF370481 Arabidopsis thaliana Unknown protein mRNA, complete cds
          Length = 1307

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                    
Query: 369 cattggaggtacaacatcccggagctggccaagaagtacaaggtgtacgccgtggac 425
           ||||||||||| ||||| || ||  |||| ||||| |||||||| |||||| |||||
Sbjct: 385 cattggaggtataacattcctgaattggctaagaaatacaaggtttacgccttggac 441
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 71       cctccggtcctcgtccggccgccgc 95
                ||||||||| |||||||||||||||
Sbjct: 19049915 cctccggtcgtcgtccggccgccgc 19049891
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>emb|BX829195.1|CNS0A3E1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL80ZA12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1184

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                    
Query: 369 cattggaggtacaacatcccggagctggccaagaagtacaaggtgtacgccgtggac 425
           ||||||||||| ||||| || ||  |||| ||||| |||||||| |||||| |||||
Sbjct: 345 cattggaggtataacattcctgaattggctaagaaatacaaggtttacgccttggac 401
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>emb|BX826295.1|CNS0A2FG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB11ZB03 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1197

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                    
Query: 369 cattggaggtacaacatcccggagctggccaagaagtacaaggtgtacgccgtggac 425
           ||||||||||| ||||| || ||  |||| ||||| |||||||| |||||| |||||
Sbjct: 361 cattggaggtataacattcctgaattggctaagaaatacaaggtttacgccttggac 417
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>gb|AY087588.1| Arabidopsis thaliana clone 36845 mRNA, complete sequence
          Length = 1301

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                    
Query: 369 cattggaggtacaacatcccggagctggccaagaagtacaaggtgtacgccgtggac 425
           ||||||||||| ||||| || ||  |||| ||||| |||||||| |||||| |||||
Sbjct: 381 cattggaggtataacattcctgaattggctaagaaatacaaggtttacgccttggac 437
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>dbj|AB107223.1| Pseudomonas sp. MIS38 orf1, arfA, arfB, arfC, orf5, orf6 genes for
            putative DNA binding protein, arthrofactin synthetase A,
            arthrofactin synthetase B, arthrofactin synthetase C,
            putative periplasmic protein, putative ABC transporter
            protein, complete and partial cds
          Length = 40430

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 351  ttcggcgcgtcggcgttccat 371
            |||||||||||||||||||||
Sbjct: 2419 ttcggcgcgtcggcgttccat 2439
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 71       cctccggtcctcgtccggccgccgc 95
                ||||||||| |||||||||||||||
Sbjct: 19061169 cctccggtcgtcgtccggccgccgc 19061145
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>ref|XM_467501.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 486

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  cgcttccgcggccgccctcc 75
           ||||||||||||||||||||
Sbjct: 207 cgcttccgcggccgccctcc 226
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>gb|AC134344.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0059K16,
              complete sequence
          Length = 139615

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 326    ccagcccatcgtgctcatcc 345
              ||||||||||||||||||||
Sbjct: 130628 ccagcccatcgtgctcatcc 130609
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>gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0006B22, complete sequence
          Length = 166052

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 326   ccagcccatcgtgctcatcc 345
             ||||||||||||||||||||
Sbjct: 49788 ccagcccatcgtgctcatcc 49769
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>emb|AJ249787.1|CPA249787 Cyanophora paradoxa mRNA for putative transketolase precursor (tktC
            gene)
          Length = 2595

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 341  catccacggcttcggcgcgtcggc 364
            |||| |||||||||||||||||||
Sbjct: 2238 catcgacggcttcggcgcgtcggc 2261
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>gb|AY026766.1| Pyrobaculum aerophilum conserved protein gene, complete cds
          Length = 1266

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 394 tggccaagaagtacaaggtgtacg 417
           ||||||||||||||||| ||||||
Sbjct: 272 tggccaagaagtacaagctgtacg 295
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>gb|AE009795.1|AE009795 Pyrobaculum aerophilum strain IM2 section 50 of 201 of the complete
            genome
          Length = 11576

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 394  tggccaagaagtacaaggtgtacg 417
            ||||||||||||||||| ||||||
Sbjct: 2151 tggccaagaagtacaagctgtacg 2128
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>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 411     gtgtacgccgtggacctgctgggc 434
               |||||||||| |||||||||||||
Sbjct: 1176609 gtgtacgccggggacctgctgggc 1176632



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 411   gtgtacgccgtggacctgctgggc 434
             |||||||||| |||||||||||||
Sbjct: 29492 gtgtacgccggggacctgctgggc 29515
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 364     cgttccattggaggtacaac 383
               ||||||||||||||||||||
Sbjct: 2006776 cgttccattggaggtacaac 2006795
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 326      ccagcccatcgtgctcatcc 345
                ||||||||||||||||||||
Sbjct: 14714334 ccagcccatcgtgctcatcc 14714315
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>dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0135D07
          Length = 170587

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    gcgtccgcttccgcggccgc 70
             ||||||||||||||||||||
Sbjct: 32398 gcgtccgcttccgcggccgc 32417
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>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ2056_H01
          Length = 123428

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     cgcttccgcggccgccctcc 75
              ||||||||||||||||||||
Sbjct: 123020 cgcttccgcggccgccctcc 123001
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 332    catcgtgctcatccacggct 351
              ||||||||||||||||||||
Sbjct: 389402 catcgtgctcatccacggct 389383
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>dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1008_D06
          Length = 112768

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    cgcttccgcggccgccctcc 75
             ||||||||||||||||||||
Sbjct: 23640 cgcttccgcggccgccctcc 23621
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>dbj|AK065315.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P05, full
           insert sequence
          Length = 2289

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 51  gcgtccgcttccgcggccgc 70
           ||||||||||||||||||||
Sbjct: 389 gcgtccgcttccgcggccgc 370
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 334     tcgtgctcatccacggcttcggcg 357
               |||||||||| |||||||||||||
Sbjct: 2113750 tcgtgctcatgcacggcttcggcg 2113773
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>dbj|D16640.1|RICOSVP1 Oryza sativa (japonica cultivar-group) DNA for VP1 protein, complete
            cds
          Length = 3743

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 88   gccgccgctgcggcgtcgggactg 111
            |||||||||||||| |||||||||
Sbjct: 3450 gccgccgctgcggcttcgggactg 3427
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>dbj|AB039433.1| Pseudomonas syringae gyrB gene for DNA gyrase subunit B, partial
           cds, strain:PDDCC 5795
          Length = 890

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 393 ctggccaagaagtacaaggt 412
           ||||||||||||||||||||
Sbjct: 567 ctggccaagaagtacaaggt 586
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>dbj|AB016359.1| Pseudomonas syringae pv. morsprunorum gyrB gene for DNA gyrase
           subunit B, partial cds
          Length = 612

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 393 ctggccaagaagtacaaggt 412
           ||||||||||||||||||||
Sbjct: 580 ctggccaagaagtacaaggt 599
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>dbj|AB016355.1| Pseudomonas syringae pv. mori gyrB gene for DNA gyrase subunit B,
           partial cds
          Length = 612

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 393 ctggccaagaagtacaaggt 412
           ||||||||||||||||||||
Sbjct: 580 ctggccaagaagtacaaggt 599


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,445,050
Number of Sequences: 3902068
Number of extensions: 2445050
Number of successful extensions: 45485
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44753
Number of HSP's gapped (non-prelim): 732
length of query: 439
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 417
effective length of database: 17,147,199,772
effective search space: 7150382304924
effective search space used: 7150382304924
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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