ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet46e10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 131 bits (66), Expect = 2e-27 Identities = 156/186 (83%) Strand = Plus / Minus Query: 164 gcccatagtcggcaacctcctcgacctccgcgggggcaatctccaccacaagctcgcgag 223 |||||||||||| ||||| |||||||| ||||| ||||| ||||||||||| ||||| || Sbjct: 5184860 gcccatagtcggtaacctactcgacctgcgcggcggcaacctccaccacaaactcgcaag 5184801 Query: 224 cctggcgcatgaccatggccccgtgatgacgctcaagctcggcacggtgagcaccgtgtt 283 |||||| || | ||||||||||||||||||||||||||| ||| || | ||||||||| Sbjct: 5184800 cctggctcacgcccatggccccgtgatgacgctcaagcttggcctcgtcaccaccgtgtt 5184741 Query: 284 tgtgtcctcccgggacgcggcatgggaggcgttcaccaagcacgaccggcgcattgctgc 343 | ||||| || ||||| || ||||| || ||| |||||||||| |||||| |||| || Sbjct: 5184740 catctcctcgcgcgacgctgcgtgggaagcattcgccaagcacgatcggcgccttgcggc 5184681 Query: 344 acgcac 349 ||||| Sbjct: 5184680 gcgcac 5184675
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 131 bits (66), Expect = 2e-27 Identities = 156/186 (83%) Strand = Plus / Minus Query: 164 gcccatagtcggcaacctcctcgacctccgcgggggcaatctccaccacaagctcgcgag 223 |||||||||||| ||||| |||||||| ||||| ||||| ||||||||||| ||||| || Sbjct: 5184842 gcccatagtcggtaacctactcgacctgcgcggcggcaacctccaccacaaactcgcaag 5184783 Query: 224 cctggcgcatgaccatggccccgtgatgacgctcaagctcggcacggtgagcaccgtgtt 283 |||||| || | ||||||||||||||||||||||||||| ||| || | ||||||||| Sbjct: 5184782 cctggctcacgcccatggccccgtgatgacgctcaagcttggcctcgtcaccaccgtgtt 5184723 Query: 284 tgtgtcctcccgggacgcggcatgggaggcgttcaccaagcacgaccggcgcattgctgc 343 | ||||| || ||||| || ||||| || ||| |||||||||| |||||| |||| || Sbjct: 5184722 catctcctcgcgcgacgctgcgtgggaagcattcgccaagcacgatcggcgccttgcggc 5184663 Query: 344 acgcac 349 ||||| Sbjct: 5184662 gcgcac 5184657
>emb|AL713947.3|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003_A04 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 124959 Score = 131 bits (66), Expect = 2e-27 Identities = 156/186 (83%) Strand = Plus / Plus Query: 164 gcccatagtcggcaacctcctcgacctccgcgggggcaatctccaccacaagctcgcgag 223 |||||||||||| ||||| |||||||| ||||| ||||| ||||||||||| ||||| || Sbjct: 78739 gcccatagtcggtaacctactcgacctgcgcggcggcaacctccaccacaaactcgcaag 78798 Query: 224 cctggcgcatgaccatggccccgtgatgacgctcaagctcggcacggtgagcaccgtgtt 283 |||||| || | ||||||||||||||||||||||||||| ||| || | ||||||||| Sbjct: 78799 cctggctcacgcccatggccccgtgatgacgctcaagcttggcctcgtcaccaccgtgtt 78858 Query: 284 tgtgtcctcccgggacgcggcatgggaggcgttcaccaagcacgaccggcgcattgctgc 343 | ||||| || ||||| || ||||| || ||| |||||||||| |||||| |||| || Sbjct: 78859 catctcctcgcgcgacgctgcgtgggaagcattcgccaagcacgatcggcgccttgcggc 78918 Query: 344 acgcac 349 ||||| Sbjct: 78919 gcgcac 78924
>ref|XM_483266.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1694 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 297 gacgcggcatgggaggcgttcaccaagcacgaccggcgc 335 |||||||| ||||||||||||||||||||||||||||| Sbjct: 276 gacgcggcgagggaggcgttcaccaagcacgaccggcgc 314
>ref|XM_483259.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1518 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 297 gacgcggcatgggaggcgttcaccaagcacgaccggcgc 335 |||||||| ||||||||||||||||||||||||||||| Sbjct: 259 gacgcggcgagggaggcgttcaccaagcacgaccggcgc 297
>gb|AF488522.1| Oryza sativa Cyt-P450 monooxygenase (PM-II) mRNA, complete cds Length = 1721 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 297 gacgcggcatgggaggcgttcaccaagcacgaccggcgc 335 |||||||| ||||||||||||||||||||||||||||| Sbjct: 256 gacgcggcgagggaggcgttcaccaagcacgaccggcgc 294
>gb|AF488521.1| Oryza sativa Cyt-P450 monooxygenase (PM-I) mRNA, complete cds Length = 1666 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 297 gacgcggcatgggaggcgttcaccaagcacgaccggcgc 335 |||||||| ||||||||||||||||||||||||||||| Sbjct: 289 gacgcggcgagggaggcgttcaccaagcacgaccggcgc 327
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 297 gacgcggcatgggaggcgttcaccaagcacgaccggcgc 335 |||||||| ||||||||||||||||||||||||||||| Sbjct: 25148190 gacgcggcgagggaggcgttcaccaagcacgaccggcgc 25148228 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 297 gacgcggcatgggaggcgttcaccaagcacgaccggcgc 335 |||||||| ||||||||||||||||||||||||||||| Sbjct: 25103792 gacgcggcgagggaggcgttcaccaagcacgaccggcgc 25103754 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 307 gggaggcgttcaccaagcacgaccggcgc 335 ||||||||||||||||||||||||||||| Sbjct: 25125678 gggaggcgttcaccaagcacgaccggcgc 25125706 Score = 44.1 bits (22), Expect = 0.39 Identities = 40/46 (86%) Strand = Plus / Plus Query: 288 tcctcccgggacgcggcatgggaggcgttcaccaagcacgaccggc 333 |||||| | |||||||| ||||||| ||||| ||||||||||||| Sbjct: 22869128 tcctccggcgacgcggcgagggaggccttcacgaagcacgaccggc 22869173
>dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1168A08 Length = 138135 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 297 gacgcggcatgggaggcgttcaccaagcacgaccggcgc 335 |||||||| ||||||||||||||||||||||||||||| Sbjct: 13313 gacgcggcgagggaggcgttcaccaagcacgaccggcgc 13351
>dbj|AP005254.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0064I19 Length = 111644 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 297 gacgcggcatgggaggcgttcaccaagcacgaccggcgc 335 |||||||| ||||||||||||||||||||||||||||| Sbjct: 52365 gacgcggcgagggaggcgttcaccaagcacgaccggcgc 52403 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 297 gacgcggcatgggaggcgttcaccaagcacgaccggcgc 335 |||||||| ||||||||||||||||||||||||||||| Sbjct: 7967 gacgcggcgagggaggcgttcaccaagcacgaccggcgc 7929 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 307 gggaggcgttcaccaagcacgaccggcgc 335 ||||||||||||||||||||||||||||| Sbjct: 29853 gggaggcgttcaccaagcacgaccggcgc 29881
>dbj|AP005245.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0025J22 Length = 175355 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 297 gacgcggcatgggaggcgttcaccaagcacgaccggcgc 335 |||||||| ||||||||||||||||||||||||||||| Sbjct: 159908 gacgcggcgagggaggcgttcaccaagcacgaccggcgc 159870
>dbj|AK102040.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033081G24, full insert sequence Length = 1694 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 297 gacgcggcatgggaggcgttcaccaagcacgaccggcgc 335 |||||||| ||||||||||||||||||||||||||||| Sbjct: 276 gacgcggcgagggaggcgttcaccaagcacgaccggcgc 314
>ref|XM_466336.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1657 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 205 tccaccacaagctcgcgagcctggcgcatgaccatggccccgtgatgacgctcaagctcg 264 |||||||||||||| | |||||||| | ||| ||||||||||||||||||||||||| Sbjct: 203 tccaccacaagctcagggacctggcgcgcgtccacggccccgtgatgacgctcaagctcg 262 Query: 265 gc 266 || Sbjct: 263 gc 264
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 205 tccaccacaagctcgcgagcctggcgcatgaccatggccccgtgatgacgctcaagctcg 264 |||||||||||||| | |||||||| | ||| ||||||||||||||||||||||||| Sbjct: 23249032 tccaccacaagctcagggacctggcgcgcgtccacggccccgtgatgacgctcaagctcg 23249091 Query: 265 gc 266 || Sbjct: 23249092 gc 23249093 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 172 tcggcaacctcctcgacctccgcgggggcaatctccaccacaagctcgcgagcct 226 ||||||||||||| ||||| || || ||||| |||||||||| ||||||| |||| Sbjct: 17521155 tcggcaacctcctggacctgcgtggcggcaacctccaccacacgctcgcgcgcct 17521101 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 307 gggaggcgttcaccaagcacgaccggcgc 335 |||||||||||||| ||||||||||||| Sbjct: 17521017 gggaggcgttcaccgcgcacgaccggcgc 17520989
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 205 tccaccacaagctcgcgagcctggcgcatgaccatggccccgtgatgacgctcaagctcg 264 |||||||||||||| | |||||||| | ||| ||||||||||||||||||||||||| Sbjct: 21759899 tccaccacaagctcagggacctggcgcgcgtccacggccccgtgatgacgctcaagctcg 21759958 Query: 265 gc 266 || Sbjct: 21759959 gc 21759960 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 240 ggccccgtgatgacgctcaagctcgg 265 |||||||| ||||||||||||||||| Sbjct: 21710071 ggccccgtcatgacgctcaagctcgg 21710096
>dbj|AP003623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0642B07 Length = 139297 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 205 tccaccacaagctcgcgagcctggcgcatgaccatggccccgtgatgacgctcaagctcg 264 |||||||||||||| | |||||||| | ||| ||||||||||||||||||||||||| Sbjct: 83794 tccaccacaagctcagggacctggcgcgcgtccacggccccgtgatgacgctcaagctcg 83853 Query: 265 gc 266 || Sbjct: 83854 gc 83855
>dbj|AP006069.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0025F02 Length = 156545 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 205 tccaccacaagctcgcgagcctggcgcatgaccatggccccgtgatgacgctcaagctcg 264 |||||||||||||| | |||||||| | ||| ||||||||||||||||||||||||| Sbjct: 141296 tccaccacaagctcagggacctggcgcgcgtccacggccccgtgatgacgctcaagctcg 141355 Query: 265 gc 266 || Sbjct: 141356 gc 141357 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 240 ggccccgtgatgacgctcaagctcgg 265 |||||||| ||||||||||||||||| Sbjct: 91468 ggccccgtcatgacgctcaagctcgg 91493
>dbj|AP005835.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0008E01 Length = 156856 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 205 tccaccacaagctcgcgagcctggcgcatgaccatggccccgtgatgacgctcaagctcg 264 |||||||||||||| | |||||||| | ||| ||||||||||||||||||||||||| Sbjct: 52298 tccaccacaagctcagggacctggcgcgcgtccacggccccgtgatgacgctcaagctcg 52357 Query: 265 gc 266 || Sbjct: 52358 gc 52359 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 240 ggccccgtgatgacgctcaagctcgg 265 |||||||| ||||||||||||||||| Sbjct: 2470 ggccccgtcatgacgctcaagctcgg 2495
>dbj|AK105913.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-H06, full insert sequence Length = 1657 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 205 tccaccacaagctcgcgagcctggcgcatgaccatggccccgtgatgacgctcaagctcg 264 |||||||||||||| | |||||||| | ||| ||||||||||||||||||||||||| Sbjct: 203 tccaccacaagctcagggacctggcgcgcgtccacggccccgtgatgacgctcaagctcg 262 Query: 265 gc 266 || Sbjct: 263 gc 264
>ref|XM_507287.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0064I19.10 mRNA Length = 1752 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 307 gggaggcgttcaccaagcacgaccggcgc 335 ||||||||||||||||||||||||||||| Sbjct: 307 gggaggcgttcaccaagcacgaccggcgc 335
>ref|XM_483262.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1735 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 307 gggaggcgttcaccaagcacgaccggcgc 335 ||||||||||||||||||||||||||||| Sbjct: 436 gggaggcgttcaccaagcacgaccggcgc 464
>dbj|AK099637.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059L23, full insert sequence Length = 1752 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 307 gggaggcgttcaccaagcacgaccggcgc 335 ||||||||||||||||||||||||||||| Sbjct: 307 gggaggcgttcaccaagcacgaccggcgc 335
>dbj|AK067905.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124B09, full insert sequence Length = 1991 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 307 gggaggcgttcaccaagcacgaccggcgc 335 ||||||||||||||||||||||||||||| Sbjct: 692 gggaggcgttcaccaagcacgaccggcgc 720
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 240 ggccccgtgatgacgctcaagctcggcacgg 270 |||||||||||| |||||||||||||||||| Sbjct: 16658902 ggccccgtgatgtcgctcaagctcggcacgg 16658872
>dbj|AP004684.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0012H03 Length = 163377 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 172 tcggcaacctcctcgacctccgcgggggcaatctccaccacaagctcgcgagcct 226 ||||||||||||| ||||| || || ||||| |||||||||| ||||||| |||| Sbjct: 152196 tcggcaacctcctggacctgcgtggcggcaacctccaccacacgctcgcgcgcct 152142 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 307 gggaggcgttcaccaagcacgaccggcgc 335 |||||||||||||| ||||||||||||| Sbjct: 152058 gggaggcgttcaccgcgcacgaccggcgc 152030
>dbj|AP005472.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0075M17 Length = 91422 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 172 tcggcaacctcctcgacctccgcgggggcaatctccaccacaagctcgcgagcct 226 ||||||||||||| ||||| || || ||||| |||||||||| ||||||| |||| Sbjct: 25601 tcggcaacctcctggacctgcgtggcggcaacctccaccacacgctcgcgcgcct 25547 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 307 gggaggcgttcaccaagcacgaccggcgc 335 |||||||||||||| ||||||||||||| Sbjct: 25463 gggaggcgttcaccgcgcacgaccggcgc 25435
>dbj|AP005308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0047B10 Length = 158798 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 240 ggccccgtgatgacgctcaagctcggcacgg 270 |||||||||||| |||||||||||||||||| Sbjct: 7596 ggccccgtgatgtcgctcaagctcggcacgg 7566
>dbj|AP005575.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1596_C06 Length = 124721 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 240 ggccccgtgatgacgctcaagctcggcacgg 270 |||||||||||| |||||||||||||||||| Sbjct: 67041 ggccccgtgatgtcgctcaagctcggcacgg 67011
>dbj|AK106229.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-A12, full insert sequence Length = 1679 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 172 tcggcaacctcctcgacctccgcgggggcaatctccaccacaagctcgcgagcct 226 ||||||||||||| ||||| || || ||||| |||||||||| ||||||| |||| Sbjct: 190 tcggcaacctcctggacctgcgtggcggcaacctccaccacacgctcgcgcgcct 244 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 307 gggaggcgttcaccaagcacgaccggcgc 335 |||||||||||||| ||||||||||||| Sbjct: 328 gggaggcgttcaccgcgcacgaccggcgc 356
>ref|XM_482839.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1694 Score = 44.1 bits (22), Expect = 0.39 Identities = 40/46 (86%) Strand = Plus / Plus Query: 288 tcctcccgggacgcggcatgggaggcgttcaccaagcacgaccggc 333 |||||| | |||||||| ||||||| ||||| ||||||||||||| Sbjct: 271 tcctccggcgacgcggcgagggaggccttcacgaagcacgaccggc 316
>ref|XM_466327.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1737 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 240 ggccccgtgatgacgctcaagctcgg 265 |||||||| ||||||||||||||||| Sbjct: 302 ggccccgtcatgacgctcaagctcgg 327
>gb|AC008635.6| Homo sapiens chromosome 19 clone CTB-174O21, complete sequence Length = 76250 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 27 atcacatcaacataaaataaaa 48 |||||||||||||||||||||| Sbjct: 63927 atcacatcaacataaaataaaa 63906
>gb|AE005728.1| Caulobacter crescentus CB15 section 54 of 359 of the complete genome Length = 12027 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 310 aggcgttcaccaagcacgaccggcgc 335 |||||||| ||||||||||||||||| Sbjct: 3719 aggcgttcgccaagcacgaccggcgc 3744
>gb|AC093503.2| Homo sapiens chromosome 19 clone CTB-12A17, complete sequence Length = 147598 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 27 atcacatcaacataaaataaaa 48 |||||||||||||||||||||| Sbjct: 114773 atcacatcaacataaaataaaa 114794
>dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0104B02 Length = 169588 Score = 44.1 bits (22), Expect = 0.39 Identities = 40/46 (86%) Strand = Plus / Plus Query: 288 tcctcccgggacgcggcatgggaggcgttcaccaagcacgaccggc 333 |||||| | |||||||| ||||||| ||||| ||||||||||||| Sbjct: 42966 tcctccggcgacgcggcgagggaggccttcacgaagcacgaccggc 43011
>dbj|AK072861.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141H24, full insert sequence Length = 1693 Score = 44.1 bits (22), Expect = 0.39 Identities = 40/46 (86%) Strand = Plus / Plus Query: 288 tcctcccgggacgcggcatgggaggcgttcaccaagcacgaccggc 333 |||||| | |||||||| ||||||| ||||| ||||||||||||| Sbjct: 270 tcctccggcgacgcggcgagggaggccttcacgaagcacgaccggc 315
>dbj|AK069701.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027B10, full insert sequence Length = 1737 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 240 ggccccgtgatgacgctcaagctcgg 265 |||||||| ||||||||||||||||| Sbjct: 302 ggccccgtcatgacgctcaagctcgg 327
>ref|NM_193526.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1575 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 172 tcggcaacctcctcgacctccgcgg 196 |||||||||| |||||||||||||| Sbjct: 146 tcggcaacctgctcgacctccgcgg 170
>gb|AC123872.4| Mus musculus BAC clone RP23-254P8 from 2, complete sequence Length = 185953 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 120 atgggaagaggtgccatgcggtggc 144 |||||||||||||||||| |||||| Sbjct: 115057 atgggaagaggtgccatgtggtggc 115033
>gb|AE011873.1| Xanthomonas axonopodis pv. citri str. 306, section 251 of 469 of the complete genome Length = 10565 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 330 cggcgcattgctgcacgcacc 350 ||||||||||||||||||||| Sbjct: 8834 cggcgcattgctgcacgcacc 8814
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 172 tcggcaacctcctcgacctccgcgg 196 |||||||||| |||||||||||||| Sbjct: 21339917 tcggcaacctgctcgacctccgcgg 21339893
>dbj|AP003267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0496H05 Length = 147817 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 172 tcggcaacctcctcgacctccgcgg 196 |||||||||| |||||||||||||| Sbjct: 61855 tcggcaacctgctcgacctccgcgg 61831
>dbj|AK069494.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025F12, full insert sequence Length = 1939 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 172 tcggcaacctcctcgacctccgcgg 196 |||||||||| |||||||||||||| Sbjct: 261 tcggcaacctgctcgacctccgcgg 285
>gb|AC153632.2| Mus musculus 6 BAC RP23-450O1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 182517 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 ataaaataaaacccaaatgga 58 ||||||||||||||||||||| Sbjct: 82037 ataaaataaaacccaaatgga 82017
>emb|AL928811.8| Mouse DNA sequence from clone RP23-74P23 on chromosome 2, complete sequence Length = 222061 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 120 atgggaagaggtgccatgcggtggc 144 |||||||||||||||||| |||||| Sbjct: 207350 atgggaagaggtgccatgtggtggc 207374
>gb|AC105958.11| Mus musculus chromosome 9, clone RP24-325P4, complete sequence Length = 195129 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 cacatcaacataaaataaaa 48 |||||||||||||||||||| Sbjct: 122201 cacatcaacataaaataaaa 122182
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ataaaacccaaatggagctg 62 |||||||||||||||||||| Sbjct: 4477128 ataaaacccaaatggagctg 4477109 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ataaaacccaaatggagctg 62 |||||||||||||||||||| Sbjct: 249504 ataaaacccaaatggagctg 249523
>emb|AL357045.10| Human DNA sequence from clone RP4-794L19 on chromosome 1 Contains the 3' end of the TBX15 gene for T-box 15, complete sequence Length = 141277 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 ataaaataaaacccaaatgg 57 |||||||||||||||||||| Sbjct: 93387 ataaaataaaacccaaatgg 93368
>ref|XM_969878.1| PREDICTED: Tribolium castaneum similar to CG2086-PB, isoform B (LOC663845), mRNA Length = 2757 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 cgtgtttgtgtcctcccggg 297 |||||||||||||||||||| Sbjct: 1049 cgtgtttgtgtcctcccggg 1068
>gb|DQ351275.1| Streptomyces sp. NRRL 30748 meridamycin biosynthetic gene cluster and flanking regions Length = 116831 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 acgcggcatgggaggcgttc 317 |||||||||||||||||||| Sbjct: 69567 acgcggcatgggaggcgttc 69586
>gb|AC011974.11| Homo sapiens, clone RP11-15L5, complete sequence Length = 153168 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 acataaaataaaacccaaat 55 |||||||||||||||||||| Sbjct: 103889 acataaaataaaacccaaat 103908
>gb|AC153626.5| Mus musculus 6 BAC RP23-245J24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190365 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 acatcaacataaaataaaac 49 |||||||||||||||||||| Sbjct: 142595 acatcaacataaaataaaac 142576
>gb|AC157101.9| Mus musculus 6 BAC RP24-549J13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 167974 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 acatcaacataaaataaaac 49 |||||||||||||||||||| Sbjct: 161607 acatcaacataaaataaaac 161626
>emb|AL591427.2| Zebrafish DNA sequence from clone BUSM1-219H16 in linkage group 7, complete sequence Length = 126202 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 cacatcaacataaaataaaa 48 |||||||||||||||||||| Sbjct: 36570 cacatcaacataaaataaaa 36551
>dbj|AP005714.3| Homo sapiens genomic DNA, chromosome 8q24, clone: KB857C2, complete sequence Length = 104612 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 acataaaataaaacccaaat 55 |||||||||||||||||||| Sbjct: 1498 acataaaataaaacccaaat 1517
>gb|AC073435.26| Mus musculus strain C57BL/6J chromosome 9 clone rp23-383h20, complete sequence Length = 221953 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 cacatcaacataaaataaaa 48 |||||||||||||||||||| Sbjct: 195814 cacatcaacataaaataaaa 195833 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,888,139 Number of Sequences: 3902068 Number of extensions: 3888139 Number of successful extensions: 85300 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84937 Number of HSP's gapped (non-prelim): 363 length of query: 456 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 434 effective length of database: 17,147,199,772 effective search space: 7441884701048 effective search space used: 7441884701048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
