ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet46e07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 182 bits (92), Expect = 6e-43 Identities = 161/184 (87%) Strand = Plus / Plus Query: 258 cagtttgtaccaaagcgatttcaaacagtgatggcacccctggaacgagcgattctccac 317 |||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||| Sbjct: 6855075 cagtttgtaccaaagcagtttcaaacagtgatggcacccctggaacaagcagttctccac 6855134 Query: 318 atgtggtctgttttggggaattactgatcgacttcgtcccaactgttagtggcgtgtcat 377 ||||||| || ||||| ||||| || || ||||||||||||||||| | ||| || |||| Sbjct: 6855135 atgtggtgtgctttggagaattgctcattgacttcgtcccaactgtcaatggtgtatcat 6855194 Query: 378 tgtcagatgcaccagccttcaagaaggctccagggggtgcaccggccaatgttgcagttg 437 | |||| || ||||||||||||||||||||||||| ||||| || ||||||||||||| Sbjct: 6855195 tagcagaagcgtcagccttcaagaaggctccagggggcgcacctgctaatgttgcagttg 6855254 Query: 438 gaat 441 |||| Sbjct: 6855255 gaat 6855258 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 218 ccgctcgcctccgccgcgcgc 238 ||||||||||||||||||||| Sbjct: 24144653 ccgctcgcctccgccgcgcgc 24144633
>dbj|AP005522.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0479H10 Length = 139874 Score = 182 bits (92), Expect = 6e-43 Identities = 161/184 (87%) Strand = Plus / Plus Query: 258 cagtttgtaccaaagcgatttcaaacagtgatggcacccctggaacgagcgattctccac 317 |||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||| Sbjct: 44600 cagtttgtaccaaagcagtttcaaacagtgatggcacccctggaacaagcagttctccac 44659 Query: 318 atgtggtctgttttggggaattactgatcgacttcgtcccaactgttagtggcgtgtcat 377 ||||||| || ||||| ||||| || || ||||||||||||||||| | ||| || |||| Sbjct: 44660 atgtggtgtgctttggagaattgctcattgacttcgtcccaactgtcaatggtgtatcat 44719 Query: 378 tgtcagatgcaccagccttcaagaaggctccagggggtgcaccggccaatgttgcagttg 437 | |||| || ||||||||||||||||||||||||| ||||| || ||||||||||||| Sbjct: 44720 tagcagaagcgtcagccttcaagaaggctccagggggcgcacctgctaatgttgcagttg 44779 Query: 438 gaat 441 |||| Sbjct: 44780 gaat 44783
>emb|CT573216.1| Medicago truncatula chromosome 5 clone mte1-79f1, COMPLETE SEQUENCE Length = 117869 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 353 gtcccaactgttagtggcgtgtcattgtcagatgcaccagccttcaagaaggctccaggg 412 |||||||||||||||||| | || ||| | || |||||||| || || ||||||||||| Sbjct: 68414 gtcccaactgttagtggcctttctttggctgacgcaccagcatttaaaaaggctccaggt 68355 Query: 413 ggtgcaccggccaatgttgc 432 ||||| || || |||||||| Sbjct: 68354 ggtgctcctgctaatgttgc 68335
>emb|AL929554.20| Human DNA sequence from clone RP11-350O14 on chromosome 9 Contains the 3' end of the MAN1B1 gene for mannosidase alpha class 1B member 1, the DPP7 gene for dipeptidylpeptidase 7, the GRIN1 gene for glutamate receptor ionotropic N-methyl D-aspartate 1, a novel gene, the gene for anaphase-promoting complex subunit 2 (ANAPC2), the SSNA1 gene for Sjogren's syndrome nuclear autoantigen 1, three novel genes (FLJ90254), a novel pseudogene, the 5' end of the gene for NADPH-dependent FMN and FAD containing oxidoreductase (NR1) and thirteen CpG islands, complete sequence Length = 119883 Score = 46.1 bits (23), Expect = 0.096 Identities = 26/27 (96%) Strand = Plus / Minus Query: 144 ccccgccctgcgccgcgggccactgcc 170 |||||||||||||||| |||||||||| Sbjct: 74197 ccccgccctgcgccgccggccactgcc 74171
>emb|Z32774.1|HSNMDAR1C H.sapiens gene for N-methyl-D-aspartate receptor R1 exons 6-21 Length = 13440 Score = 46.1 bits (23), Expect = 0.096 Identities = 26/27 (96%) Strand = Plus / Minus Query: 144 ccccgccctgcgccgcgggccactgcc 170 |||||||||||||||| |||||||||| Sbjct: 6118 ccccgccctgcgccgccggccactgcc 6092
>gb|AC158661.7| Mus musculus 6 BAC RP23-31E23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 181763 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 130 tctccgcgcggcggccccgccc 151 |||||||||||||||||||||| Sbjct: 122640 tctccgcgcggcggccccgccc 122619
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 221 ctcgcctccgccgcgcgcgcgc 242 |||||||||||||||||||||| Sbjct: 1955414 ctcgcctccgccgcgcgcgcgc 1955435 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 ctcccctcctccccgccgcc 189 |||||||||||||||||||| Sbjct: 30739643 ctcccctcctccccgccgcc 30739624
>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0026E05 Length = 159860 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 221 ctcgcctccgccgcgcgcgcgc 242 |||||||||||||||||||||| Sbjct: 5622 ctcgcctccgccgcgcgcgcgc 5643
>dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0081C13 Length = 144624 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 221 ctcgcctccgccgcgcgcgcgc 242 |||||||||||||||||||||| Sbjct: 94975 ctcgcctccgccgcgcgcgcgc 94996
>ref|XM_483223.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1317 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 223 cgcctccgccgcgcgcgcgccgctc 247 |||| |||||||||||||||||||| Sbjct: 435 cgccgccgccgcgcgcgcgccgctc 459
>gb|AC079349.6| Homo sapiens BAC clone RP11-436A7 from 4, complete sequence Length = 193632 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 421 ggccaatgttgcagttggaat 441 ||||||||||||||||||||| Sbjct: 26529 ggccaatgttgcagttggaat 26509
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 135 gcgcggcggccccgccctgcgccgc 159 |||||||||||| |||||||||||| Sbjct: 1271458 gcgcggcggcccggccctgcgccgc 1271434
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 223 cgcctccgccgcgcgcgcgccgctc 247 |||| |||||||||||||||||||| Sbjct: 24898724 cgccgccgccgcgcgcgcgccgctc 24898748 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 ctcccctcctccccgccgcc 189 |||||||||||||||||||| Sbjct: 2023559 ctcccctcctccccgccgcc 2023540
>gb|AC007496.6| Homo sapiens chromosome 16 clone RP11-357N13, complete sequence Length = 198417 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 318 atgtggtctgttttggggaat 338 ||||||||||||||||||||| Sbjct: 167471 atgtggtctgttttggggaat 167451
>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417G12 Length = 163568 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 218 ccgctcgcctccgccgcgcgc 238 ||||||||||||||||||||| Sbjct: 78111 ccgctcgcctccgccgcgcgc 78091
>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0429G06 Length = 158321 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 218 ccgctcgcctccgccgcgcgc 238 ||||||||||||||||||||| Sbjct: 154346 ccgctcgcctccgccgcgcgc 154326
>dbj|AP004190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1506_F01 Length = 121202 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 223 cgcctccgccgcgcgcgcgccgctc 247 |||| |||||||||||||||||||| Sbjct: 103170 cgccgccgccgcgcgcgcgccgctc 103194
>dbj|AP003883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1134_H03 Length = 135914 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 223 cgcctccgccgcgcgcgcgccgctc 247 |||| |||||||||||||||||||| Sbjct: 439 cgccgccgccgcgcgcgcgccgctc 463
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 227 tccgccgcgcgcgcgccgctc 247 ||||||||||||||||||||| Sbjct: 999957 tccgccgcgcgcgcgccgctc 999977 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 cgccgcgcgcgcgccgctcc 248 |||||||||||||||||||| Sbjct: 2594519 cgccgcgcgcgcgccgctcc 2594538
>ref|XM_511166.1| PREDICTED: Pan troglodytes hypothetical protein XP_511166 (LOC454311), mRNA Length = 2719 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 cctccgccgcgcgcgcgccg 244 |||||||||||||||||||| Sbjct: 67 cctccgccgcgcgcgcgccg 48
>ref|XM_479974.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1700 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 ctcccctcctccccgccgcc 189 |||||||||||||||||||| Sbjct: 173 ctcccctcctccccgccgcc 154
>ref|XM_467670.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2545 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 ctcccctcctccccgccgcc 189 |||||||||||||||||||| Sbjct: 297 ctcccctcctccccgccgcc 278
>ref|XM_473573.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1776 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 tcgcctccgccgcgcgcgcg 241 |||||||||||||||||||| Sbjct: 1213 tcgcctccgccgcgcgcgcg 1194
>gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055D24 map C535, complete sequence Length = 174759 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 ctcgccggcagcgacagcac 34 |||||||||||||||||||| Sbjct: 18098 ctcgccggcagcgacagcac 18117
>gb|AC138002.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0011I07 map S10207, complete sequence Length = 123847 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ctcgccggcagcgacagcac 34 |||||||||||||||||||| Sbjct: 8703 ctcgccggcagcgacagcac 8684
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 ccgccgcgcgcgcgccgctc 247 |||||||||||||||||||| Sbjct: 366825 ccgccgcgcgcgcgccgctc 366806
>gb|AC099705.7| Mus musculus chromosome 1, clone RP23-256I3, complete sequence Length = 166683 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 cctcccctcctccccgccgc 188 |||||||||||||||||||| Sbjct: 68023 cctcccctcctccccgccgc 68004
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 gcgcggcggccccgccctgc 154 |||||||||||||||||||| Sbjct: 604444 gcgcggcggccccgccctgc 604425
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 ccgccgcgcgcgcgccgctc 247 |||||||||||||||||||| Sbjct: 1097477 ccgccgcgcgcgcgccgctc 1097458
>gb|AC157491.12| Mus musculus chromosome 8, clone RP24-289G15, complete sequence Length = 168377 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 tccacatgtggtctgttttg 332 |||||||||||||||||||| Sbjct: 25706 tccacatgtggtctgttttg 25725
>gb|BC064609.1| Homo sapiens hypothetical protein LOC197322, mRNA (cDNA clone IMAGE:5548791), partial cds Length = 1562 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 cctccgccgcgcgcgcgccg 244 |||||||||||||||||||| Sbjct: 44 cctccgccgcgcgcgcgccg 25
>ref|XM_798245.1| Trypanosoma cruzi strain CL Brener protein kinase (Tc00.1047053503825.19) partial mRNA Length = 1402 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 cagcacaatccgcttaccac 48 |||||||||||||||||||| Sbjct: 61 cagcacaatccgcttaccac 80
>ref|XM_807065.1| Trypanosoma cruzi strain CL Brener protein kinase (Tc00.1047053509775.9) partial mRNA Length = 1680 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 cagcacaatccgcttaccac 48 |||||||||||||||||||| Sbjct: 61 cagcacaatccgcttaccac 80
>gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0074L11, complete sequence Length = 180703 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 cctcctccccgccgcctcgc 193 |||||||||||||||||||| Sbjct: 63193 cctcctccccgccgcctcgc 63174
>gb|BC028399.1| Homo sapiens hypothetical protein LOC197322, mRNA (cDNA clone MGC:33480 IMAGE:4812335), complete cds Length = 2461 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 cctccgccgcgcgcgcgccg 244 |||||||||||||||||||| Sbjct: 68 cctccgccgcgcgcgcgccg 49
>emb|BX572101.1| Prochlorococcus marinus MIT9313 complete genome; segment 7/7 Length = 318136 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 cgccctgcgccgcgggccac 166 |||||||||||||||||||| Sbjct: 186254 cgccctgcgccgcgggccac 186235
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 ccgccgcgcgcgcgccgctc 247 |||||||||||||||||||| Sbjct: 978459 ccgccgcgcgcgcgccgctc 978440
>emb|BX648465.1|HSM808613 Homo sapiens mRNA; cDNA DKFZp686C1511 (from clone DKFZp686C1511) Length = 5670 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 168 gcctcccctcctccccgccgcctc 191 ||||||||||||| |||||||||| Sbjct: 258 gcctcccctcctcgccgccgcctc 235
>gb|AC156980.9| Mus musculus chromosome 1, clone RP23-191A12, complete sequence Length = 224673 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 cctcccctcctccccgccgc 188 |||||||||||||||||||| Sbjct: 47273 cctcccctcctccccgccgc 47254
>gb|AF462207.1| Narcissus pseudonarcissus putative methyltransferase protein mRNA, partial cds Length = 382 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 385 tgcaccagccttcaagaaggctccaggg 412 ||||| ||||| |||||||||||||||| Sbjct: 50 tgcacaagcctccaagaaggctccaggg 77
>gb|AC068951.18| Oryza sativa chromosome 10 BAC OSJNBa0042E19 genomic sequence, complete sequence Length = 149978 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 cctccgccgcgcgcgcgccgctcc 248 |||||||||| ||||||||||||| Sbjct: 109363 cctccgccgcccgcgcgccgctcc 109340
>ref|NM_174917.1| Homo sapiens hypothetical protein LOC197322 (LOC197322), mRNA Length = 3555 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 cctccgccgcgcgcgcgccg 244 |||||||||||||||||||| Sbjct: 25 cctccgccgcgcgcgcgccg 6
>gb|L07561.2|CREDNAPL Chlamydomonas reinhardtii CPH1 (CPH1) gene, complete cds Length = 7203 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 ctccgccgcgcgcgcgccgc 245 |||||||||||||||||||| Sbjct: 5261 ctccgccgcgcgcgcgccgc 5242
>dbj|AK075499.1| Homo sapiens cDNA PSEC0197 fis, clone HEMBA1001490, weakly similar to PEROXISOMAL-COENZYME A SYNTHETASE (EC 6.-.-.-) Length = 3555 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 cctccgccgcgcgcgcgccg 244 |||||||||||||||||||| Sbjct: 25 cctccgccgcgcgcgcgccg 6
>gb|AY028431.1| Burkholderia cepacia genomovar III putative type III secretion gene cluster, complete sequence Length = 34600 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cccgccgcctcgcgtcggcg 200 |||||||||||||||||||| Sbjct: 30894 cccgccgcctcgcgtcggcg 30875
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 ccgccgcgcgcgcgccgctc 247 |||||||||||||||||||| Sbjct: 1367269 ccgccgcgcgcgcgccgctc 1367250
>gb|BC072391.1| Homo sapiens hypothetical protein LOC197322, mRNA (cDNA clone MGC:90152 IMAGE:5728307), complete cds Length = 2489 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 cctccgccgcgcgcgcgccg 244 |||||||||||||||||||| Sbjct: 26 cctccgccgcgcgcgcgccg 7
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 tcgcctccgccgcgcgcgcg 241 |||||||||||||||||||| Sbjct: 28845064 tcgcctccgccgcgcgcgcg 28845045
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 cctcctccccgccgcctcgc 193 |||||||||||||||||||| Sbjct: 21711140 cctcctccccgccgcctcgc 21711121 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ctcgccggcagcgacagcac 34 |||||||||||||||||||| Sbjct: 9000129 ctcgccggcagcgacagcac 9000110
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 cctccgccgcgcgcgcgccgctcc 248 |||||||||| ||||||||||||| Sbjct: 16491264 cctccgccgcccgcgcgccgctcc 16491241
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 ccactgcctcccctcctccccgcc 186 |||||| ||||||||||||||||| Sbjct: 14795253 ccactggctcccctcctccccgcc 14795276
>gb|AC135782.4| Homo sapiens chromosome 16 clone CTD-2555A7, complete sequence Length = 163550 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 cctccgccgcgcgcgcgccg 244 |||||||||||||||||||| Sbjct: 127348 cctccgccgcgcgcgcgccg 127329
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 cccctcctccccgccgcctc 191 |||||||||||||||||||| Sbjct: 5109648 cccctcctccccgccgcctc 5109629
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 cgcgcggcggccccgccctg 153 |||||||||||||||||||| Sbjct: 4765417 cgcgcggcggccccgccctg 4765436 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 cgccgcgcgcgcgccgctcc 248 |||||||||||||||||||| Sbjct: 126814 cgccgcgcgcgcgccgctcc 126795
>gb|AF158635.1|AF158635 Triticum ventricosum V6 (V6) gene, partial cds Length = 5712 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 232 cgcgcgcgcgccgctccagaagtccgca 259 ||||||||||||||||||| ||| |||| Sbjct: 397 cgcgcgcgcgccgctccagcagtgcgca 370
>dbj|AP004880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0487D09 Length = 161531 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 ctcccctcctccccgccgcc 189 |||||||||||||||||||| Sbjct: 79790 ctcccctcctccccgccgcc 79771
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 192 gcgtcggcggcaggcgcttcttcc 215 ||||||||||||||||| |||||| Sbjct: 2555709 gcgtcggcggcaggcgcatcttcc 2555686
>gb|AC010643.5|AC010643 Homo sapiens chromosome 19 clone LLNLR-254A7, complete sequence Length = 38902 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 ccactgcctcccctcctccc 182 |||||||||||||||||||| Sbjct: 12425 ccactgcctcccctcctccc 12406
>dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0707C02 Length = 163609 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 ccactgcctcccctcctccccgcc 186 |||||| ||||||||||||||||| Sbjct: 80642 ccactggctcccctcctccccgcc 80665
>dbj|AP003896.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1613_G04 Length = 135357 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 ctcccctcctccccgccgcc 189 |||||||||||||||||||| Sbjct: 17089 ctcccctcctccccgccgcc 17070
>dbj|AP003743.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_E12 Length = 119691 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 cccctcctccccgccgcctc 191 |||||||||||||||||||| Sbjct: 65815 cccctcctccccgccgcctc 65796
>dbj|AP005784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0014G10 Length = 164147 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 ccactgcctcccctcctccccgcc 186 |||||| ||||||||||||||||| Sbjct: 3592 ccactggctcccctcctccccgcc 3615
>dbj|AP005620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0680F05 Length = 185495 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 ctcccctcctccccgccgcc 189 |||||||||||||||||||| Sbjct: 148757 ctcccctcctccccgccgcc 148738
>dbj|AK119737.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-D08, full insert sequence Length = 1152 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 ccactgcctcccctcctccccgcc 186 |||||| ||||||||||||||||| Sbjct: 159 ccactggctcccctcctccccgcc 182
>dbj|AK106787.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-A02, full insert sequence Length = 2044 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 tcgcctccgccgcgcgcgcg 241 |||||||||||||||||||| Sbjct: 1285 tcgcctccgccgcgcgcgcg 1266
>dbj|AK102381.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092B15, full insert sequence Length = 2544 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 ctcccctcctccccgccgcc 189 |||||||||||||||||||| Sbjct: 296 ctcccctcctccccgccgcc 277
>dbj|AK072535.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133G14, full insert sequence Length = 1700 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 ctcccctcctccccgccgcc 189 |||||||||||||||||||| Sbjct: 173 ctcccctcctccccgccgcc 154
>dbj|AK066946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089G05, full insert sequence Length = 575 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 cctccgccgcgcgcgcgccgctcc 248 |||||||||| ||||||||||||| Sbjct: 65 cctccgccgcccgcgcgccgctcc 42
>dbj|AK066319.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067A17, full insert sequence Length = 2156 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 cctcctccccgccgcctcgc 193 |||||||||||||||||||| Sbjct: 170 cctcctccccgccgcctcgc 189
>gb|AC005695.1|AC005695 Homo sapiens chromosome 17, clone hRPK.85_B_7, complete sequence Length = 173717 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 168 gcctcccctcctccccgccgcctc 191 ||||||||||||| |||||||||| Sbjct: 41026 gcctcccctcctcgccgccgcctc 41049
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 cctccgccgcgcgcgcgccgctcc 248 |||||||||| ||||||||||||| Sbjct: 16499505 cctccgccgcccgcgcgccgctcc 16499482
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 cctcctccccgccgcctcgc 193 |||||||||||||||||||| Sbjct: 22021339 cctcctccccgccgcctcgc 22021320 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ctcgccggcagcgacagcac 34 |||||||||||||||||||| Sbjct: 9071826 ctcgccggcagcgacagcac 9071807
>emb|AL606640.4|OSJN00071 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019K04, complete sequence Length = 154865 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 tcgcctccgccgcgcgcgcg 241 |||||||||||||||||||| Sbjct: 57126 tcgcctccgccgcgcgcgcg 57107
>gb|L22218.1|MUSKCHANN Mus musculus cardiac KV1.5 delayed rectifier K+ channel protein mRNA, complete cds Length = 2912 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 gccactgcctcccctcctcc 181 |||||||||||||||||||| Sbjct: 368 gccactgcctcccctcctcc 349 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,276,227 Number of Sequences: 3902068 Number of extensions: 3276227 Number of successful extensions: 80328 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76991 Number of HSP's gapped (non-prelim): 3337 length of query: 442 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 420 effective length of database: 17,147,199,772 effective search space: 7201823904240 effective search space used: 7201823904240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
