ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet46c02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_463631.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1101 Score = 95.6 bits (48), Expect = 1e-16 Identities = 75/84 (89%) Strand = Plus / Plus Query: 309 ggtggcggacgagcacaagacggtgatcatgacgtcggtgaacgaggcgtgggcggcgga 368 |||||| ||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct: 288 ggtggccgacgagcacaagaacatcatcatgacgtcggtgaacgaggcgtgggcggcgcc 347 Query: 369 gggctcgctgctggacctcttcct 392 ||| |||||||||||||| ||||| Sbjct: 348 ggggtcgctgctggacctgttcct 371 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 49 aaccagctggtgtcgctcctcctcgggg 76 ||||||||||||||| | |||||||||| Sbjct: 25 aaccagctggtgtcgtttctcctcgggg 52
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 95.6 bits (48), Expect = 1e-16 Identities = 75/84 (89%) Strand = Plus / Plus Query: 309 ggtggcggacgagcacaagacggtgatcatgacgtcggtgaacgaggcgtgggcggcgga 368 |||||| ||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct: 40186661 ggtggccgacgagcacaagaacatcatcatgacgtcggtgaacgaggcgtgggcggcgcc 40186720 Query: 369 gggctcgctgctggacctcttcct 392 ||| |||||||||||||| ||||| Sbjct: 40186721 ggggtcgctgctggacctgttcct 40186744 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 297 gctgctgcgggaggtggcggacgagcacaagacggtgatcatgacgtcggtgaacgaggc 356 |||||||| ||||||||| ||| |||||||||||||||| |||||||||||||| || Sbjct: 40199637 gctgctgccggaggtggccatggaggacaagacggtgatcatcacgtcggtgaacgacgc 40199696 Query: 357 gtgggcggcggagggctcgctgctggacctcttcc 391 |||||||||| |||||| || || |||||||||| Sbjct: 40199697 gtgggcggcgccgggctccctcctcgacctcttcc 40199731 Score = 83.8 bits (42), Expect = 4e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 327 gacggtgatcatgacgtcggtgaacgaggcgtgggcggcggagggctcgctgctggac 384 |||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||| Sbjct: 40208742 gacggtgatcatgacgtcggtgaacgaggcgtgggcggcgccggggtcgctgatggac 40208799 Score = 71.9 bits (36), Expect = 1e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 327 gacggtgatcatgacgtcggtgaacgaggcgtgggcggcg 366 |||||||||||| ||||||||||||||||||||||||||| Sbjct: 40205253 gacggtgatcatcacgtcggtgaacgaggcgtgggcggcg 40205292 Score = 56.0 bits (28), Expect = 9e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 327 gacggtgatcatgacgtcggtgaacgaggcgt 358 |||||||||||| ||||||||||||||||||| Sbjct: 40195850 gacggtgatcatcacgtcggtgaacgaggcgt 40195881 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 49 aaccagctggtgtcgctcctcctcgggg 76 ||||||||||||||| | |||||||||| Sbjct: 40186292 aaccagctggtgtcgtttctcctcgggg 40186319
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0678F11 Length = 154292 Score = 95.6 bits (48), Expect = 1e-16 Identities = 75/84 (89%) Strand = Plus / Plus Query: 309 ggtggcggacgagcacaagacggtgatcatgacgtcggtgaacgaggcgtgggcggcgga 368 |||||| ||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct: 129745 ggtggccgacgagcacaagaacatcatcatgacgtcggtgaacgaggcgtgggcggcgcc 129804 Query: 369 gggctcgctgctggacctcttcct 392 ||| |||||||||||||| ||||| Sbjct: 129805 ggggtcgctgctggacctgttcct 129828 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 297 gctgctgcgggaggtggcggacgagcacaagacggtgatcatgacgtcggtgaacgaggc 356 |||||||| ||||||||| ||| |||||||||||||||| |||||||||||||| || Sbjct: 142721 gctgctgccggaggtggccatggaggacaagacggtgatcatcacgtcggtgaacgacgc 142780 Query: 357 gtgggcggcggagggctcgctgctggacctcttcc 391 |||||||||| |||||| || || |||||||||| Sbjct: 142781 gtgggcggcgccgggctccctcctcgacctcttcc 142815 Score = 83.8 bits (42), Expect = 4e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 327 gacggtgatcatgacgtcggtgaacgaggcgtgggcggcggagggctcgctgctggac 384 |||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||| Sbjct: 151826 gacggtgatcatgacgtcggtgaacgaggcgtgggcggcgccggggtcgctgatggac 151883 Score = 71.9 bits (36), Expect = 1e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 327 gacggtgatcatgacgtcggtgaacgaggcgtgggcggcg 366 |||||||||||| ||||||||||||||||||||||||||| Sbjct: 148337 gacggtgatcatcacgtcggtgaacgaggcgtgggcggcg 148376 Score = 56.0 bits (28), Expect = 9e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 327 gacggtgatcatgacgtcggtgaacgaggcgt 358 |||||||||||| ||||||||||||||||||| Sbjct: 138934 gacggtgatcatcacgtcggtgaacgaggcgt 138965 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 49 aaccagctggtgtcgctcctcctcgggg 76 ||||||||||||||| | |||||||||| Sbjct: 129376 aaccagctggtgtcgtttctcctcgggg 129403
>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1793G04 Length = 156714 Score = 95.6 bits (48), Expect = 1e-16 Identities = 75/84 (89%) Strand = Plus / Plus Query: 309 ggtggcggacgagcacaagacggtgatcatgacgtcggtgaacgaggcgtgggcggcgga 368 |||||| ||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct: 52439 ggtggccgacgagcacaagaacatcatcatgacgtcggtgaacgaggcgtgggcggcgcc 52498 Query: 369 gggctcgctgctggacctcttcct 392 ||| |||||||||||||| ||||| Sbjct: 52499 ggggtcgctgctggacctgttcct 52522 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 297 gctgctgcgggaggtggcggacgagcacaagacggtgatcatgacgtcggtgaacgaggc 356 |||||||| ||||||||| ||| |||||||||||||||| |||||||||||||| || Sbjct: 65415 gctgctgccggaggtggccatggaggacaagacggtgatcatcacgtcggtgaacgacgc 65474 Query: 357 gtgggcggcggagggctcgctgctggacctcttcc 391 |||||||||| |||||| || || |||||||||| Sbjct: 65475 gtgggcggcgccgggctccctcctcgacctcttcc 65509 Score = 83.8 bits (42), Expect = 4e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 327 gacggtgatcatgacgtcggtgaacgaggcgtgggcggcggagggctcgctgctggac 384 |||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||| Sbjct: 74520 gacggtgatcatgacgtcggtgaacgaggcgtgggcggcgccggggtcgctgatggac 74577 Score = 71.9 bits (36), Expect = 1e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 327 gacggtgatcatgacgtcggtgaacgaggcgtgggcggcg 366 |||||||||||| ||||||||||||||||||||||||||| Sbjct: 71031 gacggtgatcatcacgtcggtgaacgaggcgtgggcggcg 71070 Score = 56.0 bits (28), Expect = 9e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 327 gacggtgatcatgacgtcggtgaacgaggcgt 358 |||||||||||| ||||||||||||||||||| Sbjct: 61628 gacggtgatcatcacgtcggtgaacgaggcgt 61659 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 49 aaccagctggtgtcgctcctcctcgggg 76 ||||||||||||||| | |||||||||| Sbjct: 52070 aaccagctggtgtcgtttctcctcgggg 52097
>ref|XM_463633.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 696 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 297 gctgctgcgggaggtggcggacgagcacaagacggtgatcatgacgtcggtgaacgaggc 356 |||||||| ||||||||| ||| |||||||||||||||| |||||||||||||| || Sbjct: 243 gctgctgccggaggtggccatggaggacaagacggtgatcatcacgtcggtgaacgacgc 302 Query: 357 gtgggcggcggagggctcgctgctggacctcttcc 391 |||||||||| |||||| || || |||||||||| Sbjct: 303 gtgggcggcgccgggctccctcctcgacctcttcc 337
>ref|XM_463636.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1152 Score = 83.8 bits (42), Expect = 4e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 327 gacggtgatcatgacgtcggtgaacgaggcgtgggcggcggagggctcgctgctggac 384 |||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||| Sbjct: 294 gacggtgatcatgacgtcggtgaacgaggcgtgggcggcgccggggtcgctgatggac 351
>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1485_B09 Length = 66599 Score = 83.8 bits (42), Expect = 4e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 327 gacggtgatcatgacgtcggtgaacgaggcgtgggcggcggagggctcgctgctggac 384 |||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||| Sbjct: 7694 gacggtgatcatgacgtcggtgaacgaggcgtgggcggcgccggggtcgctgatggac 7751 Score = 71.9 bits (36), Expect = 1e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 327 gacggtgatcatgacgtcggtgaacgaggcgtgggcggcg 366 |||||||||||| ||||||||||||||||||||||||||| Sbjct: 4205 gacggtgatcatcacgtcggtgaacgaggcgtgggcggcg 4244
>dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1425D05, complete sequence Length = 66450 Score = 83.8 bits (42), Expect = 4e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 327 gacggtgatcatgacgtcggtgaacgaggcgtgggcggcggagggctcgctgctggac 384 |||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||| Sbjct: 92 gacggtgatcatgacgtcggtgaacgaggcgtgggcggcgccggggtcgctgatggac 149
>ref|XM_463635.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1119 Score = 71.9 bits (36), Expect = 1e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 327 gacggtgatcatgacgtcggtgaacgaggcgtgggcggcg 366 |||||||||||| ||||||||||||||||||||||||||| Sbjct: 294 gacggtgatcatcacgtcggtgaacgaggcgtgggcggcg 333
>dbj|AK071688.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113H16, full insert sequence Length = 1334 Score = 71.9 bits (36), Expect = 1e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 327 gacggtgatcatgacgtcggtgaacgaggcgtgggcggcg 366 |||||||||||| ||||||||||||||||||||||||||| Sbjct: 322 gacggtgatcatcacgtcggtgaacgaggcgtgggcggcg 361
>ref|XM_483471.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1008 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 327 gacggtgatcatgacgtcggtgaacgaggcgtgggcggcggagggctcgctgctggacct 386 ||||||||||||||||||| | ||| ||||| |||||| ||| |||||||||||||| Sbjct: 204 gacggtgatcatgacgtcgatcaaccgggcgtacgcggcgccggggtcgctgctggacct 263 Query: 387 cttcct 392 |||||| Sbjct: 264 cttcct 269
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 327 gacggtgatcatgacgtcggtgaacgaggcgtgggcggcggagggctcgctgctggacct 386 ||||||||||||||||||| | ||| ||||| |||||| ||| |||||||||||||| Sbjct: 26392312 gacggtgatcatgacgtcgatcaaccgggcgtacgcggcgccggggtcgctgctggacct 26392371 Query: 387 cttcct 392 |||||| Sbjct: 26392372 cttcct 26392377
>dbj|AP003920.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1789_C07 Length = 138944 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 327 gacggtgatcatgacgtcggtgaacgaggcgtgggcggcggagggctcgctgctggacct 386 ||||||||||||||||||| | ||| ||||| |||||| ||| |||||||||||||| Sbjct: 41864 gacggtgatcatgacgtcgatcaaccgggcgtacgcggcgccggggtcgctgctggacct 41923 Query: 387 cttcct 392 |||||| Sbjct: 41924 cttcct 41929
>dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1770_H02 Length = 170648 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 327 gacggtgatcatgacgtcggtgaacgaggcgtgggcggcggagggctcgctgctggacct 386 ||||||||||||||||||| | ||| ||||| |||||| ||| |||||||||||||| Sbjct: 121893 gacggtgatcatgacgtcgatcaaccgggcgtacgcggcgccggggtcgctgctggacct 121952 Query: 387 cttcct 392 |||||| Sbjct: 121953 cttcct 121958
>ref|XM_463632.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1110 Score = 56.0 bits (28), Expect = 9e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 327 gacggtgatcatgacgtcggtgaacgaggcgt 358 |||||||||||| ||||||||||||||||||| Sbjct: 270 gacggtgatcatcacgtcggtgaacgaggcgt 301
>ref|NM_188795.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1571 Score = 46.1 bits (23), Expect = 0.085 Identities = 38/43 (88%) Strand = Plus / Plus Query: 323 acaagacggtgatcatgacgtcggtgaacgaggcgtgggcggc 365 ||||||||||| | |||||| || | ||||||||||||||||| Sbjct: 489 acaagacggtgctgatgacggcgatcaacgaggcgtgggcggc 531
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.085 Identities = 38/43 (88%) Strand = Plus / Plus Query: 323 acaagacggtgatcatgacgtcggtgaacgaggcgtgggcggc 365 ||||||||||| | |||||| || | ||||||||||||||||| Sbjct: 11535252 acaagacggtgctgatgacggcgatcaacgaggcgtgggcggc 11535294 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 300 gctgcgggaggtggcggacgagcac 324 ||||||| ||||||||||||||||| Sbjct: 25622059 gctgcggcaggtggcggacgagcac 25622083
>dbj|AP005830.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1120F06 Length = 186712 Score = 46.1 bits (23), Expect = 0.085 Identities = 38/43 (88%) Strand = Plus / Plus Query: 323 acaagacggtgatcatgacgtcggtgaacgaggcgtgggcggc 365 ||||||||||| | |||||| || | ||||||||||||||||| Sbjct: 98910 acaagacggtgctgatgacggcgatcaacgaggcgtgggcggc 98952
>dbj|AP005258.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446G09 Length = 146898 Score = 46.1 bits (23), Expect = 0.085 Identities = 38/43 (88%) Strand = Plus / Plus Query: 323 acaagacggtgatcatgacgtcggtgaacgaggcgtgggcggc 365 ||||||||||| | |||||| || | ||||||||||||||||| Sbjct: 144772 acaagacggtgctgatgacggcgatcaacgaggcgtgggcggc 144814
>dbj|AK065831.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037A06, full insert sequence Length = 1571 Score = 46.1 bits (23), Expect = 0.085 Identities = 38/43 (88%) Strand = Plus / Plus Query: 323 acaagacggtgatcatgacgtcggtgaacgaggcgtgggcggc 365 ||||||||||| | |||||| || | ||||||||||||||||| Sbjct: 489 acaagacggtgctgatgacggcgatcaacgaggcgtgggcggc 531
>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 Length = 1779707 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 245 cccaggaggcctgccacaacgc 266 |||||||||||||||||||||| Sbjct: 246367 cccaggaggcctgccacaacgc 246346
>ref|XM_520256.1| PREDICTED: Pan troglodytes similar to RAB9P40 protein (LOC464732), mRNA Length = 705 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 291 gcagcggctgctgcgggaggt 311 ||||||||||||||||||||| Sbjct: 60 gcagcggctgctgcgggaggt 80
>ref|XM_424682.1| PREDICTED: Gallus gallus similar to AIEBP (LOC427088), mRNA Length = 2058 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 297 gctgctgcgggaggtggcgga 317 ||||||||||||||||||||| Sbjct: 1083 gctgctgcgggaggtggcgga 1103
>ref|NM_015844.1| Homo sapiens methyl-CpG binding domain protein 1 (MBD1), transcript variant 3, mRNA Length = 2793 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 280 gaggacgagctgcagcggctgctgc 304 ||||||||||| ||||||||||||| Sbjct: 1106 gaggacgagctacagcggctgctgc 1130
>gb|AF453501.1| Actinosynnema pretiosum subsp. auranticum maytansinoid antitumor agent ansamitocin biosynthetic gene cluster I, partial sequence Length = 82746 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 291 gcagcggctgctgcgggaggtggcg 315 |||||||||||||| |||||||||| Sbjct: 27892 gcagcggctgctgctggaggtggcg 27868
>gb|AC091062.5| Homo sapiens chromosome 17, clone RP11-506D12, complete sequence Length = 81278 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 270 ccaggcggcggaggacgagctgcagcggc 298 ||||||||||||||| | ||||||||||| Sbjct: 34707 ccaggcggcggaggaggggctgcagcggc 34735
>dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0594D10 Length = 143200 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 300 gctgcgggaggtggcggacgagcac 324 ||||||| ||||||||||||||||| Sbjct: 76032 gctgcggcaggtggcggacgagcac 76056
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 285 cgagctgcagcggctgctgcg 305 ||||||||||||||||||||| Sbjct: 1025442 cgagctgcagcggctgctgcg 1025462
>gb|AF078832.1|AF078832 Homo sapiens methyl-CpG binding protein splice variant 3 (MBD1) mRNA, complete cds Length = 1650 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 280 gaggacgagctgcagcggctgctgc 304 ||||||||||| ||||||||||||| Sbjct: 967 gaggacgagctacagcggctgctgc 991
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 285 cgagctgcagcggctgctgcgggag 309 ||||||| ||||||||||||||||| Sbjct: 2578022 cgagctggagcggctgctgcgggag 2577998 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 agcggctgctgcgggaggtggcgg 316 |||||||||||||||||| ||||| Sbjct: 2973017 agcggctgctgcgggaggaggcgg 2972994
>ref|XM_523100.1| PREDICTED: Pan troglodytes similar to Kelch-like protein 1 (LOC467706), mRNA Length = 1257 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 ggcggcggaggacgagctgc 292 |||||||||||||||||||| Sbjct: 216 ggcggcggaggacgagctgc 235
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 ggacgagctgcagcggctgctgcg 305 |||||| ||||||||||||||||| Sbjct: 464660 ggacgacctgcagcggctgctgcg 464683
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 ggacgagctgcagcggctgctgcg 305 |||||| ||||||||||||||||| Sbjct: 3310607 ggacgacctgcagcggctgctgcg 3310630
>gb|AY394005.1| Bacteriophage D3112, complete genome Length = 37611 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 caacgccagccaggcggcgg 280 |||||||||||||||||||| Sbjct: 21801 caacgccagccaggcggcgg 21820
>ref|XM_534089.2| PREDICTED: Canis familiaris similar to HMT1 hnRNP methyltransferase-like 3, transcript variant 1 (LOC476887), mRNA Length = 1864 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 ggcggcggaggacgagctgc 292 |||||||||||||||||||| Sbjct: 159 ggcggcggaggacgagctgc 178
>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome Length = 135301 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 gcggtgccggttgcttctgc 194 |||||||||||||||||||| Sbjct: 123708 gcggtgccggttgcttctgc 123689
>emb|AL603783.14| Human DNA sequence from clone RP11-216B13 on chromosome 6 Contains two CpG islands, complete sequence Length = 94482 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 caggaggctaaccacacaag 215 |||||||||||||||||||| Sbjct: 3118 caggaggctaaccacacaag 3099
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 acgccagccaggcggcggag 282 |||||||||||||||||||| Sbjct: 2163572 acgccagccaggcggcggag 2163553
>emb|Z23068.1|BHV12US Bovine herpesvirus type 1 subtype 2 short unique region DNA Length = 10066 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 gcggtgccggttgcttctgc 194 |||||||||||||||||||| Sbjct: 9640 gcggtgccggttgcttctgc 9621
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 ggacgagctgcagcggctgctgcg 305 |||||| ||||||||||||||||| Sbjct: 3041891 ggacgacctgcagcggctgctgcg 3041914
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 cgagctgcagcggctgctgc 304 |||||||||||||||||||| Sbjct: 87359 cgagctgcagcggctgctgc 87378
>ref|XM_940495.1| PREDICTED: Homo sapiens similar to Kelch domain containing protein 5 (LOC651356), mRNA Length = 1377 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 ggcggcggaggacgagctgc 292 |||||||||||||||||||| Sbjct: 216 ggcggcggaggacgagctgc 235
>ref|XM_372573.1| PREDICTED: Homo sapiens similar to Kelch domain containing protein 5 (LOC390594), mRNA Length = 1377 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 ggcggcggaggacgagctgc 292 |||||||||||||||||||| Sbjct: 216 ggcggcggaggacgagctgc 235
>gb|AC013553.14| Homo sapiens chromosome 15, clone RP11-325L12, complete sequence Length = 184864 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 ggcggcggaggacgagctgc 292 |||||||||||||||||||| Sbjct: 86166 ggcggcggaggacgagctgc 86185
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 gagctgcagcggctgctgcgggag 309 ||||||| |||||||||||||||| Sbjct: 120470 gagctgctgcggctgctgcgggag 120493
>ref|NM_209118.1| Eremothecium gossypii ADL331Cp (ADL331C), mRNA Length = 1251 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 gagctgcagcggctgctgcgggag 309 ||||||| |||||||||||||||| Sbjct: 774 gagctgctgcggctgctgcgggag 751
>dbj|AB075037.1| Rhodococcus erythropolis pDR51-orf4, pDR51-orf1, pDR51-orf2, pDR51-orf3 genes, partial and complete cds Length = 3871 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 cgagctgcagcggctgctgc 304 |||||||||||||||||||| Sbjct: 2810 cgagctgcagcggctgctgc 2791
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 aggacgagctgcagcggctg 300 |||||||||||||||||||| Sbjct: 2688850 aggacgagctgcagcggctg 2688869
>gb|AC174052.1| Homo sapiens chromosome 6 clone WI2-828O19, complete sequence Length = 40298 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 caggaggctaaccacacaag 215 |||||||||||||||||||| Sbjct: 38670 caggaggctaaccacacaag 38651
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 cgagctgcagcggctgctgc 304 |||||||||||||||||||| Sbjct: 1686388 cgagctgcagcggctgctgc 1686407 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,780,148 Number of Sequences: 3902068 Number of extensions: 2780148 Number of successful extensions: 65454 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64750 Number of HSP's gapped (non-prelim): 704 length of query: 392 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 370 effective length of database: 17,147,199,772 effective search space: 6344463915640 effective search space used: 6344463915640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
