ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet46c01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065295.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N13, full insert sequence Length = 1983 Score = 256 bits (129), Expect = 5e-65 Identities = 216/245 (88%) Strand = Plus / Plus Query: 150 cgccgggcggtcgccgccatggtcgcggccccggccaaggtcggcgccgccatgccctcg 209 ||||| |||||| |||||||||||||||| ||| | ||||| ||||||||||| ||| Sbjct: 207 cgccgcgcggtcaccgccatggtcgcggcgccgccggccgtcggggccgccatgccgtcg 266 Query: 210 ctcgacttcgacaccgccgtcttcaacaaggagaaggtctccctcgccggccacgaggag 269 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 267 ctcgacttcgacacatccgtcttcaacaaggagaaggtctccctcgccggccacgaggag 326 Query: 270 tacatcgtcaggggcgggcggaacctcttcccgctgctcccggaggccttcaagggcgtc 329 || ||||| ||||| ||| ||||||| ||||||||||| || ||||| ||||||||| || Sbjct: 327 tatatcgtgaggggtgggaggaacctgttcccgctgcttcccgaggcgttcaagggcatc 386 Query: 330 aagcagatcggggtcatcggatggggctcacagggtccggcgcaggcccagaacctgagg 389 ||||||||||| || || ||||||||||| ||||| || || || ||||||||||||||| Sbjct: 387 aagcagatcggagtgattggatggggctctcaggggcctgcacaagcccagaacctgagg 446 Query: 390 gattc 394 ||||| Sbjct: 447 gattc 451
>gb|BT016666.1| Zea mays clone Contig499 mRNA sequence Length = 1992 Score = 254 bits (128), Expect = 2e-64 Identities = 218/248 (87%) Strand = Plus / Plus Query: 147 cgccgccgggcggtcgccgccatggtcgcggccccggccaaggtcggcgccgccatgccc 206 |||||||||| ||||||||||||||| | || ||| | |||||| |||||||||| Sbjct: 179 cgccgccgggacgtcgccgccatggtctccgcgccgccggccgtcggcaccgccatgccg 238 Query: 207 tcgctcgacttcgacaccgccgtcttcaacaaggagaaggtctccctcgccggccacgag 266 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 239 tcgctcgacttcgacacctccgtcttcaacaaggagaaggtctccctcgccggccacgac 298 Query: 267 gagtacatcgtcaggggcgggcggaacctcttcccgctgctcccggaggccttcaagggc 326 ||||||||||| | |||||| ||||||| ||||||||||| ||||||| |||||||| Sbjct: 299 gagtacatcgtgcgcggcgggaggaacctgttcccgctgctttcggaggcgttcaagggg 358 Query: 327 gtcaagcagatcggggtcatcggatggggctcacagggtccggcgcaggcccagaacctg 386 |||||||||||||| ||||| ||||||||||| |||||||| || || |||||||||||| Sbjct: 359 gtcaagcagatcggagtcattggatggggctcgcagggtcctgcccaagcccagaacctg 418 Query: 387 agggattc 394 || ||||| Sbjct: 419 agagattc 426
>gb|AY103782.1| Zea mays PCO080860 mRNA sequence Length = 2117 Score = 250 bits (126), Expect = 3e-63 Identities = 231/266 (86%) Strand = Plus / Plus Query: 147 cgccgccgggcggtcgccgccatggtcgcggccccggccaaggtcggcgccgccatgccc 206 |||||||||| ||||||||||||||| | || ||| | |||||| |||||||||| Sbjct: 271 cgccgccgggacgtcgccgccatggtctccgcgccgccggccgtcggcaccgccatgccg 330 Query: 207 tcgctcgacttcgacaccgccgtcttcaacaaggagaaggtctccctcgccggccacgag 266 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 331 tcgctcgacttcgacacctccgtcttcaacaaggagaaggtctccctcgccggccacgac 390 Query: 267 gagtacatcgtcaggggcgggcggaacctcttcccgctgctcccggaggccttcaagggc 326 ||||||||||| | |||||| ||||||| ||||||||||| ||||||| |||||||| Sbjct: 391 gagtacatcgtgcgcggcgggaggaacctgttcccgctgctttcggaggcgttcaagggg 450 Query: 327 gtcaagcagatcggggtcatcggatggggctcacagggtccggcgcaggcccagaacctg 386 |||||||||||||| || || ||||||||||| |||||||| || || |||||||||||| Sbjct: 451 gtcaagcagatcggagttattggatggggctcgcagggtcctgcccaagcccagaacctg 510 Query: 387 agggattccttggtggaagccaagtc 412 || ||||| ||| ||||||||||| Sbjct: 511 agagattcactggctgaagccaagtc 536
>gb|BT009123.1| Triticum aestivum clone wl1n.pk0013.e12:fis, full insert mRNA sequence Length = 1957 Score = 157 bits (79), Expect = 4e-35 Identities = 169/199 (84%) Strand = Plus / Plus Query: 190 tcggcgccgccatgccctcgctcgacttcgacaccgccgtcttcaacaaggagaaggtct 249 ||||| |||||||||| |||||||||||||| ||| |||||||||| ||||| ||||| | Sbjct: 217 tcggcaccgccatgccgtcgctcgacttcgagacctccgtcttcaagaaggaaaaggtgt 276 Query: 250 ccctcgccggccacgaggagtacatcgtcaggggcgggcggaacctcttcccgctgctcc 309 |||| |||||||| |||||||| || || ||||| ||| || | || ||||||||| | | Sbjct: 277 ccctggccggccatgaggagtatattgtgaggggtgggagggatctgttcccgctgttac 336 Query: 310 cggaggccttcaagggcgtcaagcagatcggggtcatcggatggggctcacagggtccgg 369 |||||||||||||||| |||| |||||||| || ||||| |||||||| |||||||| | Sbjct: 337 cggaggccttcaagggaatcaaacagatcggtgtaatcggctggggctcgcagggtcctg 396 Query: 370 cgcaggcccagaacctgag 388 |||| || |||||| |||| Sbjct: 397 cgcaagctcagaacttgag 415
>gb|AY103707.1| Zea mays PCO072121 mRNA sequence Length = 1985 Score = 157 bits (79), Expect = 4e-35 Identities = 169/199 (84%) Strand = Plus / Plus Query: 190 tcggcgccgccatgccctcgctcgacttcgacaccgccgtcttcaacaaggagaaggtct 249 ||||| |||||||||| |||||||||||||| ||| |||||||||| ||||| ||||| | Sbjct: 228 tcggcaccgccatgccgtcgctcgacttcgagacctccgtcttcaagaaggaaaaggtgt 287 Query: 250 ccctcgccggccacgaggagtacatcgtcaggggcgggcggaacctcttcccgctgctcc 309 |||| |||||||| |||||||| || || ||||| ||| || | || ||||||||| | | Sbjct: 288 ccctggccggccatgaggagtatattgtgaggggtgggagggatctgttcccgctgttac 347 Query: 310 cggaggccttcaagggcgtcaagcagatcggggtcatcggatggggctcacagggtccgg 369 |||||||||||||||| |||| |||||||| || ||||| |||||||| |||||||| | Sbjct: 348 cggaggccttcaagggaatcaaacagatcggtgtaatcggctggggctcgcagggtcctg 407 Query: 370 cgcaggcccagaacctgag 388 |||| || |||||| |||| Sbjct: 408 cgcaagctcagaacttgag 426
>ref|NM_192395.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1746 Score = 147 bits (74), Expect = 3e-32 Identities = 170/202 (84%) Strand = Plus / Plus Query: 190 tcggcgccgccatgccctcgctcgacttcgacaccgccgtcttcaacaaggagaaggtct 249 |||| ||| ||||||| ||||| |||||||| || |||||||||| ||||||||||| | Sbjct: 191 tcggggccaccatgccgtcgctggacttcgagacatccgtcttcaagaaggagaaggtgt 250 Query: 250 ccctcgccggccacgaggagtacatcgtcaggggcgggcggaacctcttcccgctgctcc 309 | || || ||||| || ||||| || || ||||||||| |||| || ||||||||||| | Sbjct: 251 ctctagctggccatgacgagtatattgtgaggggcgggaggaatctgttcccgctgctgc 310 Query: 310 cggaggccttcaagggcgtcaagcagatcggggtcatcggatggggctcacagggtccgg 369 ||||||| |||||||| ||||||||||||| || ||||||||||| || |||||||| | Sbjct: 311 cggaggcgttcaaggggatcaagcagatcggcgtaatcggatggggttctcagggtcctg 370 Query: 370 cgcaggcccagaacctgaggga 391 | || || |||||||||||||| Sbjct: 371 cacaagctcagaacctgaggga 392
>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10, complete sequence Length = 187034 Score = 143 bits (72), Expect = 5e-31 Identities = 108/120 (90%) Strand = Plus / Minus Query: 150 cgccgggcggtcgccgccatggtcgcggccccggccaaggtcggcgccgccatgccctcg 209 ||||| |||||| |||||||||||||||| ||| | ||||| ||||||||||| ||| Sbjct: 146326 cgccgcgcggtcaccgccatggtcgcggcgccgccggccgtcggggccgccatgccgtcg 146267 Query: 210 ctcgacttcgacaccgccgtcttcaacaaggagaaggtctccctcgccggccacgaggag 269 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146266 ctcgacttcgacacatccgtcttcaacaaggagaaggtctccctcgccggccacgaggag 146207 Score = 87.7 bits (44), Expect = 3e-14 Identities = 83/96 (86%) Strand = Plus / Minus Query: 268 agtacatcgtcaggggcgggcggaacctcttcccgctgctcccggaggccttcaagggcg 327 |||| ||||| ||||| ||| ||||||| ||||||||||| || ||||| ||||||||| Sbjct: 146106 agtatatcgtgaggggtgggaggaacctgttcccgctgcttcccgaggcgttcaagggca 146047 Query: 328 tcaagcagatcggggtcatcggatggggctcacagg 363 ||||||||||||| || || ||||||||||| |||| Sbjct: 146046 tcaagcagatcggagtgattggatggggctctcagg 146011 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gcccagaacctgagggattc 394 |||||||||||||||||||| Sbjct: 145728 gcccagaacctgagggattc 145709
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 143 bits (72), Expect = 5e-31 Identities = 108/120 (90%) Strand = Plus / Minus Query: 150 cgccgggcggtcgccgccatggtcgcggccccggccaaggtcggcgccgccatgccctcg 209 ||||| |||||| |||||||||||||||| ||| | ||||| ||||||||||| ||| Sbjct: 28362084 cgccgcgcggtcaccgccatggtcgcggcgccgccggccgtcggggccgccatgccgtcg 28362025 Query: 210 ctcgacttcgacaccgccgtcttcaacaaggagaaggtctccctcgccggccacgaggag 269 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28362024 ctcgacttcgacacatccgtcttcaacaaggagaaggtctccctcgccggccacgaggag 28361965 Score = 87.7 bits (44), Expect = 3e-14 Identities = 83/96 (86%) Strand = Plus / Minus Query: 268 agtacatcgtcaggggcgggcggaacctcttcccgctgctcccggaggccttcaagggcg 327 |||| ||||| ||||| ||| ||||||| ||||||||||| || ||||| ||||||||| Sbjct: 28361864 agtatatcgtgaggggtgggaggaacctgttcccgctgcttcccgaggcgttcaagggca 28361805 Query: 328 tcaagcagatcggggtcatcggatggggctcacagg 363 ||||||||||||| || || ||||||||||| |||| Sbjct: 28361804 tcaagcagatcggagtgattggatggggctctcagg 28361769 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gcccagaacctgagggattc 394 |||||||||||||||||||| Sbjct: 28361486 gcccagaacctgagggattc 28361467
>dbj|AK072075.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013115K02, full insert sequence Length = 1917 Score = 139 bits (70), Expect = 8e-30 Identities = 160/190 (84%) Strand = Plus / Plus Query: 202 tgccctcgctcgacttcgacaccgccgtcttcaacaaggagaaggtctccctcgccggcc 261 |||| ||||| |||||||| || |||||||||| ||||||||||| || || || |||| Sbjct: 154 tgccgtcgctggacttcgagacatccgtcttcaagaaggagaaggtgtctctagctggcc 213 Query: 262 acgaggagtacatcgtcaggggcgggcggaacctcttcccgctgctcccggaggccttca 321 | || ||||| || || ||||||||| |||| || ||||||||||| |||||||| |||| Sbjct: 214 atgacgagtatattgtgaggggcgggaggaatctgttcccgctgctgccggaggcgttca 273 Query: 322 agggcgtcaagcagatcggggtcatcggatggggctcacagggtccggcgcaggcccaga 381 |||| ||||||||||||| || ||||||||||| || |||||||| || || || |||| Sbjct: 274 aggggatcaagcagatcggcgtaatcggatggggttctcagggtcctgcacaagctcaga 333 Query: 382 acctgaggga 391 |||||||||| Sbjct: 334 acctgaggga 343
>emb|AJ234546.1|HVU234546 Hordeum vulgare genomic DNA fragment; clone MWG0632 Length = 703 Score = 131 bits (66), Expect = 2e-27 Identities = 66/66 (100%) Strand = Plus / Minus Query: 360 cagggtccggcgcaggcccagaacctgagggattccttggtggaagccaagtctgacatc 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 660 cagggtccggcgcaggcccagaacctgagggattccttggtggaagccaagtctgacatc 601 Query: 420 gtcgtc 425 |||||| Sbjct: 600 gtcgtc 595
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 93.7 bits (47), Expect = 4e-16 Identities = 71/79 (89%) Strand = Plus / Plus Query: 191 cggcgccgccatgccctcgctcgacttcgacaccgccgtcttcaacaaggagaaggtctc 250 ||||||||||||| | |||||||||||||| || | ||||||||||||||||||||| Sbjct: 5416315 cggcgccgccatgacgtcgctcgacttcgagacatctatcttcaacaaggagaaggtctt 5416374 Query: 251 cctcgccggccacgaggag 269 ||||||||||||||||||| Sbjct: 5416375 cctcgccggccacgaggag 5416393 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Plus Query: 279 aggggcgggcggaacctcttcccgctgctcccggaggccttcaagggcgtcaagcagatc 338 ||||||||| |||| || ||||||||||| |||||||| |||||||| ||||||||||| Sbjct: 26385851 aggggcgggaggaatctgttcccgctgctgccggaggcgttcaaggggatcaagcagatc 26385910 Query: 339 ggggtcatcggatgggg 355 || || ||||||||||| Sbjct: 26385911 ggcgtaatcggatgggg 26385927 Score = 52.0 bits (26), Expect = 0.001 Identities = 50/58 (86%) Strand = Plus / Plus Query: 190 tcggcgccgccatgccctcgctcgacttcgacaccgccgtcttcaacaaggagaaggt 247 |||| ||| ||||||| ||||| |||||||| || |||||||||| ||||||||||| Sbjct: 26385661 tcggggccaccatgccgtcgctggacttcgagacatccgtcttcaagaaggagaaggt 26385718 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 gcccagaacctgagggattc 394 |||||||||||||||||||| Sbjct: 5416851 gcccagaacctgagggattc 5416870
>dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1015E06 Length = 164583 Score = 93.7 bits (47), Expect = 4e-16 Identities = 71/79 (89%) Strand = Plus / Plus Query: 191 cggcgccgccatgccctcgctcgacttcgacaccgccgtcttcaacaaggagaaggtctc 250 ||||||||||||| | |||||||||||||| || | ||||||||||||||||||||| Sbjct: 13155 cggcgccgccatgacgtcgctcgacttcgagacatctatcttcaacaaggagaaggtctt 13214 Query: 251 cctcgccggccacgaggag 269 ||||||||||||||||||| Sbjct: 13215 cctcgccggccacgaggag 13233 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 gcccagaacctgagggattc 394 |||||||||||||||||||| Sbjct: 13691 gcccagaacctgagggattc 13710
>ref|NM_196741.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0094K20.16), mRNA Length = 294 Score = 89.7 bits (45), Expect = 7e-15 Identities = 90/105 (85%) Strand = Plus / Plus Query: 290 gaacctcttcccgctgctcccggaggccttcaagggcgtcaagcagatcggggtcatcgg 349 |||||| ||||||||||| || ||||| ||||||||| ||||| ||||| || ||||| Sbjct: 3 gaacctgttcccgctgcttcccgaggcgttcaagggcaataagcaaatcggagtgatcgg 62 Query: 350 atggggctcacagggtccggcgcaggcccagaacctgagggattc 394 ||||||||| ||||| || || || |||||||||||||||||||| Sbjct: 63 atggggctctcaggggcctgcacaagcccagaacctgagggattc 107
>dbj|AK120099.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022F17, full insert sequence Length = 4310 Score = 89.7 bits (45), Expect = 7e-15 Identities = 90/105 (85%) Strand = Plus / Plus Query: 290 gaacctcttcccgctgctcccggaggccttcaagggcgtcaagcagatcggggtcatcgg 349 |||||| ||||||||||| || ||||| ||||||||| ||||| ||||| || ||||| Sbjct: 2715 gaacctgttcccgctgcttcccgaggcgttcaagggcaataagcaaatcggagtgatcgg 2774 Query: 350 atggggctcacagggtccggcgcaggcccagaacctgagggattc 394 ||||||||| ||||| || || || |||||||||||||||||||| Sbjct: 2775 atggggctctcaggggcctgcacaagcccagaacctgagggattc 2819
>dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0032K15 Length = 126195 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Plus Query: 279 aggggcgggcggaacctcttcccgctgctcccggaggccttcaagggcgtcaagcagatc 338 ||||||||| |||| || ||||||||||| |||||||| |||||||| ||||||||||| Sbjct: 59716 aggggcgggaggaatctgttcccgctgctgccggaggcgttcaaggggatcaagcagatc 59775 Query: 339 ggggtcatcggatgggg 355 || || ||||||||||| Sbjct: 59776 ggcgtaatcggatgggg 59792 Score = 52.0 bits (26), Expect = 0.001 Identities = 50/58 (86%) Strand = Plus / Plus Query: 190 tcggcgccgccatgccctcgctcgacttcgacaccgccgtcttcaacaaggagaaggt 247 |||| ||| ||||||| ||||| |||||||| || |||||||||| ||||||||||| Sbjct: 59526 tcggggccaccatgccgtcgctggacttcgagacatccgtcttcaagaaggagaaggt 59583
>dbj|AK100611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107L23, full insert sequence Length = 3082 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 290 gaacctcttcccgctgctcccggaggccttcaagggcgtcaagcagatcggggtcatcgg 349 |||||| ||||||||||| || ||||| ||||||||| ||||| ||||| || ||||| Sbjct: 1083 gaacctgttcccgctgcttcccgaggcgttcaagggcaataagcaaatcggagtgatcgg 1142 Query: 350 atggggctcacaggg 364 ||||||||| ||||| Sbjct: 1143 atggggctctcaggg 1157
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 60.0 bits (30), Expect = 6e-06 Identities = 63/74 (85%) Strand = Plus / Minus Query: 290 gaacctcttcccgctgctcccggaggccttcaagggcgtcaagcagatcggggtcatcgg 349 |||||| ||||||||||| || ||||| ||||||||| ||||| ||||| || ||||| Sbjct: 15649470 gaacctgttcccgctgcttcccgaggcgttcaagggcaataagcaaatcggagtgatcgg 15649411 Query: 350 atggggctcacagg 363 ||||||||| |||| Sbjct: 15649410 atggggctctcagg 15649397 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gcccagaacctgagggattc 394 |||||||||||||||||||| Sbjct: 15649126 gcccagaacctgagggattc 15649107 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 cggcgccgccatgccctcgc 210 |||||||||||||||||||| Sbjct: 14923888 cggcgccgccatgccctcgc 14923907
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 60.0 bits (30), Expect = 6e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 290 gaacctcttcccgctgctcccggaggccttcaagggcgtcaagcagatcggggtcatcgg 349 |||||| ||||||||||| || ||||| ||||||||| ||||| ||||| || ||||| Sbjct: 16009273 gaacctgttcccgctgcttcccgaggcgttcaagggcaataagcaaatcggagtgatcgg 16009332 Query: 350 atggggctcacagg 363 ||||||||| |||| Sbjct: 16009333 atggggctctcagg 16009346
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 60.0 bits (30), Expect = 6e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 290 gaacctcttcccgctgctcccggaggccttcaagggcgtcaagcagatcggggtcatcgg 349 |||||| ||||||||||| || ||||| ||||||||| ||||| ||||| || ||||| Sbjct: 2846549 gaacctgttcccgctgcttcccgaggcgttcaagggcaataagcaaatcggagtgatcgg 2846608 Query: 350 atggggctcacagg 363 ||||||||| |||| Sbjct: 2846609 atggggctctcagg 2846622 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 cttctccccggccgcctcgc 126 |||||||||||||||||||| Sbjct: 28936410 cttctccccggccgcctcgc 28936429
>gb|AC025907.2|AC025907 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0094K20, complete sequence Length = 193119 Score = 60.0 bits (30), Expect = 6e-06 Identities = 63/74 (85%) Strand = Plus / Minus Query: 290 gaacctcttcccgctgctcccggaggccttcaagggcgtcaagcagatcggggtcatcgg 349 |||||| ||||||||||| || ||||| ||||||||| ||||| ||||| || ||||| Sbjct: 136836 gaacctgttcccgctgcttcccgaggcgttcaagggcaataagcaaatcggagtgatcgg 136777 Query: 350 atggggctcacagg 363 ||||||||| |||| Sbjct: 136776 atggggctctcagg 136763 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gcccagaacctgagggattc 394 |||||||||||||||||||| Sbjct: 136492 gcccagaacctgagggattc 136473
>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0050G13 Length = 150685 Score = 60.0 bits (30), Expect = 6e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 290 gaacctcttcccgctgctcccggaggccttcaagggcgtcaagcagatcggggtcatcgg 349 |||||| ||||||||||| || ||||| ||||||||| ||||| ||||| || ||||| Sbjct: 114777 gaacctgttcccgctgcttcccgaggcgttcaagggcaataagcaaatcggagtgatcgg 114836 Query: 350 atggggctcacagg 363 ||||||||| |||| Sbjct: 114837 atggggctctcagg 114850
>dbj|AP005833.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1328_D07 Length = 155007 Score = 60.0 bits (30), Expect = 6e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 290 gaacctcttcccgctgctcccggaggccttcaagggcgtcaagcagatcggggtcatcgg 349 |||||| ||||||||||| || ||||| ||||||||| ||||| ||||| || ||||| Sbjct: 9486 gaacctgttcccgctgcttcccgaggcgttcaagggcaataagcaaatcggagtgatcgg 9545 Query: 350 atggggctcacagg 363 ||||||||| |||| Sbjct: 9546 atggggctctcagg 9559
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 60.0 bits (30), Expect = 6e-06 Identities = 63/74 (85%) Strand = Plus / Minus Query: 290 gaacctcttcccgctgctcccggaggccttcaagggcgtcaagcagatcggggtcatcgg 349 |||||| ||||||||||| || ||||| ||||||||| ||||| ||||| || ||||| Sbjct: 15657711 gaacctgttcccgctgcttcccgaggcgttcaagggcaataagcaaatcggagtgatcgg 15657652 Query: 350 atggggctcacagg 363 ||||||||| |||| Sbjct: 15657651 atggggctctcagg 15657638 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gcccagaacctgagggattc 394 |||||||||||||||||||| Sbjct: 15657367 gcccagaacctgagggattc 15657348 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 cggcgccgccatgccctcgc 210 |||||||||||||||||||| Sbjct: 14932129 cggcgccgccatgccctcgc 14932148
>dbj|AB102895.1| Solanum melongena 1B08 mRNA for hypothetical protein, partial cds Length = 506 Score = 46.1 bits (23), Expect = 0.092 Identities = 56/67 (83%) Strand = Plus / Plus Query: 328 tcaagcagatcggggtcatcggatggggctcacagggtccggcgcaggcccagaacctga 387 ||||||||||||| ||||| || ||||| || ||||| || || || ||||| ||| ||| Sbjct: 58 tcaagcagatcggcgtcattggctggggttctcagggacctgctcaagcccaaaacttga 117 Query: 388 gggattc 394 ||||||| Sbjct: 118 gggattc 124
>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete sequence Length = 1019846 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 311 ggaggccttcaagggcgtcaagcag 335 ||||||||||||||||| ||||||| Sbjct: 324865 ggaggccttcaagggcgacaagcag 324841
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 314 ggccttcaagggcgtcaagca 334 ||||||||||||||||||||| Sbjct: 2999344 ggccttcaagggcgtcaagca 2999324
>ref|XM_567793.1| Cryptococcus neoformans var. neoformans JEC21 phosphogluconate dehydrogenase (decarboxylating) (CNK01050) partial mRNA Length = 1639 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 311 ggaggccttcaagggcgtcaagcag 335 ||||||||||||||||| ||||||| Sbjct: 982 ggaggccttcaagggcgacaagcag 1006
>ref|XM_800183.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053509945.20) partial mRNA Length = 1227 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 150 cgccgggcggtcgccgccatggtcg 174 |||||||||||||||||||| |||| Sbjct: 978 cgccgggcggtcgccgccatcgtcg 1002
>ref|XM_815187.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508277.200) partial mRNA Length = 900 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 150 cgccgggcggtcgccgccatggtcg 174 |||||||||||||||||||| |||| Sbjct: 648 cgccgggcggtcgccgccatcgtcg 672
>emb|BX284613.3| Human DNA sequence from clone RP5-1092L12 on chromosome 1 Contains the 3' end of a novel gene (FLJ23550) and a novel pseudogene, complete sequence Length = 106576 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 84 tcgtccatctcatcctccgtc 104 ||||||||||||||||||||| Sbjct: 36196 tcgtccatctcatcctccgtc 36176
>gb|AC046136.12| Homo sapiens 3 BAC RP11-190P13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 155827 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 tcgtccatctcatcctccgtc 104 ||||||||||||||||||||| Sbjct: 97357 tcgtccatctcatcctccgtc 97377
>gb|AE004649.1| Pseudomonas aeruginosa PAO1, section 210 of 529 of the complete genome Length = 23425 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 179 cccggccaaggtcggcgccgccatg 203 ||||||||||| ||||||||||||| Sbjct: 20575 cccggccaaggccggcgccgccatg 20599
>ref|XM_566400.1| Anopheles gambiae str. PEST ENSANGP00000027690 (ENSANGG00000003703), partial mRNA Length = 2985 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 152 ccgggcggtcgccgccatggtcgcg 176 |||| |||||||||||||||||||| Sbjct: 1242 ccggccggtcgccgccatggtcgcg 1266
>ref|XM_311131.2| Anopheles gambiae str. PEST ENSANGP00000004747 (ENSANGG00000003703), partial mRNA Length = 4140 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 152 ccgggcggtcgccgccatggtcgcg 176 |||| |||||||||||||||||||| Sbjct: 1473 ccggccggtcgccgccatggtcgcg 1497
>ref|XM_467336.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2373 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 cttctccccggccgcctcgc 126 |||||||||||||||||||| Sbjct: 118 cttctccccggccgcctcgc 137
>gb|AE017352.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 12, complete sequence Length = 906719 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tcctcgtccatctcatcctc 100 |||||||||||||||||||| Sbjct: 50033 tcctcgtccatctcatcctc 50052
>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete sequence Length = 1194300 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 tcctcgtccatctcatcctc 100 |||||||||||||||||||| Sbjct: 12959 tcctcgtccatctcatcctc 12940
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete sequence Length = 1783081 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 gccgtcttcaacaaggagaa 244 |||||||||||||||||||| Sbjct: 289930 gccgtcttcaacaaggagaa 289949
>gb|AC150515.3| Bos taurus BAC CH240-118E9 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 171213 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 ccatctcatcctccgtcgccttct 111 ||||||||||||| |||||||||| Sbjct: 117749 ccatctcatcctctgtcgccttct 117772
>gb|AC150860.4| Bos taurus BAC CH240-424I20 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 165874 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 ccatctcatcctccgtcgccttct 111 ||||||||||||| |||||||||| Sbjct: 151024 ccatctcatcctctgtcgccttct 151001
>ref|XM_974977.1| PREDICTED: Mus musculus RIKEN cDNA 1700016L21 gene (1700016L21Rik), mRNA Length = 813 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 tggaagccaagtctgacatc 419 |||||||||||||||||||| Sbjct: 554 tggaagccaagtctgacatc 535
>ref|XM_987528.1| PREDICTED: Mus musculus RIKEN cDNA 1700016L21 gene (1700016L21Rik), mRNA Length = 711 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 tggaagccaagtctgacatc 419 |||||||||||||||||||| Sbjct: 452 tggaagccaagtctgacatc 433
>ref|XM_974436.1| PREDICTED: Mus musculus RIKEN cDNA 1700016L21 gene (1700016L21Rik), mRNA Length = 474 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 tggaagccaagtctgacatc 419 |||||||||||||||||||| Sbjct: 215 tggaagccaagtctgacatc 196
>ref|XM_567944.1| Cryptococcus neoformans var. neoformans JEC21 1-acylglycerol-3-phosphate O-acyltransferase (CNL03840) partial mRNA Length = 1326 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 tcctcgtccatctcatcctc 100 |||||||||||||||||||| Sbjct: 1184 tcctcgtccatctcatcctc 1165
>ref|XM_570402.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CND00940) partial mRNA Length = 2216 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 gccgtcttcaacaaggagaa 244 |||||||||||||||||||| Sbjct: 481 gccgtcttcaacaaggagaa 500
>ref|XM_572543.1| Cryptococcus neoformans var. neoformans JEC21 1-acylglycerol-3-phosphate O-acyltransferase (CNH03840) partial mRNA Length = 1326 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 tcctcgtccatctcatcctc 100 |||||||||||||||||||| Sbjct: 1184 tcctcgtccatctcatcctc 1165
>gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0019M20, complete sequence Length = 139421 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 cggcgccgccatgccctcgc 210 |||||||||||||||||||| Sbjct: 103666 cggcgccgccatgccctcgc 103685
>dbj|AK023792.1| Homo sapiens cDNA FLJ13730 fis, clone PLACE3000136 Length = 5333 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 ctcctcgtccatctcatcctccgt 103 |||||| ||||||||||||||||| Sbjct: 3250 ctcctcttccatctcatcctccgt 3227
>dbj|AK006047.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700016L21 product:unclassifiable, full insert sequence Length = 395 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 tggaagccaagtctgacatc 419 |||||||||||||||||||| Sbjct: 136 tggaagccaagtctgacatc 117
>gb|AF362471.1|AF362471 Triticum aestivum cytokinin dehydrogenase mRNA, partial cds Length = 413 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 212 cgacttcgacaccgccgtcttcaa 235 ||||||||||| |||||||||||| Sbjct: 45 cgacttcgacagcgccgtcttcaa 68
>gb|U57899.1|ZMU57899 Zea mays repressor-like protein (in1) gene, complete cds Length = 8291 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 gccgccgccggaggctcctc 85 |||||||||||||||||||| Sbjct: 7295 gccgccgccggaggctcctc 7276
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 215 cttcgacaccgccgtcttcaacaa 238 |||||||| ||||||||||||||| Sbjct: 7357498 cttcgacatcgccgtcttcaacaa 7357521
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 tcgccgccatggtcgcggcc 179 |||||||||||||||||||| Sbjct: 6808915 tcgccgccatggtcgcggcc 6808896
>dbj|AP004052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1218_D07 Length = 114511 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 cttctccccggccgcctcgc 126 |||||||||||||||||||| Sbjct: 19468 cttctccccggccgcctcgc 19487 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,288,490 Number of Sequences: 3902068 Number of extensions: 2288490 Number of successful extensions: 48859 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48243 Number of HSP's gapped (non-prelim): 611 length of query: 425 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 403 effective length of database: 17,147,199,772 effective search space: 6910321508116 effective search space used: 6910321508116 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
