ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet46a09 |
|---|---|
| Clone Library Name | barley_pub |
>ASA1_ENTFA (P17953) Aggregation substance precursor| Length = 1296 Score = 35.8 bits (81), Expect = 0.058 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = +2 Query: 32 SERDRGIIMAQQSGNDLKTVMEKLLQAFEDEVDT-ELPQREKLDHIFRILKANKEKIISE 208 +++D I + ++ DL V K L A E EVD + Q +K+ LKA EKI E Sbjct: 174 AKKDPNITVVEKPAEDLGNVSSKDLAAKEKEVDQLQKEQAKKIAQQAAELKAKNEKIAKE 233 Query: 209 PPEVGKKEK 235 E+ K K Sbjct: 234 NAEIAAKNK 242
>KIF1A_HUMAN (Q12756) Kinesin-like protein KIF1A (Axonal transporter of synaptic| vesicles) Length = 1690 Score = 33.1 bits (74), Expect = 0.37 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Frame = +2 Query: 56 MAQQSGNDLKTVMEKLLQAFED------EVDTELPQREKLDHIFRILKANKEKIISEPPE 217 + ++ G D+K ME+ LQ ED E T L ++++LD+ ++ K+ PE Sbjct: 626 LLEKQGIDMKQEMEQRLQELEDQYRREREEATYLLEQQRLDYESKLEALQKQMDSRYYPE 685 Query: 218 VGKKEKLPE 244 V ++E+ PE Sbjct: 686 VNEEEEEPE 694
>KIF1A_MOUSE (P33173) Kinesin-like protein KIF1A (Axonal transporter of synaptic| vesicles) Length = 1695 Score = 33.1 bits (74), Expect = 0.37 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Frame = +2 Query: 56 MAQQSGNDLKTVMEKLLQAFED------EVDTELPQREKLDHIFRILKANKEKIISEPPE 217 + ++ G D+K ME+ LQ ED E T L ++++LD+ ++ K+ PE Sbjct: 626 LLEKQGIDMKQEMEQRLQELEDQYRREREEATYLLEQQRLDYESKLEALQKQMDSRYYPE 685 Query: 218 VGKKEKLPE 244 V ++E+ PE Sbjct: 686 VNEEEEEPE 694
>FTSK_CLOAB (Q97I41) DNA translocase ftsK| Length = 765 Score = 31.2 bits (69), Expect = 1.4 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Frame = -2 Query: 199 DLLLVCLEDAEDVVQLLP--LRQLGVHFVLERLEQLLHYSLEIIAALLRHDYPS-ISLTV 29 DL++VC D ED + L R G+H V+ S+++I +++ + PS IS V Sbjct: 564 DLMMVCPNDVEDYIGRLAQMARAAGMHLVIATQRP----SVDVITGVIKANIPSRISFAV 619 Query: 28 STLASNREL 2 S+ +R + Sbjct: 620 SSQIDSRTI 628
>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)| Length = 1262 Score = 30.8 bits (68), Expect = 1.9 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +1 Query: 106 PGVRGRSGHRAASKGEAGPHLPHPQGKQG 192 PG+RG +G A+ + GP P P G QG Sbjct: 829 PGLRGEAGPPGAAGPQGGPGAPGPPGPQG 857
>FTSK_CLOTE (Q895I8) DNA translocase ftsK| Length = 743 Score = 30.8 bits (68), Expect = 1.9 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Frame = -2 Query: 199 DLLLVCLEDAEDVVQLLP--LRQLGVHFVLERLEQLLHYSLEIIAALLRHDYPS-ISLTV 29 DL++VC D ED + L R G+H V+ S+++I +++ + PS IS V Sbjct: 540 DLMMVCPNDIEDYIGRLAQMARAAGMHLVIATQRP----SVDVITGVIKANIPSRISFAV 595 Query: 28 STLASNREL 2 S+ +R + Sbjct: 596 SSQIDSRTI 604
>KARG_LIMPO (P51541) Arginine kinase (EC 2.7.3.3) (AK)| Length = 357 Score = 30.4 bits (67), Expect = 2.4 Identities = 15/37 (40%), Positives = 25/37 (67%) Frame = +2 Query: 32 SERDRGIIMAQQSGNDLKTVMEKLLQAFEDEVDTELP 142 +E D I++ Q G DLKTV ++L+ A D ++++LP Sbjct: 223 NEEDHLRIISMQKGGDLKTVYKRLVTAV-DNIESKLP 258
>NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)| (214 kDa nucleoporin) (CAN protein) Length = 2090 Score = 30.4 bits (67), Expect = 2.4 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = +2 Query: 119 DEVDTELPQREKLDHIFRILKANKEKIISEPPEVGKK 229 DE+D +P+RE D FR LK K +I P E+ K+ Sbjct: 3 DEMDAMIPEREMKDFQFRALK--KVRIFDSPEELPKE 37
>COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor| Length = 1804 Score = 30.0 bits (66), Expect = 3.2 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = +1 Query: 97 EAAPGVRGRSGHRAASKGEAGPHLPHPQGKQGED 198 + PG+ G GHR + P LP G +GED Sbjct: 601 DGLPGLPGDKGHRGERGPQGPPGLPGDDGMRGED 634
>MYH11_RABIT (P35748) Myosin-11 (Myosin heavy chain, smooth muscle isoform)| (SMMHC) Length = 1972 Score = 30.0 bits (66), Expect = 3.2 Identities = 19/64 (29%), Positives = 34/64 (53%) Frame = +2 Query: 35 ERDRGIIMAQQSGNDLKTVMEKLLQAFEDEVDTELPQREKLDHIFRILKANKEKIISEPP 214 ERDR A+ + +T L +A E+ ++ +E+L+ ++LKA E ++S Sbjct: 1470 ERDR----AEAEAREKETKALSLARALEEALEA----KEELERTNKMLKAEMEDLVSSKD 1521 Query: 215 EVGK 226 +VGK Sbjct: 1522 DVGK 1525
>MYH11_MOUSE (O08638) Myosin-11 (Myosin heavy chain, smooth muscle isoform)| (SMMHC) Length = 1972 Score = 30.0 bits (66), Expect = 3.2 Identities = 19/64 (29%), Positives = 34/64 (53%) Frame = +2 Query: 35 ERDRGIIMAQQSGNDLKTVMEKLLQAFEDEVDTELPQREKLDHIFRILKANKEKIISEPP 214 ERDR A+ + +T L +A E+ ++ +E+L+ ++LKA E ++S Sbjct: 1470 ERDR----AEAEAREKETKALSLARALEEALEA----KEELERTNKMLKAEMEDLVSSKD 1521 Query: 215 EVGK 226 +VGK Sbjct: 1522 DVGK 1525
>MYH11_HUMAN (P35749) Myosin-11 (Myosin heavy chain, smooth muscle isoform)| (SMMHC) Length = 1972 Score = 30.0 bits (66), Expect = 3.2 Identities = 19/64 (29%), Positives = 34/64 (53%) Frame = +2 Query: 35 ERDRGIIMAQQSGNDLKTVMEKLLQAFEDEVDTELPQREKLDHIFRILKANKEKIISEPP 214 ERDR A+ + +T L +A E+ ++ +E+L+ ++LKA E ++S Sbjct: 1470 ERDR----AEAEAREKETKALSLARALEEALEA----KEELERTNKMLKAEMEDLVSSKD 1521 Query: 215 EVGK 226 +VGK Sbjct: 1522 DVGK 1525
>COEA1_CHICK (P32018) Collagen alpha-1(XIV) chain precursor (Undulin)| Length = 1888 Score = 30.0 bits (66), Expect = 3.2 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 6/35 (17%) Frame = +1 Query: 106 PGVRGRSGHRA--ASKGEAGPH----LPHPQGKQG 192 PGVRG GHR KG GP +P PQG G Sbjct: 1480 PGVRGAKGHRGDPGPKGPDGPRGEIGVPGPQGPPG 1514
>MYH11_RAT (Q63862) Myosin-11 (Myosin heavy chain, smooth muscle isoform)| (SMMHC) (Fragments) Length = 1327 Score = 30.0 bits (66), Expect = 3.2 Identities = 19/64 (29%), Positives = 34/64 (53%) Frame = +2 Query: 35 ERDRGIIMAQQSGNDLKTVMEKLLQAFEDEVDTELPQREKLDHIFRILKANKEKIISEPP 214 ERDR A+ + +T L +A E+ ++ +E+L+ ++LKA E ++S Sbjct: 825 ERDR----AEAEAREKETKALSLARALEEALEA----KEELERTNKMLKAEMEDLVSSKD 876 Query: 215 EVGK 226 +VGK Sbjct: 877 DVGK 880
>MYH11_CHICK (P10587) Myosin-11 (Myosin heavy chain, gizzard smooth muscle)| Length = 1978 Score = 30.0 bits (66), Expect = 3.2 Identities = 19/64 (29%), Positives = 34/64 (53%) Frame = +2 Query: 35 ERDRGIIMAQQSGNDLKTVMEKLLQAFEDEVDTELPQREKLDHIFRILKANKEKIISEPP 214 ERDR A+ + +T L +A E+ ++ +E+L+ ++LKA E ++S Sbjct: 1475 ERDR----AEAEAREKETKALSLARALEEALEA----KEELERTNKMLKAEMEDLVSSKD 1526 Query: 215 EVGK 226 +VGK Sbjct: 1527 DVGK 1530
>MUTS_STAS1 (Q49X88) DNA mismatch repair protein mutS| Length = 887 Score = 30.0 bits (66), Expect = 3.2 Identities = 17/63 (26%), Positives = 34/63 (53%) Frame = +2 Query: 44 RGIIMAQQSGNDLKTVMEKLLQAFEDEVDTELPQREKLDHIFRILKANKEKIISEPPEVG 223 R +I + S +++ + + LLQAF++++ + E LD + +L E+ + E P + Sbjct: 348 RDLIQLKHSISEIPNI-KNLLQAFDEQMTAQFEALEPLDDLLNLL----EESLKEEPPIS 402 Query: 224 KKE 232 KE Sbjct: 403 VKE 405
>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1419 Score = 29.6 bits (65), Expect = 4.1 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Frame = +1 Query: 58 GAAKRQ*SQDCNGEAA-PGVRGRSGHRAASKGEAGPHLPHPQGKQG 192 G A Q + GEA PG RG GHR + + P P P G QG Sbjct: 1039 GIAGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQG 1084
>CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor| Length = 1685 Score = 29.6 bits (65), Expect = 4.1 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 10/39 (25%) Frame = +1 Query: 106 PGVRGRSGHRAASKGEAGP----------HLPHPQGKQG 192 PG+ G SG KG+AGP LP PQG QG Sbjct: 1359 PGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQG 1397
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 29.3 bits (64), Expect = 5.4 Identities = 15/33 (45%), Positives = 16/33 (48%) Frame = +1 Query: 97 EAAPGVRGRSGHRAASKGEAGPHLPHPQGKQGE 195 + APG G G G GP LP P GK GE Sbjct: 586 DGAPGKNGERG------GPGGPGLPGPAGKNGE 612 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%) Frame = +1 Query: 106 PGVRGRSGHRAA--SKGEAG-PHLPHPQGKQGED 198 PG G G A +GEAG P +P P+G+ G+D Sbjct: 433 PGKNGAKGEPGARGERGEAGSPGIPGPKGEDGKD 466
>CLPX_MANSM (Q65RF7) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 412 Score = 29.3 bits (64), Expect = 5.4 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 24/85 (28%) Frame = +2 Query: 71 GNDLKTVMEKLLQAFEDEVDTELPQR-----EKLDHIFR-------------------IL 178 G D++ V++KLLQ + DTE QR +++D I R +L Sbjct: 154 GEDVENVIQKLLQ--NCDYDTEKAQRGIIYIDEIDKITRKSENPSITRDVSGEGVQQALL 211 Query: 179 KANKEKIISEPPEVGKKEKLPELLR 253 K + + S PP+ G+K E+LR Sbjct: 212 KLIEGTVASIPPQGGRKHPQQEMLR 236
>PEPB_STRA5 (Q8E0C9) Group B oligopeptidase pepB (EC 3.4.24.-)| Length = 601 Score = 29.3 bits (64), Expect = 5.4 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Frame = +2 Query: 98 KLLQAFEDEVDT---ELPQREKLDHIFRILKANKEKIISEPPE 217 +LLQ E + + E+P +K DH F + ANK ++S+ E Sbjct: 112 ELLQLSESDYQSFLLEMPDLQKYDHFFEKIFANKPHVLSQNEE 154
>PEPB_STRA3 (Q53778) Group B oligopeptidase pepB (EC 3.4.24.-)| Length = 601 Score = 29.3 bits (64), Expect = 5.4 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Frame = +2 Query: 98 KLLQAFEDEVDT---ELPQREKLDHIFRILKANKEKIISEPPE 217 +LLQ E + + E+P +K DH F + ANK ++S+ E Sbjct: 112 ELLQLSESDYQSFLLEMPDLQKYDHFFEKIFANKPHVLSQNEE 154
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor| Length = 1463 Score = 29.3 bits (64), Expect = 5.4 Identities = 15/33 (45%), Positives = 16/33 (48%) Frame = +1 Query: 97 EAAPGVRGRSGHRAASKGEAGPHLPHPQGKQGE 195 + APG G G G GP LP P GK GE Sbjct: 586 DGAPGKNGERG------GPGGPGLPGPAGKNGE 612 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%) Frame = +1 Query: 106 PGVRGRSGHRAA--SKGEAG-PHLPHPQGKQGED 198 PG G G A +GEAG P +P P+G+ G+D Sbjct: 433 PGKNGAKGEPGARGERGEAGSPGIPGPKGEDGKD 466
>OTO1_ONCKE (P83371) Otolin-1 precursor| Length = 508 Score = 29.3 bits (64), Expect = 5.4 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Frame = +1 Query: 85 DCNGEAAPGVRGRSGHRAASKGEAGPHLPH----PQGKQGE 195 + G PG+RG G KGE GP P P+G QGE Sbjct: 333 EAGGRGPPGLRGMPG----PKGEKGPKGPRGVRGPKGPQGE 369
>INO80_DEBHA (Q6BGY8) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1364 Score = 28.9 bits (63), Expect = 7.1 Identities = 17/64 (26%), Positives = 38/64 (59%) Frame = +2 Query: 74 NDLKTVMEKLLQAFEDEVDTELPQREKLDHIFRILKANKEKIISEPPEVGKKEKLPELLR 253 NDL+ + ++ L+ FED+V+ K+D + ++K N +++++ ++E L L+R Sbjct: 117 NDLEHISQRYLENFEDKVNA----INKIDQV--LIKGNNMRVLNQ-----EEENLNILIR 165 Query: 254 SIGD 265 + G+ Sbjct: 166 NSGE 169
>CO6A3_HUMAN (P12111) Collagen alpha-3(VI) chain precursor| Length = 3176 Score = 28.9 bits (63), Expect = 7.1 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 6/38 (15%) Frame = +1 Query: 103 APGVRGRSGH--RAASKGEAGPH----LPHPQGKQGED 198 APG RGR+G R GE GP P P+G+ G+D Sbjct: 2259 APGERGRTGPLGRKGEPGEPGPKGGIGNPGPRGETGDD 2296
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 28.9 bits (63), Expect = 7.1 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Frame = +1 Query: 94 GEAA-PGVRGRSGHRAASKGEAGPHLPHPQGKQG 192 GEA PG RG GHR + + P P P G QG Sbjct: 1050 GEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQG 1083
>CO9A3_HUMAN (Q14050) Collagen alpha-3(IX) chain precursor| Length = 684 Score = 28.9 bits (63), Expect = 7.1 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = +1 Query: 103 APGVRGRSGHRAASKGEAG-PHLPHPQGKQGE 195 APGVRG G KG G P LP PQG +G+ Sbjct: 398 APGVRGFQGQ----KGSMGDPGLPGPQGLRGD 425
>TOP1_SYNY3 (P73810) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 898 Score = 28.5 bits (62), Expect = 9.2 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +1 Query: 139 ASKGEAGPHLPHPQGKQGEDH 201 AS G GP++ H QGK G+D+ Sbjct: 734 ASLGRFGPYVVHDQGKDGKDY 754
>IGHA_MOUSE (P01878) Ig alpha chain C region| Length = 344 Score = 28.5 bits (62), Expect = 9.2 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +2 Query: 335 SKKMTMPSVSDCNPFKSRSSQLSVDVDPLLEQTIAILGDVPPPP 466 S ++T+P+V +C +S + D +P+ E + G PPPP Sbjct: 66 SNQLTLPAV-ECPEGESVKCSVQHDSNPVQELDVNCSGPTPPPP 108
>CV019_HUMAN (Q13769) Protein C22orf19 (NF2/meningioma region protein pK1.3)| (Placental protein 39.2) Length = 683 Score = 28.5 bits (62), Expect = 9.2 Identities = 20/41 (48%), Positives = 26/41 (63%) Frame = +2 Query: 125 VDTELPQREKLDHIFRILKANKEKIISEPPEVGKKEKLPEL 247 +D EL QR++L +R +NKEKI+ E EV KKE L L Sbjct: 191 LDWELEQRKRLAEKYRECLSNKEKILKE-IEV-KKEYLSSL 229
>YA4E_SCHPO (Q09731) Hypothetical WD-repeat protein C31A2.14 in chromosome I| Length = 962 Score = 28.5 bits (62), Expect = 9.2 Identities = 18/48 (37%), Positives = 23/48 (47%) Frame = +2 Query: 329 AKSKKMTMPSVSDCNPFKSRSSQLSVDVDPLLEQTIAILGDVPPPPFP 472 A+ + MPS +SR S LS+ +PLL TI D PFP Sbjct: 556 ARKGNVNMPSALSPLRIRSRPSPLSLPPEPLLSPTI----DYSATPFP 599
>RLUB_XANCP (Q8P8M6) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 492 Score = 28.5 bits (62), Expect = 9.2 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +1 Query: 118 GRSGHRAASKGEAGPHLPHPQGKQG 192 G SGHR A G AG P P K+G Sbjct: 396 GPSGHRNAGPGGAGTGQPRPYAKKG 420 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,646,728 Number of Sequences: 219361 Number of extensions: 920588 Number of successful extensions: 5362 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 4726 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5338 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
