ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet45f12 |
|---|---|
| Clone Library Name | barley_pub |
>SMAD6_HUMAN (O43541) Mothers against decapentaplegic homolog 6 (SMAD 6)| (Mothers against DPP homolog 6) (Smad6) (hSMAD6) Length = 496 Score = 32.7 bits (73), Expect = 0.22 Identities = 24/76 (31%), Positives = 24/76 (31%) Frame = +1 Query: 145 GDHHRAANEVAAGSGCGCGGDRPANDGRERSVVDTXXXXXXXXXXXXXXXXRQDPEPGAD 324 G A G GCG RP R R V R EPGA Sbjct: 40 GSRAEPAPRAREGGGCGRSEVRPVAPRRPRDAVGQRGAQGAGRRRRAGGPPRPMSEPGA- 98 Query: 325 GGGLRARAVPEPGAPG 372 G G V EPG PG Sbjct: 99 GAGSSLLDVAEPGGPG 114
>AVEN_HUMAN (Q9NQS1) Cell death regulator Aven| Length = 362 Score = 30.4 bits (67), Expect = 1.1 Identities = 28/86 (32%), Positives = 30/86 (34%), Gaps = 4/86 (4%) Frame = +1 Query: 136 RRGGDHHR----AANEVAAGSGCGCGGDRPANDGRERSVVDTXXXXXXXXXXXXXXXXRQ 303 R GGD H AA VA G G G GGD GR R + Sbjct: 19 RPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRG------------------RGFR 60 Query: 304 DPEPGADGGGLRARAVPEPGAPGRGA 381 G GGG + EPG G GA Sbjct: 61 GARGGRGGGGAPRGSRREPGGWGAGA 86
>CAC1H_HUMAN (O95180) Voltage-dependent T-type calcium channel alpha-1H subunit| (Voltage-gated calcium channel alpha subunit Cav3.2) (Low-voltage-activated calcium channel alpha1 3.2 subunit) Length = 2353 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%) Frame = +1 Query: 298 RQDPEPGA-DGGGLRARAVPEPGAPGRG 378 R PEPGA D +RA A P P +PGRG Sbjct: 538 RPGPEPGACDTRLVRAGAPPSPPSPGRG 565
>FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger protein multitype| 1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1) Length = 1004 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/28 (50%), Positives = 15/28 (53%) Frame = +1 Query: 298 RQDPEPGADGGGLRARAVPEPGAPGRGA 381 R P PGA G A PE GA GRG+ Sbjct: 634 RSSPGPGAREEGAGGAATPEDGAGGRGS 661
>POLR_TYMVA (P20128) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1844 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = +2 Query: 68 YASTSLPVAKPHSLPSSAKLPSTAAAAITTVQPTK 172 +ASTS+P P + A+ P+T AA T ++PT+ Sbjct: 596 FASTSVPRPPPVASSLGAQPPTTTAAPPTPIEPTQ 630
>LIPA2_SYNY3 (P73572) Lipoyl synthase 2 (EC 2.8.1.-) (Lipoic acid synthase 2)| (Lipoate synthase 2) (Lipoyl-acyl-carrier protein synthase 2) (Sulfur insertion protein lipA2) (Lip-syn 2) Length = 303 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/38 (44%), Positives = 21/38 (55%) Frame = +2 Query: 50 MPLCSFYASTSLPVAKPHSLPSSAKLPSTAAAAITTVQ 163 MP SF +SLP P LPS K P A+ ++TVQ Sbjct: 1 MPQQSFMNGSSLPREFPPRLPSWLKRPIGRASELSTVQ 38
>LEGB7_VICFA (P16080) Legumin type B [Contains: Legumin type B alpha chain| (Legumin type B acidic chain); Legumin type B beta chain (Legumin type B basic chain)] (Fragment) Length = 335 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Frame = -2 Query: 388 GLRRR-VPERRVQGQRAPVVHPH 323 GLR+R V E ++ G R P+VHPH Sbjct: 307 GLRQRQVTELKLSGNRGPLVHPH 329
>PODXL_RABIT (Q28645) Podocalyxin-like protein 1 precursor| Length = 551 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -1 Query: 236 LRSLPSLAGRSPPQPQPEPAATSLAAR 156 L S PSL+ PQP P P ATS + R Sbjct: 14 LLSPPSLSQEKSPQPGPTPMATSTSTR 40
>CAC1H_RAT (Q9EQ60) Voltage-dependent T-type calcium channel alpha-1H subunit| (Voltage-gated calcium channel alpha subunit Cav3.2) Length = 2359 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Frame = +1 Query: 298 RQDPEPGA-DGGGLRARAVPEPGAPGRG 378 R PEPGA D +RA A P P +PG G Sbjct: 539 RPSPEPGAGDNRLVRACAPPSPPSPGHG 566
>ZN342_HUMAN (Q8WUU4) Zinc finger protein 342| Length = 475 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 1/26 (3%) Frame = +1 Query: 307 PEPGADGGGLRARA-VPEPGAPGRGA 381 P G +G G A A V EPGAPG GA Sbjct: 318 PCSGGEGAGAAATAGVQEPGAPGSGA 343
>NKX12_MOUSE (P42580) NK1 transcription factor-related protein 2 (Homeobox| protein SAX-1) (NKX-1.1) Length = 305 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +1 Query: 313 PGADGGGLRARAVPEPGAPGRGAG 384 PGADG P+PG PG AG Sbjct: 216 PGADGAVQAGGGAPQPGTPGAVAG 239
>GCP60_HUMAN (Q9H3P7) Golgi resident protein GCP60 (Acyl-CoA-binding| domain-containing protein 3) (Golgi phosphoprotein 1) (GOLPH1) (Golgi complex-associated protein 1) (GOCAP1) (PBR- and PKA-associated protein 7) (Peripherial benzodiazepine receptor-asso Length = 527 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%) Frame = +1 Query: 304 DPE--PGADGGGLRARAVPEPGAPGRGAG 384 DPE PGA+G L +P P PG G G Sbjct: 21 DPEERPGAEGAPLLPPPLPPPSPPGSGRG 49
>RBP56_HUMAN (Q92804) TATA-binding protein-associated factor 2N (RNA-binding| protein 56) (TAFII68) (TAF(II)68) Length = 592 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/32 (43%), Positives = 15/32 (46%) Frame = +1 Query: 142 GGDHHRAANEVAAGSGCGCGGDRPANDGRERS 237 GGD R G G G GGDR G +RS Sbjct: 523 GGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRS 554
>PITX1_HUMAN (P78337) Pituitary homeobox 1 (Hindlimb expressed homeobox protein| backfoot) Length = 314 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +1 Query: 121 QAPFHRRGGDHHRAANEVAAGSGCGCGGDRPANDGRER 234 + P RGG+ + A G+GCG G D PA ++R Sbjct: 54 ELPEKERGGEPKGPEDSGAGGTGCG-GADDPAKKKKQR 90
>HXD11_MOUSE (P23813) Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5)| Length = 323 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 4/31 (12%) Frame = +1 Query: 304 DPEPGADGGG----LRARAVPEPGAPGRGAG 384 DP+PGA GGG +A PEP G G Sbjct: 197 DPKPGAGGGGGSPCAKATPGPEPKGAAEGGG 227
>TRPG_ASPAW (P18483) Anthranilate synthase component 2 (EC 4.1.3.27)| (Anthranilate synthase component II) [Includes: Glutamine amidotransferase; Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS); N-(5'-phosphoribosyl)anthranilate isomerase (EC 5.3 Length = 768 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = -1 Query: 248 VSTTLRSLPSLAGRSPPQPQPEPAATSL 165 +S ++S+P AG++PP + PAA S+ Sbjct: 576 ISQVVKSIPKPAGQTPPTSRGTPAAASV 603
>TWST1_PONPY (Q8MIB9) Twist-related protein 1| Length = 203 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +1 Query: 118 RQAPFHRRGGDHHRAANEVAAGSGCGCGG 204 +Q P +RGG R+++ +AG G G GG Sbjct: 27 QQPPSGKRGGRKRRSSSRRSAGGGAGPGG 55
>TRPD_DEIRA (Q9RTJ5) Anthranilate phosphoribosyltransferase (EC 2.4.2.18)| Length = 338 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/43 (37%), Positives = 26/43 (60%) Frame = +2 Query: 254 EALSLHLPELPSAMRDKILSLELMGVDYGRALSLNPALRDAAP 382 EAL ++L P +++ I + +GV + A + +PALR AAP Sbjct: 127 EALGVNLDASPEVIQEAI---DTLGVGFMFARNYHPALRHAAP 166
>COIA1_MOUSE (P39061) Collagen alpha-1(XVIII) chain precursor [Contains:| Endostatin] Length = 1774 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%) Frame = +1 Query: 310 EPGADGGGLRARAVP-EPGAPG 372 EPGA GGG + +VP PG PG Sbjct: 1362 EPGAPGGGFFSSSVPGPPGPPG 1383
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/42 (30%), Positives = 26/42 (61%) Frame = +2 Query: 44 ATMPLCSFYASTSLPVAKPHSLPSSAKLPSTAAAAITTVQPT 169 +T+P S +T P P SLP+ + + + +++ +TT++PT Sbjct: 4833 STVPSSSTVGTTRTPAVLPSSLPTFS-VSTVSSSVLTTLRPT 4873
>POLR_TYMVC (P28477) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1844 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +2 Query: 68 YASTSLPVAKPHSLPSSAKLPSTAAAAITTVQPTK 172 +AST +P P + A+ P+T AA T ++PT+ Sbjct: 596 FASTFVPRPPPAASSPGAQPPTTTAAPPTPIEPTQ 630
>POLR_TYMV (P10358) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1844 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +2 Query: 68 YASTSLPVAKPHSLPSSAKLPSTAAAAITTVQPTK 172 +AST +P P + A+ P+T AA T ++PT+ Sbjct: 596 FASTFVPRPPPAASSPGAQPPTTTAAPPTPIEPTQ 630
>ZN265_HUMAN (O95218) Zinc finger protein 265 (Zinc finger, splicing)| Length = 337 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/45 (42%), Positives = 26/45 (57%) Frame = -3 Query: 384 SGAASRSAGFRDSARP*STPISSRLRILSRIADGSSGRCRDSASA 250 S + SRS+ R S+R S+P SSR R SR SS + R +S+ Sbjct: 202 SRSKSRSSHSRSSSRS-SSPSSSRSRSRSRSRSSSSSQSRSRSSS 245
>SRBP2_CRIGR (Q60429) Sterol regulatory element-binding protein 2 (SREBP-2)| (Sterol regulatory element-binding transcription factor 2) Length = 1139 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -1 Query: 242 TTLRSLPSLAGRSPPQPQPEPAA 174 T R+ P L R PQPQP+P+A Sbjct: 119 TPPRATPVLQPRPQPQPQPQPSA 141
>CO4A1_HUMAN (P02462) Collagen alpha-1(IV) chain precursor| Length = 1669 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = +1 Query: 301 QDPEPGADGGGLRARAVPEPGAPGRG 378 Q EPG+DG A EPG PGRG Sbjct: 1149 QKGEPGSDGIPGSAGEKGEPGLPGRG 1174
>KCAB3_HUMAN (O43448) Voltage-gated potassium channel beta-3 subunit (K(+)| channel beta-3 subunit) (Kv-beta-3) Length = 404 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +1 Query: 313 PGADGGGLRARAVPEPGAPGRGAGV 387 PG G G +ARA PG P G V Sbjct: 44 PGGGGSGPKARAAVVPGPPAPGGAV 68
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 4/26 (15%) Frame = +1 Query: 313 PGADGGGLRARAVP----EPGAPGRG 378 PG + GG++A VP +PG PG G Sbjct: 1569 PGPEDGGVKASPVPSDPEKPGTPGEG 1594
>FTSZ_CAUCR (P52976) Cell division protein ftsZ| Length = 508 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -1 Query: 248 VSTTLRSLPSLAGRSPPQPQPEPA 177 VS + + P +A S P PQPEPA Sbjct: 332 VSRNISAAPLIAETSRPAPQPEPA 355
>OKL38_HUMAN (Q9UJX0) Pregnancy-induced growth inhibitor OKL38 (huOKL38) (Ovary,| kidney and liver protein 38) Length = 560 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/32 (37%), Positives = 15/32 (46%) Frame = -1 Query: 248 VSTTLRSLPSLAGRSPPQPQPEPAATSLAARW 153 V TL S + R+ PQPQP+P W Sbjct: 20 VPATLTSSELFSTRTQPQPQPQPLLADAPVPW 51
>DYR13_ECOLI (Q59408) Dihydrofolate reductase type A13 (EC 1.5.1.3)| (Dihydrofolate reductase type XIII) (DHFRXIII) Length = 165 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = -3 Query: 165 GCTVVIAAAAVEGSLAEEGREWGFATGREVEA 70 GC VV + V S AE G+E A G EV A Sbjct: 78 GCAVVSTLSHVSPSTAEHGKELYVARGAEVYA 109
>FIG2_YEAST (P25653) Factor-induced gene 2 precursor (Cell wall adhesin FIG2)| Length = 1609 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +2 Query: 98 PHSLPSSAKLPSTAAAAITTVQPTKS 175 P + PSS+ LPS+ + T+V P++S Sbjct: 151 PVTAPSSSSLPSSTSLTFTSVNPSQS 176 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.138 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,047,358 Number of Sequences: 219361 Number of extensions: 644282 Number of successful extensions: 4377 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3665 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4346 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
