ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet44h07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476066.1| Oryza sativa (japonica cultivar-group), predic... 62 1e-06
2gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome... 62 1e-06
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
4gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome... 62 1e-06
5ref|XM_471860.1| Oryza sativa (japonica cultivar-group), predic... 50 0.005
6emb|AL731634.4|OSJN00276 Oryza sativa genomic DNA, chromosome 4,... 50 0.005
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
8ref|XM_483068.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.021
9dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
10dbj|AP004620.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
11dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
12ref|XM_471827.1| Oryza sativa (japonica cultivar-group), predic... 44 0.33
13ref|XM_471859.1| Oryza sativa (japonica cultivar-group), predic... 44 0.33
14ref|XM_471823.1| Oryza sativa (japonica cultivar-group), predic... 44 0.33
15gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 44 0.33
16gb|AC015878.7| Homo sapiens, clone RP11-296E23, complete sequence 44 0.33
17emb|AL663021.4|OSJN00218 Oryza sativa genomic DNA, chromosome 4,... 44 0.33
18dbj|AK119530.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.33
19dbj|AK105966.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.33
20dbj|AK105783.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.33
21emb|AL606443.3|OSJN00008 Oryza sativa genomic DNA, chromosome 4,... 44 0.33
22ref|XM_482293.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.3
23ref|XM_471830.1| Oryza sativa (japonica cultivar-group), predic... 42 1.3
24ref|XM_471822.1| Oryza sativa (japonica cultivar-group), predic... 42 1.3
25ref|XM_506982.1| PREDICTED Oryza sativa (japonica cultivar-group... 42 1.3
26ref|XM_467869.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.3
27ref|XM_467864.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.3
28gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 42 1.3
29gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 42 1.3
30dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
31gb|AE004846.1| Pseudomonas aeruginosa PAO1, section 407 of 529 o... 42 1.3
32dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
33dbj|AP004636.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
34dbj|AP003872.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
35dbj|AK104985.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
36dbj|AK073587.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
37dbj|AK066301.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
38ref|XM_469663.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.1
39gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.1
40gb|AC096855.5| Oryza sativa chromosome 3 BAC OJ1365_D05 genomic ... 40 5.1
41gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 5.1
42emb|X92503.1|MSORIREP M.smegmatis origin of replication and gene... 40 5.1
43emb|BX321863.1| Nitrosomonas europaea ATCC 19718, complete genom... 40 5.1
44emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete ... 40 5.1
45emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete ... 40 5.1
46gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 40 5.1
47dbj|AB087703.1| Mycobacterium smegmatis dnaA gene for DnaA, part... 40 5.1
48gb|AC074035.22| Homo sapiens Xp BAC RP11-707P20 (Roswell Park Ca... 40 5.1
49dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
50dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
51dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.1
52gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.1
53dbj|AP006050.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
54dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
55dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.1
56gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putativ... 40 5.1
57gb|AC154846.2| Mus musculus BAC clone RP23-45E1 from 14, complet... 40 5.1
58gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.1
59gb|L13767.1|STMSEC101A Streptomyus lividans sec101 gene, 5' end ... 40 5.1 
>ref|XM_476066.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1473

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                          
Query: 338 cccgtcacctgcgcagtgtacacgctgcttatgccgtgggtggccgg 384
           |||||||| ||||| ||||||||||||||  ||||||||||||||||
Sbjct: 343 cccgtcacgtgcgccgtgtacacgctgctcctgccgtgggtggccgg 389



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                          
Query: 5  atcgtgacgtacccggcgcagggccacatcac 36
          ||||| ||||||||| ||||||||||| ||||
Sbjct: 31 atcgtcacgtacccgtcgcagggccacgtcac 62
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>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09,
              complete sequence
          Length = 145070

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                             
Query: 338    cccgtcacctgcgcagtgtacacgctgcttatgccgtgggtggccgg 384
              |||||||| ||||| ||||||||||||||  ||||||||||||||||
Sbjct: 110696 cccgtcacgtgcgccgtgtacacgctgctcctgccgtgggtggccgg 110650



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 5      atcgtgacgtacccggcgcagggccacatcac 36
              ||||| ||||||||| ||||||||||| ||||
Sbjct: 111008 atcgtcacgtacccgtcgcagggccacgtcac 110977
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                              
Query: 338     cccgtcacctgcgcagtgtacacgctgcttatgccgtgggtggccgg 384
               |||||||| ||||| ||||||||||||||  ||||||||||||||||
Sbjct: 4742691 cccgtcacgtgcgccgtgtacacgctgctcctgccgtgggtggccgg 4742645



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 5       atcgtgacgtacccggcgcagggccacatcac 36
               ||||| ||||||||| ||||||||||| ||||
Sbjct: 4743003 atcgtcacgtacccgtcgcagggccacgtcac 4742972
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>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11,
             complete sequence
          Length = 187956

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                            
Query: 338   cccgtcacctgcgcagtgtacacgctgcttatgccgtgggtggccgg 384
             |||||||| ||||| ||||||||||||||  ||||||||||||||||
Sbjct: 15099 cccgtcacgtgcgccgtgtacacgctgctcctgccgtgggtggccgg 15053



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 5     atcgtgacgtacccggcgcagggccacatcac 36
             ||||| ||||||||| ||||||||||| ||||
Sbjct: 15411 atcgtcacgtacccgtcgcagggccacgtcac 15380
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>ref|XM_471860.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1479

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 12 cgtacccggcgcagggccacatcac 36
          |||||||||||||||||||||||||
Sbjct: 35 cgtacccggcgcagggccacatcac 59
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>emb|AL731634.4|OSJN00276 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0033P05,
             complete sequence
          Length = 120635

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 12    cgtacccggcgcagggccacatcac 36
             |||||||||||||||||||||||||
Sbjct: 57764 cgtacccggcgcagggccacatcac 57740



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 3     tgatcgtgacgtacccggcgcagggccacatcac 36
             |||| ||| |||||||||||||||||||| ||||
Sbjct: 45159 tgatggtgccgtacccggcgcagggccacgtcac 45126
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                         
Query: 12       cgtacccggcgcagggccacatcac 36
                |||||||||||||||||||||||||
Sbjct: 15164869 cgtacccggcgcagggccacatcac 15164845



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 3        tgatcgtgacgtacccggcgcagggccacatcac 36
                |||| ||| |||||||||||||||||||| ||||
Sbjct: 15152264 tgatggtgccgtacccggcgcagggccacgtcac 15152231



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 3        tgatcgtgacgtacccggcgcagggccacatcac 36
                |||| ||| |||||||||||||||||||| ||||
Sbjct: 14787170 tgatggtgccgtacccggcgcagggccacgtcac 14787137



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                  
Query: 3        tgatcgtgacgtacccggcgcagggccacatcac 36
                |||| ||| |||||||||||||||||||| ||||
Sbjct: 14735621 tgatggtgccgtacccggcgcagggccacgtcac 14735654



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 12       cgtacccggcgcagggccacatcac 36
                |||||||||||||||||||| ||||
Sbjct: 14830395 cgtacccggcgcagggccacgtcac 14830419



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 12       cgtacccggcgcagggccacatcac 36
                |||||||||||||||||||| ||||
Sbjct: 14723125 cgtacccggcgcagggccacgtcac 14723149
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>ref|XM_483068.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1467

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 6   tcgtgacgtacccggcgcagggccacat 33
           ||||| ||||||||||||||||||||||
Sbjct: 89  tcgtgccgtacccggcgcagggccacat 116
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                            
Query: 6        tcgtgacgtacccggcgcagggccacat 33
                ||||| ||||||||||||||||||||||
Sbjct: 24136076 tcgtgccgtacccggcgcagggccacat 24136103



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 12       cgtacccggcgcagggccacatcac 36
                |||||||||||||||||||| ||||
Sbjct: 19285650 cgtacccggcgcagggccacgtcac 19285674
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>dbj|AP004620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0605H02
          Length = 175547

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                        
Query: 6    tcgtgacgtacccggcgcagggccacat 33
            ||||| ||||||||||||||||||||||
Sbjct: 2415 tcgtgccgtacccggcgcagggccacat 2442
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>dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0028A08
          Length = 150818

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 6     tcgtgacgtacccggcgcagggccacat 33
             ||||| ||||||||||||||||||||||
Sbjct: 89562 tcgtgccgtacccggcgcagggccacat 89589
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>ref|XM_471827.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1494

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                            
Query: 3  tgatcgtgacgtacccggcgcagggccacatcac 36
          |||| ||| |||||||||||||||||||| ||||
Sbjct: 44 tgatggtgccgtacccggcgcagggccacgtcac 77
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>ref|XM_471859.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1491

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                            
Query: 3  tgatcgtgacgtacccggcgcagggccacatcac 36
          |||| ||| |||||||||||||||||||| ||||
Sbjct: 41 tgatggtgccgtacccggcgcagggccacgtcac 74
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>ref|XM_471823.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1491

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                            
Query: 3  tgatcgtgacgtacccggcgcagggccacatcac 36
          |||| ||| |||||||||||||||||||| ||||
Sbjct: 41 tgatggtgccgtacccggcgcagggccacgtcac 74
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 310     gctccggcgcctcggcgatcgcgggc 335
               |||||||||||||||||||| |||||
Sbjct: 2412416 gctccggcgcctcggcgatctcgggc 2412441
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>gb|AC015878.7| Homo sapiens, clone RP11-296E23, complete sequence
          Length = 160569

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 338   cccgtcacctgcgcagtgtacacgct 363
             ||||||||||| ||||||||||||||
Sbjct: 85126 cccgtcacctgagcagtgtacacgct 85151
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>emb|AL663021.4|OSJN00218 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041M06,
             complete sequence
          Length = 107014

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 3     tgatcgtgacgtacccggcgcagggccacatcac 36
             |||| ||| |||||||||||||||||||| ||||
Sbjct: 41108 tgatggtgccgtacccggcgcagggccacgtcac 41075



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 12    cgtacccggcgcagggccacatcac 36
             |||||||||||||||||||| ||||
Sbjct: 84333 cgtacccggcgcagggccacgtcac 84357
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>dbj|AK119530.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-C07, full
           insert sequence
          Length = 1673

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 3   tgatcgtgacgtacccggcgcagggccacatcac 36
           |||| ||| |||||||||||||||||||| ||||
Sbjct: 139 tgatggtgccgtacccggcgcagggccacgtcac 172
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>dbj|AK105966.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-E07, full
           insert sequence
          Length = 1665

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 3   tgatcgtgacgtacccggcgcagggccacatcac 36
           |||| ||| |||||||||||||||||||| ||||
Sbjct: 136 tgatggtgccgtacccggcgcagggccacgtcac 169
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>dbj|AK105783.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-G07, full
           insert sequence
          Length = 1640

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 3   tgatcgtgacgtacccggcgcagggccacatcac 36
           |||| ||| |||||||||||||||||||| ||||
Sbjct: 80  tgatggtgccgtacccggcgcagggccacgtcac 113
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>emb|AL606443.3|OSJN00008 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0026L04,
              complete sequence
          Length = 129563

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 3      tgatcgtgacgtacccggcgcagggccacatcac 36
              |||| ||| |||||||||||||||||||| ||||
Sbjct: 126824 tgatggtgccgtacccggcgcagggccacgtcac 126791



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 3     tgatcgtgacgtacccggcgcagggccacatcac 36
             |||| ||| |||||||||||||||||||| ||||
Sbjct: 75275 tgatggtgccgtacccggcgcagggccacgtcac 75308



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 12    cgtacccggcgcagggccacatcac 36
             |||||||||||||||||||| ||||
Sbjct: 62779 cgtacccggcgcagggccacgtcac 62803
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>ref|XM_482293.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1494

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 12 cgtacccggcgcagggccacatcac 36
          |||||||||||||||||||| ||||
Sbjct: 71 cgtacccggcgcagggccacgtcac 95
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>ref|XM_471830.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1428

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 12 cgtacccggcgcagggccacatcac 36
          |||||||||||||||||||| ||||
Sbjct: 71 cgtacccggcgcagggccacgtcac 95
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>ref|XM_471822.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1431

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 12 cgtacccggcgcagggccacatcac 36
          |||||||||||||||||||| ||||
Sbjct: 8  cgtacccggcgcagggccacgtcac 32
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>ref|XM_506982.1| PREDICTED Oryza sativa (japonica cultivar-group), P0627E03.33 mRNA
          Length = 1676

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 12  cgtacccggcgcagggccacatcac 36
           |||||||||||||||| ||||||||
Sbjct: 123 cgtacccggcgcaggggcacatcac 147
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>ref|XM_467869.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1659

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 12  cgtacccggcgcagggccacatcac 36
           |||||||||||||||| ||||||||
Sbjct: 126 cgtacccggcgcaggggcacatcac 150
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>ref|XM_467864.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1597

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 12 cgtacccggcgcagggccacatcac 36
          |||||||||||||||||||| ||||
Sbjct: 59 cgtacccggcgcagggccacgtcac 83
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 150     caaccgcggtgggcggcggcgacga 174
               ||||||||||| |||||||||||||
Sbjct: 2021300 caaccgcggtgagcggcggcgacga 2021324
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 158     gtgggcggcggcgacgagata 178
               |||||||||||||||||||||
Sbjct: 3388902 gtgggcggcggcgacgagata 3388882
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 12       cgtacccggcgcagggccacatcac 36
                |||||||||||||||| ||||||||
Sbjct: 31824594 cgtacccggcgcaggggcacatcac 31824618



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 12       cgtacccggcgcagggccacatcac 36
                |||||||||||||||||||| ||||
Sbjct: 31807468 cgtacccggcgcagggccacgtcac 31807444
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>gb|AE004846.1| Pseudomonas aeruginosa PAO1, section 407 of 529 of the complete
            genome
          Length = 10348

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 298  gctgtccgggctgctccggcgcctcggcg 326
            |||| |||||||| |||||||||||||||
Sbjct: 7597 gctgaccgggctgatccggcgcctcggcg 7569
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>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0627E03
          Length = 159861

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 12     cgtacccggcgcagggccacatcac 36
              |||||||||||||||| ||||||||
Sbjct: 120392 cgtacccggcgcaggggcacatcac 120416



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 12     cgtacccggcgcagggccacatcac 36
              |||||||||||||||||||| ||||
Sbjct: 103266 cgtacccggcgcagggccacgtcac 103242
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>dbj|AP004636.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0685B10
          Length = 148544

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 12    cgtacccggcgcagggccacatcac 36
             |||||||||||||||||||| ||||
Sbjct: 15093 cgtacccggcgcagggccacgtcac 15117
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>dbj|AP003872.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1118_A03
          Length = 109873

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 12    cgtacccggcgcagggccacatcac 36
             |||||||||||||||||||| ||||
Sbjct: 58663 cgtacccggcgcagggccacgtcac 58687
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>dbj|AK104985.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-F12, full
           insert sequence
          Length = 1677

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 12  cgtacccggcgcagggccacatcac 36
           |||||||||||||||| ||||||||
Sbjct: 123 cgtacccggcgcaggggcacatcac 147
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>dbj|AK073587.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052B15, full
           insert sequence
          Length = 1659

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 12  cgtacccggcgcagggccacatcac 36
           |||||||||||||||| ||||||||
Sbjct: 126 cgtacccggcgcaggggcacatcac 150
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>dbj|AK066301.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059M20,
          full insert sequence
          Length = 1596

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 12 cgtacccggcgcagggccacatcac 36
          |||||||||||||||||||| ||||
Sbjct: 58 cgtacccggcgcagggccacgtcac 82
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>ref|XM_469663.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 513

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 gcggtgggcggcggcgacga 174
           ||||||||||||||||||||
Sbjct: 229 gcggtgggcggcggcgacga 248
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 155      gcggtgggcggcggcgacga 174
                ||||||||||||||||||||
Sbjct: 30076721 gcggtgggcggcggcgacga 30076740
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>gb|AC096855.5| Oryza sativa chromosome 3 BAC OJ1365_D05 genomic sequence, complete
              sequence
          Length = 163972

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    gcggtgggcggcggcgacga 174
              ||||||||||||||||||||
Sbjct: 147174 gcggtgggcggcggcgacga 147155
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 286     gggcgcgcgcacgctgtccg 305
               ||||||||||||||||||||
Sbjct: 2081745 gggcgcgcgcacgctgtccg 2081726
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>emb|X92503.1|MSORIREP M.smegmatis origin of replication and genes rpmH, dnaA, dnaN, gnd,
            recF, gyrB, gyrA
          Length = 10430

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 313  ccggcgcctcggcgatcgcg 332
            ||||||||||||||||||||
Sbjct: 1349 ccggcgcctcggcgatcgcg 1330
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>emb|BX321863.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 8/10
          Length = 286850

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   cgcgcacgctgtccgggctg 310
             ||||||||||||||||||||
Sbjct: 11028 cgcgcacgctgtccgggctg 11009
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>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29
          Length = 313800

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     cgtacccggcgcagggccac 31
              ||||||||||||||||||||
Sbjct: 183526 cgtacccggcgcagggccac 183507
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>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29
          Length = 321250

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 158    gtgggcggcggcgacgagat 177
              ||||||||||||||||||||
Sbjct: 170204 gtgggcggcggcgacgagat 170185
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>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   gcggtgggcggcggcgacga 174
             ||||||||||||||||||||
Sbjct: 30880 gcggtgggcggcggcgacga 30861
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>dbj|AB087703.1| Mycobacterium smegmatis dnaA gene for DnaA, partial cds
          Length = 558

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 313 ccggcgcctcggcgatcgcg 332
           ||||||||||||||||||||
Sbjct: 435 ccggcgcctcggcgatcgcg 416
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>gb|AC074035.22| Homo sapiens Xp BAC RP11-707P20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 158710

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 337    ccccgtcacctgcgcagtgtacac 360
              |||||||||||| |||||||||||
Sbjct: 134395 ccccgtcacctgagcagtgtacac 134418
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 12      cgtacccggcgcagggccac 31
               ||||||||||||||||||||
Sbjct: 9986110 cgtacccggcgcagggccac 9986129



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 12      cgtacccggcgcagggccac 31
               ||||||||||||||||||||
Sbjct: 9931998 cgtacccggcgcagggccac 9932017
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 155      gcggtgggcggcggcgacga 174
                ||||||||||||||||||||
Sbjct: 30168293 gcggtgggcggcggcgacga 30168312
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 158     gtgggcggcggcgacgagat 177
               ||||||||||||||||||||
Sbjct: 7325126 gtgggcggcggcgacgagat 7325145



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 308     ctgctccggcgcctcggcga 327
               ||||||||||||||||||||
Sbjct: 6854664 ctgctccggcgcctcggcga 6854645
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 309     tgctccggcgcctcggcgatcgcg 332
               |||||| |||||||||||||||||
Sbjct: 1070525 tgctccagcgcctcggcgatcgcg 1070548
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>dbj|AP006050.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0021H05
          Length = 159111

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    cgtacccggcgcagggccac 31
             ||||||||||||||||||||
Sbjct: 59675 cgtacccggcgcagggccac 59694



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 12   cgtacccggcgcagggccac 31
            ||||||||||||||||||||
Sbjct: 5563 cgtacccggcgcagggccac 5582
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>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0063H02
          Length = 152326

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     cgtacccggcgcagggccac 31
              ||||||||||||||||||||
Sbjct: 128633 cgtacccggcgcagggccac 128652
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 313  ccggcgcctcggcgatcgcg 332
            ||||||||||||||||||||
Sbjct: 1060 ccggcgcctcggcgatcgcg 1041
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>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier,
             hypothetical protein, putative NAM protein, putative
             cis-zeatin O-glucosyltransferases, putative small nuclear
             ribonucleoprotein, putative cis-zeatin
             O-glucosyltransferase, putative glutathione peroxidase,
             putative copper-exporting ATPases, putative
             serine/threonine dehydratase, and putative actin
             depolymerizing factor genes, complete cds; and
             hypothetical protein gene, partial cds
          Length = 157237

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    cgtacccggcgcagggccac 31
             ||||||||||||||||||||
Sbjct: 95325 cgtacccggcgcagggccac 95344
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>gb|AC154846.2| Mus musculus BAC clone RP23-45E1 from 14, complete sequence
          Length = 250542

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 103    catatgcacccctgtctcggcctt 126
              |||||||||||||| |||||||||
Sbjct: 196783 catatgcacccctggctcggcctt 196760
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 317     cgcctcggcgatcgcgggca 336
               ||||||||||||||||||||
Sbjct: 4632744 cgcctcggcgatcgcgggca 4632725
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>gb|L13767.1|STMSEC101A Streptomyus lividans sec101 gene, 5' end primary transcript
          Length = 637

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 158 gtgggcggcggcgacgagat 177
           ||||||||||||||||||||
Sbjct: 310 gtgggcggcggcgacgagat 329


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,697,755
Number of Sequences: 3902068
Number of extensions: 1697755
Number of successful extensions: 38226
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36562
Number of HSP's gapped (non-prelim): 1660
length of query: 384
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 362
effective length of database: 17,147,199,772
effective search space: 6207286317464
effective search space used: 6207286317464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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