ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet41h11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X80265.1|HVSTRPR H.vulgare mRNA for putative structural protein 418 e-114
2ref|NM_187859.1| Oryza sativa (japonica cultivar-group), Ozsa830... 52 0.001
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
4dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
5emb|X67324.1|ZMFS18 Z.mays MFS18 mRNA 48 0.015
6gb|AY106835.1| Zea mays PCO070523 mRNA sequence 48 0.015
7gb|AY103988.1| Zea mays PCO070524 mRNA sequence 48 0.015
8gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 44 0.24
9gb|BT017349.1| Zea mays clone EL01N0323G05.c mRNA sequence 42 0.94
10dbj|BS000073.1| Pan troglodytes chromosome 22 clone:RP43-040P11,... 42 0.94
11gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome 40 3.7
12ref|XM_475933.1| Oryza sativa (japonica cultivar-group), predic... 40 3.7
13gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome 40 3.7
14gb|AC098571.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.7
15emb|AL139821.9| Human DNA sequence from clone RP11-80K21 on chro... 40 3.7
16emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genom... 40 3.7
17emb|BX294141.1| Pirellula sp. strain 1 complete genome; segment ... 40 3.7
18emb|AJ000675.1|AGAJ675 Anopheles gambiae mRNA for infection resp... 40 3.7
19gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 3.7
20gb|AC103585.2| Homo sapiens chromosome 3 clone RP11-48D9, comple... 40 3.7
21gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 3.7
22dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
23dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
24dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
25dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
26dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
27gb|AC008177.3| Homo sapiens BAC clone RP11-527A7 from 2, complet... 40 3.7
28gb|AC126471.4| Homo sapiens 12 BAC RP11-629O19 (Roswell Park Can... 40 3.7
29gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 3.7
30dbj|AP005091.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
31dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
32dbj|AP005471.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
33dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
34ref|XM_320727.2| Anopheles gambiae str. PEST ENSANGP00000020252 ... 40 3.7
35dbj|AK111310.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.7
36dbj|AK105605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.7
37emb|AJ324223.1|HSA324223 Homo sapiens genomic sequence surroundi... 40 3.7
38gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.7
39emb|AL954870.3|CNS08CD9 Oryza sativa chromosome 12, . BAC OSJNBb... 40 3.7
40dbj|AB053475.1| Oryza sativa gene for RISBZ1, complete cds 40 3.7
41emb|AL645852.23| Mouse DNA sequence from clone RP23-354K2 on chr... 40 3.7 
>emb|X80265.1|HVSTRPR H.vulgare mRNA for putative structural protein
          Length = 733

 Score =  418 bits (211), Expect = e-114
 Identities = 214/215 (99%)
 Strand = Plus / Plus

                                                                       
Query: 66  caagaacactagttcaggagctagctatcgatggagaagtctaccaagatggtggcggtg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caagaacactagttcaggagctagctatcgatggagaagtctaccaagatggtggcggtg 60

                                                                       
Query: 126 ctcgtcctcgccgtgctggccgcggcaaccggcgccgaggcgaggaacatcaagacgacg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctcgtcctcgccgtgctggccgcggcaaccggcgccgaggcgaggaacatcaagacgacg 120

                                                                       
Query: 186 gaggcggcagctgccagcaaggacgcggtcctccagccaacgacctttccgccgttcgac 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaggcggcagctgccagcaaggacgcggtcctccagccaacgacctttccgccgttcgac 180

                                              
Query: 246 cgcttaggcggcgggtcggcggcgttgggcggcgg 280
           |||||||||||||||||| ||||||||||||||||
Sbjct: 181 cgcttaggcggcgggtcgccggcgttgggcggcgg 215
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>ref|NM_187859.1| Oryza sativa (japonica cultivar-group), Ozsa8303 predicted mRNA
          Length = 366

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 76/92 (82%), Gaps = 3/92 (3%)
 Strand = Plus / Plus

                                                                       
Query: 162 gaggcgaggaacatcaagacgacggaggcggcagctgcc---agcaaggacgcggtcctc 218
           |||||||||||||||||| || ||| |||||| || ||    ||||||||| ||||  | 
Sbjct: 67  gaggcgaggaacatcaaggcggcggcggcggcggcggcggagagcaaggacacggtggtg 126

                                           
Query: 219 cagccaacgacctttccgccgttcgaccgctt 250
           ||||| ||||| || |||||||||||||||||
Sbjct: 127 cagccgacgacgttcccgccgttcgaccgctt 158
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 76/92 (82%), Gaps = 3/92 (3%)
 Strand = Plus / Minus

                                                                           
Query: 162     gaggcgaggaacatcaagacgacggaggcggcagctgcc---agcaaggacgcggtcctc 218
               |||||||||||||||||| || ||| |||||| || ||    ||||||||| ||||  | 
Sbjct: 8305410 gaggcgaggaacatcaaggcggcggcggcggcggcggcggagagcaaggacacggtggtg 8305351

                                               
Query: 219     cagccaacgacctttccgccgttcgaccgctt 250
               ||||| ||||| || |||||||||||||||||
Sbjct: 8305350 cagccgacgacgttcccgccgttcgaccgctt 8305319
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>dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0434D08
          Length = 161266

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 76/92 (82%), Gaps = 3/92 (3%)
 Strand = Plus / Minus

                                                                         
Query: 162   gaggcgaggaacatcaagacgacggaggcggcagctgcc---agcaaggacgcggtcctc 218
             |||||||||||||||||| || ||| |||||| || ||    ||||||||| ||||  | 
Sbjct: 99341 gaggcgaggaacatcaaggcggcggcggcggcggcggcggagagcaaggacacggtggtg 99282

                                             
Query: 219   cagccaacgacctttccgccgttcgaccgctt 250
             ||||| ||||| || |||||||||||||||||
Sbjct: 99281 cagccgacgacgttcccgccgttcgaccgctt 99250
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>emb|X67324.1|ZMFS18 Z.mays MFS18 mRNA
          Length = 969

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 158 cgccgaggcgaggaacatcaagac 181
           ||||||||||||||||||||||||
Sbjct: 217 cgccgaggcgaggaacatcaagac 240
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>gb|AY106835.1| Zea mays PCO070523 mRNA sequence
          Length = 727

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 158 cgccgaggcgaggaacatcaagacgacg 185
           ||||||||| ||||||||||||||||||
Sbjct: 144 cgccgaggcaaggaacatcaagacgacg 171
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>gb|AY103988.1| Zea mays PCO070524 mRNA sequence
          Length = 1061

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 158 cgccgaggcgaggaacatcaagac 181
           ||||||||||||||||||||||||
Sbjct: 234 cgccgaggcgaggaacatcaagac 257
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 146     cgcggcaaccggcgccgaggcgagga 171
               ||||||||| ||||||||||||||||
Sbjct: 2383597 cgcggcaacgggcgccgaggcgagga 2383622
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>gb|BT017349.1| Zea mays clone EL01N0323G05.c mRNA sequence
          Length = 773

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 161 cgaggcgaggaacatcaagac 181
           |||||||||||||||||||||
Sbjct: 64  cgaggcgaggaacatcaagac 84
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>dbj|BS000073.1| Pan troglodytes chromosome 22 clone:RP43-040P11, map 22, complete
              sequences
          Length = 148593

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 11     gagctagaagcaacaagcaag 31
              |||||||||||||||||||||
Sbjct: 101675 gagctagaagcaacaagcaag 101695
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>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 231    tttccgccgttcgaccgctt 250
              ||||||||||||||||||||
Sbjct: 190157 tttccgccgttcgaccgctt 190138
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>ref|XM_475933.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1719

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 122 ggtgctcgtcctcgccgtgctggccgcg 149
           ||||||||||||||||| ||| ||||||
Sbjct: 237 ggtgctcgtcctcgccgcgctcgccgcg 264
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>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 231    tttccgccgttcgaccgctt 250
              ||||||||||||||||||||
Sbjct: 189964 tttccgccgttcgaccgctt 189945
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>gb|AC098571.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_B10,
             complete sequence
          Length = 127304

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 122   ggtgctcgtcctcgccgtgctggccgcg 149
             ||||||||||||||||| ||| ||||||
Sbjct: 44947 ggtgctcgtcctcgccgcgctcgccgcg 44920
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>emb|AL139821.9| Human DNA sequence from clone RP11-80K21 on chromosome 10 Contains
            two novel genes including FLJ37439, the 5' end of a novel
            gene (KIAA1136) (FLJ37801) and a CpG island, complete
            sequence
          Length = 163680

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 21   caacaagcaagcaaagcaag 40
            ||||||||||||||||||||
Sbjct: 2577 caacaagcaagcaaagcaag 2558
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>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16
          Length = 348580

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 120  gcggtgctcgtcctcgccgtgctg 143
            |||||||||| |||||||||||||
Sbjct: 4436 gcggtgctcggcctcgccgtgctg 4413
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>emb|BX294141.1| Pirellula sp. strain 1 complete genome; segment 9/24
          Length = 299350

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     gcaacaagcaagcaaagcaa 39
              ||||||||||||||||||||
Sbjct: 299037 gcaacaagcaagcaaagcaa 299056
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>emb|AJ000675.1|AGAJ675 Anopheles gambiae mRNA for infection responsive serine protease
           like protein
          Length = 1987

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 252 ggcggcgggtcggcggcgtt 271
           ||||||||||||||||||||
Sbjct: 926 ggcggcgggtcggcggcgtt 907
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 128     cgtcctcgccgtgctggccg 147
               ||||||||||||||||||||
Sbjct: 1741007 cgtcctcgccgtgctggccg 1741026
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>gb|AC103585.2| Homo sapiens chromosome 3 clone RP11-48D9, complete sequence
          Length = 184596

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    acaagcaagcaaagcaagca 42
             ||||||||||||||||||||
Sbjct: 78503 acaagcaagcaaagcaagca 78522
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 132     ctcgccgtgctggccgcggc 151
               ||||||||||||||||||||
Sbjct: 2261339 ctcgccgtgctggccgcggc 2261358
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 24      caagcaagcaaagcaagcagccac 47
               |||||||||||||||||| |||||
Sbjct: 9921558 caagcaagcaaagcaagcggccac 9921535
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 260      gtcggcggcgttgggcggcg 279
                ||||||||||||||||||||
Sbjct: 10307094 gtcggcggcgttgggcggcg 10307075
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 25      aagcaagcaaagcaagcagc 44
               ||||||||||||||||||||
Sbjct: 4358159 aagcaagcaaagcaagcagc 4358178
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 253      gcggcgggtcggcggcgttg 272
                ||||||||||||||||||||
Sbjct: 21606851 gcggcgggtcggcggcgttg 21606832
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 122      ggtgctcgtcctcgccgtgctggccgcg 149
                ||||||||||||||||| ||| ||||||
Sbjct: 28517254 ggtgctcgtcctcgccgcgctcgccgcg 28517227
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>gb|AC008177.3| Homo sapiens BAC clone RP11-527A7 from 2, complete sequence
          Length = 152996

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    gccactcacacactagccag 62
             ||||||||||||||||||||
Sbjct: 14110 gccactcacacactagccag 14091
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>gb|AC126471.4| Homo sapiens 12 BAC RP11-629O19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 199945

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    aagtctaccaagatggtggc 121
              ||||||||||||||||||||
Sbjct: 110034 aagtctaccaagatggtggc 110053
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 125     gctcgtcctcgccgtgctggccgc 148
               |||||||||||||| |||||||||
Sbjct: 4346568 gctcgtcctcgccgcgctggccgc 4346591



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 130     tcctcgccgtgctggccgcg 149
               ||||||||||||||||||||
Sbjct: 3083343 tcctcgccgtgctggccgcg 3083324
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>dbj|AP005091.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1104_G11
          Length = 140093

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   gtcggcggcgttgggcggcg 279
             ||||||||||||||||||||
Sbjct: 14799 gtcggcggcgttgggcggcg 14780
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>dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0567G03
          Length = 196834

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 253    gcggcgggtcggcggcgttg 272
              ||||||||||||||||||||
Sbjct: 164035 gcggcgggtcggcggcgttg 164016
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>dbj|AP005471.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBa0062E01
          Length = 161804

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 253  gcggcgggtcggcggcgttg 272
            ||||||||||||||||||||
Sbjct: 5782 gcggcgggtcggcggcgttg 5763
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>dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1014_E09
          Length = 184624

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     aagcaagcaaagcaagcagc 44
              ||||||||||||||||||||
Sbjct: 179213 aagcaagcaaagcaagcagc 179232
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>ref|XM_320727.2| Anopheles gambiae str. PEST ENSANGP00000020252
           (ENSANGG00000017763), partial mRNA
          Length = 1722

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 252 ggcggcgggtcggcggcgtt 271
           ||||||||||||||||||||
Sbjct: 830 ggcggcgggtcggcggcgtt 811
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>dbj|AK111310.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-C02, full
           insert sequence
          Length = 826

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 24  caagcaagcaaagcaagcagccac 47
           |||||||||||||||||| |||||
Sbjct: 152 caagcaagcaaagcaagcggccac 175
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>dbj|AK105605.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A11, full
            insert sequence
          Length = 2191

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 253  gcggcgggtcggcggcgttg 272
            ||||||||||||||||||||
Sbjct: 1730 gcggcgggtcggcggcgttg 1711
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>emb|AJ324223.1|HSA324223 Homo sapiens genomic sequence surrounding NotI site, clone
           NL1-ZF16C
          Length = 761

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 115 tggtggcggtgctcgtcctc 134
           ||||||||||||||||||||
Sbjct: 107 tggtggcggtgctcgtcctc 126
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 24      caagcaagcaaagcaagcagccac 47
               |||||||||||||||||| |||||
Sbjct: 9921443 caagcaagcaaagcaagcggccac 9921420
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>emb|AL954870.3|CNS08CD9 Oryza sativa chromosome 12, . BAC OSJNBb0112E17 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 140806

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 24    caagcaagcaaagcaagcagccac 47
             |||||||||||||||||| |||||
Sbjct: 10912 caagcaagcaaagcaagcggccac 10935
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>dbj|AB053475.1| Oryza sativa gene for RISBZ1, complete cds
          Length = 4442

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 25  aagcaagcaaagcaagcagc 44
           ||||||||||||||||||||
Sbjct: 666 aagcaagcaaagcaagcagc 647
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>emb|AL645852.23| Mouse DNA sequence from clone RP23-354K2 on chromosome 11, complete
             sequence
          Length = 158089

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    caagcaagcaaagcaagcag 43
             ||||||||||||||||||||
Sbjct: 51481 caagcaagcaaagcaagcag 51462


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,085,500
Number of Sequences: 3902068
Number of extensions: 2085500
Number of successful extensions: 47885
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47245
Number of HSP's gapped (non-prelim): 640
length of query: 284
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 262
effective length of database: 17,147,199,772
effective search space: 4492566340264
effective search space used: 4492566340264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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