ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet41h09 |
|---|---|
| Clone Library Name | barley_pub |
>INVO_TARBA (P24711) Involucrin| Length = 387 Score = 32.0 bits (71), Expect = 0.40 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +2 Query: 50 NTQSQDRSRATPSPSPCQETHTQPVLSKIPQP 145 NTQ + TPSP+PCQ+ ++ + K P P Sbjct: 28 NTQQDQMKQPTPSPAPCQKGPSELPVEKHPAP 59
>ZDHC8_PANTR (Q2THX0) Probable palmitoyltransferase ZDHHC8 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 8) (DHHC-8) Length = 765 Score = 30.8 bits (68), Expect = 0.89 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Frame = +2 Query: 5 STWPSRVSQTPRA*HNT-QSQDRSRATPSPSPCQETHTQPVLSKIPQPP 148 S+ S VS+ PR ++ Q+ S P P P +H P +P PP Sbjct: 629 SSLSSSVSRAPRTSSSSLQADQASSNAPGPRPSSGSHRSPARQGLPSPP 677
>ZDHC8_HUMAN (Q9ULC8) Probable palmitoyltransferase ZDHHC8 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 8) (DHHC-8) (Zinc finger protein 378) Length = 765 Score = 30.8 bits (68), Expect = 0.89 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Frame = +2 Query: 5 STWPSRVSQTPRA*HNT-QSQDRSRATPSPSPCQETHTQPVLSKIPQPP 148 S+ S VS+ PR ++ Q+ S P P P +H P +P PP Sbjct: 629 SSLSSSVSRAPRTSSSSLQADQASSNAPGPRPSSGSHRSPARQGLPSPP 677
>Y1567_MYCBO (P0A5T3) Hypothetical RNA pseudouridine synthase Mb1567 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 308 Score = 30.4 bits (67), Expect = 1.2 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = +1 Query: 7 HVAIPGKPDPESVTQHTVTGQEPGHSLSFSVPRN 108 H + G PDP S T G+ GH F++ +N Sbjct: 172 HALVQGHPDPSSGTIDAPIGRHRGHEWKFAITKN 205
>Y1540_MYCTU (P0A5T2) Hypothetical RNA pseudouridine synthase Rv1540/MT1592 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 308 Score = 30.4 bits (67), Expect = 1.2 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = +1 Query: 7 HVAIPGKPDPESVTQHTVTGQEPGHSLSFSVPRN 108 H + G PDP S T G+ GH F++ +N Sbjct: 172 HALVQGHPDPSSGTIDAPIGRHRGHEWKFAITKN 205
>YJI3_YEAST (P47030) Hypothetical 68.8 kDa protein in EXO70-ARP4 intergenic| region Length = 604 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 Query: 25 KPDPESVTQHTVTGQEPGHSLSFSVPRNPHPT 120 +P+P S+ PGHS +FSVP P T Sbjct: 71 QPEPRSINHQYSRETLPGHSEAFSVPTTPLQT 102
>V70K_EPMV (P20129) 70 kDa protein| Length = 649 Score = 29.3 bits (64), Expect = 2.6 Identities = 20/49 (40%), Positives = 25/49 (51%) Frame = +2 Query: 2 FSTWPSRVSQTPRA*HNTQSQDRSRATPSPSPCQETHTQPVLSKIPQPP 148 FS P V T A + TQS +RS SP+P H LS++P PP Sbjct: 440 FSVSPLGVLTTAFALNPTQSAERSCDPESPTPTL-GHKTTSLSRLPLPP 487
>CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48)| Length = 2441 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = +1 Query: 10 VAIPGKPDPESVTQHTVTGQE-----PGHSLSFSVPRNPHPTRPLQN 135 + PG+P+P S QH ++GQ PG ++ S+ P+Q+ Sbjct: 2304 IGSPGQPNPMSPQQHMLSGQPQASHLPGQQIATSLSNQVRSPAPVQS 2350
>CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)| Length = 2442 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = +1 Query: 10 VAIPGKPDPESVTQHTVTGQE-----PGHSLSFSVPRNPHPTRPLQN 135 + PG+P+P S QH ++GQ PG ++ S+ P+Q+ Sbjct: 2305 IGSPGQPNPMSPQQHMLSGQPQASHLPGQQIATSLSNQVRSPAPVQS 2351
>AFF1_HUMAN (P51825) AF4/FMR2 family member 1 (AF-4 protein) (Proto-oncogene| AF4) (FEL protein) Length = 1210 Score = 28.5 bits (62), Expect = 4.4 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = +2 Query: 17 SRVSQTPRA*HNTQSQDRSRATPSPSPCQETHTQPVLSKIPQPP 148 SR + P +T+ R TP P T +LS+IPQPP Sbjct: 734 SRKDRLPLPLRDTKLLSPLRDTPPPQSLMVKITLDLLSRIPQPP 777
>PNTA_HAEIN (P43842) NAD(P) transhydrogenase subunit alpha (EC 1.6.1.2)| (Pyridine nucleotide transhydrogenase subunit alpha) (Nicotinamide nucleotide transhydrogenase subunit alpha) Length = 512 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +1 Query: 1 ILHVAIPGKPDPESVTQHTVTGQEPG 78 I AIPGKP P +T+ V +PG Sbjct: 253 ITTAAIPGKPAPRLITKEMVDSMKPG 278
>YHFX_ECOLI (P45550) Hypothetical protein yhfX| Length = 387 Score = 28.1 bits (61), Expect = 5.8 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +1 Query: 43 VTQHTVTGQEPGHSLSFSVPRNPHPTRP 126 + Q+ VT EPGH+L+ ++P N +P Sbjct: 245 LAQYGVTHAEPGHALTGTIPANQQGDQP 272
>BSN_MOUSE (O88737) Bassoon protein| Length = 3941 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +1 Query: 19 PGKPDPESVTQHTVTGQEPGHSLSFSVPRNPHPTRPL 129 PGK P + + + Q P +LS +PR+P P P+ Sbjct: 1497 PGKLGPRATAEFST--QTPSLTLSSDIPRSPGPPSPM 1531
>ZDHC8_MOUSE (Q5Y5T5) Probable palmitoyltransferase ZDHHC8 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 8) (DHHC-8) Length = 762 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Frame = +2 Query: 5 STWPSRVSQTPRA*HNT-QSQDRSRATPSPSPCQETHTQPVLSKIPQPP 148 S+ S +S+ PR ++ Q+ + P P P +H P +P PP Sbjct: 626 SSLSSSMSRAPRTSSSSLQADQANNNAPGPRPGSGSHRSPARQGLPSPP 674
>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of| white-apricot homolog 2) Length = 659 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 3/29 (10%) Frame = +2 Query: 53 TQSQDRSRA---TPSPSPCQETHTQPVLS 130 +QS+ RSR+ +PSPSP +E T+P S Sbjct: 504 SQSRSRSRSRSQSPSPSPAREKLTRPAAS 532
>PNTAA_RHORU (P0C186) NAD(P) transhydrogenase subunit alpha part 1 (EC 1.6.1.2)| (Pyridine nucleotide transhydrogenase subunit alpha 1) (Nicotinamide nucleotide transhydrogenase subunit alpha 1) (Proton-translocating transhydrogenase component 1) (dI) Length = 384 Score = 27.7 bits (60), Expect = 7.5 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +1 Query: 16 IPGKPDPESVTQHTVTGQEPG 78 IPGKP P +T+ VT +PG Sbjct: 267 IPGKPAPVLITEEMVTKMKPG 287
>PNTAA_RHORT (Q2RSB2) NAD(P) transhydrogenase subunit alpha part 1 (EC 1.6.1.2)| (Pyridine nucleotide transhydrogenase subunit alpha 1) (Nicotinamide nucleotide transhydrogenase subunit alpha 1) (Proton-translocating transhydrogenase component 1) (dI) Length = 384 Score = 27.7 bits (60), Expect = 7.5 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +1 Query: 16 IPGKPDPESVTQHTVTGQEPG 78 IPGKP P +T+ VT +PG Sbjct: 267 IPGKPAPVLITEEMVTKMKPG 287
>INVO_PIG (P18175) Involucrin| Length = 347 Score = 27.3 bits (59), Expect = 9.9 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%) Frame = +2 Query: 8 TWPSRVSQTP----RA*HNTQSQDRSRATPSPSPCQETHTQPVLSKIP 139 T P +SQ P +TQ + +ATP P+PCQ+ +LS++P Sbjct: 10 TLPPALSQEPLKPVSPPADTQQEQVKQATPLPAPCQK-----MLSELP 52
>CSP_PLABA (P23093) Circumsporozoite protein precursor (CS)| Length = 347 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = +2 Query: 35 PRA*HNTQSQDRSRATPSPSPCQETHTQPVLSKIPQP 145 P+ +N Q Q R + P P P + QP PQP Sbjct: 208 PQGNNNPQPQPRPQPQPQPQPQPQPQPQPQPRPQPQP 244
>SPRR1_RABIT (P35324) Cornifin alpha (Small proline-rich protein I) (SPR-I)| Length = 126 Score = 27.3 bits (59), Expect = 9.9 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +2 Query: 89 PSPCQETHTQPVLSKIPQP 145 P PCQ +P SK+PQP Sbjct: 94 PEPCQPKVPEPCQSKVPQP 112
>UBP51_HUMAN (Q70EK9) Ubiquitin carboxyl-terminal hydrolase 51 (EC 3.1.2.15)| (Ubiquitin thioesterase 51) (Ubiquitin-specific-processing protease 51) (Deubiquitinating enzyme 51) Length = 711 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +2 Query: 68 RSRATPSPSPCQETHTQPVLSKIPQPPA 151 R + P P P + +QP LS P PPA Sbjct: 101 RRKPRPRPQPRARSRSQPGLSAPPPPPA 128
>JD2AB_XENLA (Q5HZN1) JmjC domain-containing histone demethylation protein 2A-B| (EC 1.14.11.-) (Jumonji domain-containing protein 1A-B) Length = 1334 Score = 27.3 bits (59), Expect = 9.9 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = +2 Query: 77 ATPSPSPCQETHTQPVLSKIPQPPA 151 +TP P P + QP + +P PPA Sbjct: 796 STPEPEPIKSLLAQPNVCTVPDPPA 820
>PER1_RAT (Q8CHI5) Period circadian protein 1 (rPER1) (Fragment)| Length = 1244 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = +2 Query: 62 QDRSRATPSP-SPCQETHTQPVLSKIPQPP 148 + R TP P +PC +H PV S P PP Sbjct: 837 RSRHHQTPRPETPCYVSHPSPVPSSGPWPP 866
>CEA20_HUMAN (Q6UY09) Carcinoembryonic antigen-related cell adhesion molecule 20| precursor Length = 585 Score = 27.3 bits (59), Expect = 9.9 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = +1 Query: 61 TGQEPGHSLSFSVPRNPHPTRP 126 T ++P H S +P+ HPT P Sbjct: 481 TTEDPSHETSQPIPKEEHPTEP 502
>CSP_PLABE (P06915) Circumsporozoite protein precursor (CS)| Length = 339 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = +2 Query: 35 PRA*HNTQSQDRSRATPSPSPCQETHTQPVLSKIPQP 145 P+ +N Q Q R + P P P + QP PQP Sbjct: 200 PQGNNNPQPQPRPQPQPQPQPQPQPQPQPQPRPQPQP 236 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.311 0.129 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,736,769 Number of Sequences: 219361 Number of extensions: 583461 Number of successful extensions: 1978 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 1759 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1957 length of database: 80,573,946 effective HSP length: 82 effective length of database: 62,586,344 effective search space used: 1502072256 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
