ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet41g04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192785.1| Oryza sativa (japonica cultivar-group), predic... 119 3e-24
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 119 3e-24
3dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic D... 119 3e-24
4dbj|AK061211.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 3e-24
5dbj|AK069226.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 1e-20
6ref|NM_192784.1| Oryza sativa (japonica cultivar-group), predic... 82 7e-13
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.003
8emb|AL662981.3|OSJN00182 Oryza sativa genomic DNA, chromosome 4,... 50 0.003
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.16
10gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.16
11gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare str... 44 0.16
12dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.16
13gb|AC163693.3| Mus musculus BAC clone RP24-70O15 from chromosome... 44 0.16
14gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 42 0.61
15ref|NM_101344.2| Arabidopsis thaliana SDS (SOLO DANCERS); cyclin... 40 2.4
16gb|AC167718.4| Culex pipiens quinquefasciatus, clone Culex pipie... 40 2.4
17emb|CT009696.9| Mouse DNA sequence from clone RP23-11B13 on chro... 40 2.4
18emb|AL390882.12| Human DNA sequence from clone RP11-113D19 on ch... 40 2.4
19gb|AC167662.6| Culex pipiens quinquefasciatus, clone Culex pipie... 40 2.4
20emb|AL662879.5|HS279F22 Homo sapiens chromosome 9 BAC RP11-279F2... 40 2.4
21emb|AJ457977.1|ATH457977 Arabidopsis thaliana mRNA for cyclin-li... 40 2.4
22emb|CR937025.1|PT027O15 Pan troglodytes chromosome 11 BAC PTB-02... 40 2.4
23gb|AY072040.1| Expression vector pANT1202, complete sequence 40 2.4
24gb|AY072039.1| Expression vector pANT1201, complete sequence 40 2.4
25gb|AY072038.1| Expression vector pANT1200, complete sequence 40 2.4
26gb|AY072037.1| Expression vector pANT849, complete sequence 40 2.4
27gb|AC109602.6| Oryza sativa chromosome 3 BAC OSJNBa0087M10 genom... 40 2.4
28gb|AC006917.6|AC006917 Genomic sequence for Arabidopsis thaliana... 40 2.4
29emb|AJ414669.1|PI414669 Cloning vector pIJ6021 40 2.4
30gb|DQ309424.1| Expression vector JN100, complete sequence 40 2.4
31gb|M21778.1|PIJ101CG Plasmid pIJ101 (from S.lividans), complete ... 40 2.4
32gb|AC132886.18| Mus musculus chromosome 13, clone RP24-267I21, c... 38 9.6
33gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.6
34gb|AC123998.7| Mus musculus chromosome 5, clone RP24-421H18, com... 38 9.6
35ref|XM_324005.1| Neurospora crassa OR74A predicted protein (NCU0... 38 9.6
36gb|BC051338.1| Homo sapiens endothelial PAS domain protein 1, mR... 38 9.6
37ref|XM_954100.1| Neurospora crassa OR74A hypothetical protein (N... 38 9.6
38gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 38 9.6
39gb|AC123526.2| Oryza sativa japonica cultivar-group chromosome 1... 38 9.6
40gb|AC133648.3| Mus musculus BAC clone RP23-291B1 from chromosome... 38 9.6
41emb|CR974584.10| Mouse DNA sequence from clone RP23-99K9 on chro... 38 9.6
42gb|AC122012.3| Mus musculus BAC clone RP24-353N4 from 5, complet... 38 9.6
43ref|NM_001430.3| Homo sapiens endothelial PAS domain protein 1 (... 38 9.6
44gb|AC102847.3| Mus musculus, clone RP24-406I1, complete sequence 38 9.6
45gb|AC162874.2| Mus musculus chromosome 5, clone RP24-289G19, com... 38 9.6
46emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome 38 9.6
47emb|AL807371.1|NC5F3 Neurospora crassa DNA linkage group V cosmi... 38 9.6
48gb|AC090097.5| Homo sapiens chromosome 8, clone RP11-369C6, comp... 38 9.6
49gb|AC092472.3| Homo sapiens chromosome 8 clone RP1-96P7 map map ... 38 9.6
50dbj|AK123845.1| Homo sapiens cDNA FLJ41851 fis, clone NT2RI30039... 38 9.6
51dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 38 9.6
52gb|AC140344.3| Mus musculus BAC clone RP23-237M10 from chromosom... 38 9.6
53dbj|AK020153.1| Mus musculus 12 days embryo male wolffian duct i... 38 9.6
54gb|AE006470.1| Chlorobium tepidum TLS, complete genome 38 9.6
55dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.6
56dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.6
57dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.6
58dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.6
59gb|AC012511.7| Homo sapiens BAC clone RP11-548P2 from 2, complet... 38 9.6
60gb|AC016912.7| Homo sapiens BAC clone RP11-480A6 from 2, complet... 38 9.6
61dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 38 9.6
62dbj|AP005971.2| Oryza sativa (japonica cultivar-group) genomic D... 38 9.6
63dbj|AK120954.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 9.6
64gb|AC107453.14| Mus musculus chromosome 15, clone RP23-315F3, co... 38 9.6
65gb|AF063006.1|AF063006 Mus musculus SMAD5 (Smad5) mRNA, complete... 38 9.6
66gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 9.6
67gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 9.6
68emb|AL928783.4|CNS08CCD Oryza sativa chromosome 12, . BAC OSJNBa... 38 9.6
69emb|AL732535.4|CNS08C9A Oryza sativa chromosome 12, . BAC OSJNBa... 38 9.6
70gb|AC160642.2| Gallus gallus BAC clone CH261-121M12 from chromos... 38 9.6 
>ref|NM_192785.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1275

 Score =  119 bits (60), Expect = 3e-24
 Identities = 81/88 (92%)
 Strand = Plus / Plus

                                                                       
Query: 106 ccgtcaccaagtcgccgccggcgctcgtccctccggcggggccgaccccgggaggcacgc 165
           ||||||||||||||||||||||||| || || ||||||||||| |||||||| ||| | |
Sbjct: 14  ccgtcaccaagtcgccgccggcgctggtgcccccggcggggcccaccccgggcggctccc 73

                                       
Query: 166 tcccgctctcctccatcgacaagaccgc 193
           ||||||||||||||||||||||||||||
Sbjct: 74  tcccgctctcctccatcgacaagaccgc 101
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  119 bits (60), Expect = 3e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                            
Query: 106      ccgtcaccaagtcgccgccggcgctcgtccctccggcggggccgaccccgggaggcacgc 165
                ||||||||||||||||||||||||| || || ||||||||||| |||||||| ||| | |
Sbjct: 24396676 ccgtcaccaagtcgccgccggcgctggtgcccccggcggggcccaccccgggcggctccc 24396617

                                            
Query: 166      tcccgctctcctccatcgacaagaccgc 193
                ||||||||||||||||||||||||||||
Sbjct: 24396616 tcccgctctcctccatcgacaagaccgc 24396589



 Score = 81.8 bits (41), Expect = 7e-13
 Identities = 80/93 (86%)
 Strand = Plus / Minus

                                                                            
Query: 101      gcccaccgtcaccaagtcgccgccggcgctcgtccctccggcggggccgaccccgggagg 160
                |||||||||| |||||||| |||||| ||| ||||| || |||||||| |||||| | ||
Sbjct: 24392814 gcccaccgtctccaagtcggcgccggagctggtcccgcccgcggggcccaccccgcgcgg 24392755

                                                 
Query: 161      cacgctcccgctctcctccatcgacaagaccgc 193
                | |||| ||||| || |||||||||||||||||
Sbjct: 24392754 cgcgctgccgctgtcgtccatcgacaagaccgc 24392722
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>dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0410E01
          Length = 166753

 Score =  119 bits (60), Expect = 3e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                          
Query: 106    ccgtcaccaagtcgccgccggcgctcgtccctccggcggggccgaccccgggaggcacgc 165
              ||||||||||||||||||||||||| || || ||||||||||| |||||||| ||| | |
Sbjct: 142580 ccgtcaccaagtcgccgccggcgctggtgcccccggcggggcccaccccgggcggctccc 142521

                                          
Query: 166    tcccgctctcctccatcgacaagaccgc 193
              ||||||||||||||||||||||||||||
Sbjct: 142520 tcccgctctcctccatcgacaagaccgc 142493



 Score = 81.8 bits (41), Expect = 7e-13
 Identities = 80/93 (86%)
 Strand = Plus / Minus

                                                                          
Query: 101    gcccaccgtcaccaagtcgccgccggcgctcgtccctccggcggggccgaccccgggagg 160
              |||||||||| |||||||| |||||| ||| ||||| || |||||||| |||||| | ||
Sbjct: 138718 gcccaccgtctccaagtcggcgccggagctggtcccgcccgcggggcccaccccgcgcgg 138659

                                               
Query: 161    cacgctcccgctctcctccatcgacaagaccgc 193
              | |||| ||||| || |||||||||||||||||
Sbjct: 138658 cgcgctgccgctgtcgtccatcgacaagaccgc 138626
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>dbj|AK061211.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-D05, full
           insert sequence
          Length = 1556

 Score =  119 bits (60), Expect = 3e-24
 Identities = 81/88 (92%)
 Strand = Plus / Plus

                                                                       
Query: 106 ccgtcaccaagtcgccgccggcgctcgtccctccggcggggccgaccccgggaggcacgc 165
           ||||||||||||||||||||||||| || || ||||||||||| |||||||| ||| | |
Sbjct: 55  ccgtcaccaagtcgccgccggcgctggtgcccccggcggggcccaccccgggcggctccc 114

                                       
Query: 166 tcccgctctcctccatcgacaagaccgc 193
           ||||||||||||||||||||||||||||
Sbjct: 115 tcccgctctcctccatcgacaagaccgc 142
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>dbj|AK069226.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014K19, full
           insert sequence
          Length = 1562

 Score =  107 bits (54), Expect = 1e-20
 Identities = 78/86 (90%)
 Strand = Plus / Plus

                                                                       
Query: 108 gtcaccaagtcgccgccggcgctcgtccctccggcggggccgaccccgggaggcacgctc 167
           ||||||||||||||||||| ||| || || ||||||||||| |||||||| ||| | |||
Sbjct: 91  gtcaccaagtcgccgccggtgctggtgcccccggcggggcccaccccgggcggctccctc 150

                                     
Query: 168 ccgctctcctccatcgacaagaccgc 193
           ||||||||||||||||||||||||||
Sbjct: 151 ccgctctcctccatcgacaagaccgc 176
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>ref|NM_192784.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1341

 Score = 81.8 bits (41), Expect = 7e-13
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                       
Query: 101 gcccaccgtcaccaagtcgccgccggcgctcgtccctccggcggggccgaccccgggagg 160
           |||||||||| |||||||| |||||| ||| ||||| || |||||||| |||||| | ||
Sbjct: 54  gcccaccgtctccaagtcggcgccggagctggtcccgcccgcggggcccaccccgcgcgg 113

                                            
Query: 161 cacgctcccgctctcctccatcgacaagaccgc 193
           | |||| ||||| || |||||||||||||||||
Sbjct: 114 cgcgctgccgctgtcgtccatcgacaagaccgc 146
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                                 
Query: 139      cggcggggccgaccccgggaggcacgctcccgctctcctccatcgacaa 187
                |||||||||| |||||||| ||| | ||| |||| ||||||||||||||
Sbjct: 29800067 cggcggggcccaccccgggcggctccctctcgctatcctccatcgacaa 29800019
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>emb|AL662981.3|OSJN00182 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06,
             complete sequence
          Length = 178552

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                              
Query: 139   cggcggggccgaccccgggaggcacgctcccgctctcctccatcgacaa 187
             |||||||||| |||||||| ||| | ||| |||| ||||||||||||||
Sbjct: 80993 cggcggggcccaccccgggcggctccctctcgctatcctccatcgacaa 80945
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 168      ccgctctcctccatcgacaagaccgc 193
                ||||| ||||||||||||||||||||
Sbjct: 10455380 ccgctatcctccatcgacaagaccgc 10455355



 Score = 40.1 bits (20), Expect = 2.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 73       acccaatcgctccctcgaccatggccgc 100
                |||| ||||||||||||||||| |||||
Sbjct: 22053391 accccatcgctccctcgaccatcgccgc 22053364
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>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039F10,
              complete sequence
          Length = 139714

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 168    ccgctctcctccatcgacaagaccgc 193
              ||||| ||||||||||||||||||||
Sbjct: 111933 ccgctatcctccatcgacaagaccgc 111908
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>gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0036G02, from chromosome 3, complete sequence
          Length = 153308

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 168   ccgctctcctccatcgacaagaccgc 193
             ||||| ||||||||||||||||||||
Sbjct: 11193 ccgctatcctccatcgacaagaccgc 11168
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 168      ccgctctcctccatcgacaagaccgc 193
                ||||| ||||||||||||||||||||
Sbjct: 10453481 ccgctatcctccatcgacaagaccgc 10453456



 Score = 40.1 bits (20), Expect = 2.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 73       acccaatcgctccctcgaccatggccgc 100
                |||| ||||||||||||||||| |||||
Sbjct: 22046420 accccatcgctccctcgaccatcgccgc 22046393
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>gb|AC163693.3| Mus musculus BAC clone RP24-70O15 from chromosome 13, complete sequence
          Length = 219890

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 12    ccaccagcacaaggagaaggag 33
             ||||||||||||||||||||||
Sbjct: 94889 ccaccagcacaaggagaaggag 94910
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 42.1 bits (21), Expect = 0.61
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 42      accaccggccgggacgggatc 62
               |||||||||||||||||||||
Sbjct: 1370059 accaccggccgggacgggatc 1370079
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>ref|NM_101344.2| Arabidopsis thaliana SDS (SOLO DANCERS); cyclin-dependent protein
           kinase AT1G14750 (SDS) mRNA, complete cds
          Length = 2101

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 19  cacaaggagaaggagggaga 38
           ||||||||||||||||||||
Sbjct: 449 cacaaggagaaggagggaga 468
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>gb|AC167718.4| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940130D9, complete sequence
          Length = 117683

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    gcaaccaccggccgggacgg 58
             ||||||||||||||||||||
Sbjct: 60056 gcaaccaccggccgggacgg 60075
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>emb|CT009696.9| Mouse DNA sequence from clone RP23-11B13 on chromosome 9, complete
             sequence
          Length = 196093

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    gcacaaggagaaggagggag 37
             ||||||||||||||||||||
Sbjct: 80945 gcacaaggagaaggagggag 80964
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>emb|AL390882.12| Human DNA sequence from clone RP11-113D19 on chromosome 9p21.2-22.3
              Contains the IFNA21 gene for interferon, alpha 21, the
              IFNW1 gene for interferon, omega 1, an interferon, omega 1
              (IFNW1) pseudogene, the IFNB1 gene for interferon, beta 1,
              fibroblast, an interferon, beta 1, fibroblast (IFNB1)
              pseudogene and a novel gene, possible otholog of mouse
              RIKEN cDNA 4933428I03 gene, complete sequence
          Length = 162064

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     aaggagaaggagggagagca 41
              ||||||||||||||||||||
Sbjct: 110153 aaggagaaggagggagagca 110134
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>gb|AC167662.6| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940141D9, complete sequence
          Length = 117679

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    gcaaccaccggccgggacgg 58
             ||||||||||||||||||||
Sbjct: 57626 gcaaccaccggccgggacgg 57607
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>emb|AL662879.5|HS279F22 Homo sapiens chromosome 9 BAC RP11-279F22, complete sequence
          Length = 159300

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    aaggagaaggagggagagca 41
             ||||||||||||||||||||
Sbjct: 18086 aaggagaaggagggagagca 18067
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>emb|AJ457977.1|ATH457977 Arabidopsis thaliana mRNA for cyclin-like protein (sds gene)
          Length = 2144

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 19  cacaaggagaaggagggaga 38
           ||||||||||||||||||||
Sbjct: 449 cacaaggagaaggagggaga 468
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>emb|CR937025.1|PT027O15 Pan troglodytes chromosome 11 BAC PTB-027O15, complete sequence
          Length = 155399

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    aaggagaaggagggagagca 41
             ||||||||||||||||||||
Sbjct: 21438 aaggagaaggagggagagca 21457
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>gb|AY072040.1| Expression vector pANT1202, complete sequence
          Length = 6342

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 138 ccggcggggccgaccccggg 157
           ||||||||||||||||||||
Sbjct: 61  ccggcggggccgaccccggg 80
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>gb|AY072039.1| Expression vector pANT1201, complete sequence
          Length = 6607

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 138 ccggcggggccgaccccggg 157
           ||||||||||||||||||||
Sbjct: 26  ccggcggggccgaccccggg 45
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>gb|AY072038.1| Expression vector pANT1200, complete sequence
          Length = 8058

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 138  ccggcggggccgaccccggg 157
            ||||||||||||||||||||
Sbjct: 2560 ccggcggggccgaccccggg 2579
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>gb|AY072037.1| Expression vector pANT849, complete sequence
          Length = 5349

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 138 ccggcggggccgaccccggg 157
           ||||||||||||||||||||
Sbjct: 21  ccggcggggccgaccccggg 40
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>gb|AC109602.6| Oryza sativa chromosome 3 BAC OSJNBa0087M10 genomic sequence, complete
             sequence
          Length = 167397

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 73    acccaatcgctccctcgaccatggccgc 100
             |||| ||||||||||||||||| |||||
Sbjct: 94891 accccatcgctccctcgaccatcgccgc 94918
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>gb|AC006917.6|AC006917 Genomic sequence for Arabidopsis thaliana BAC F10B6 from chromosome I,
             complete sequence
          Length = 132699

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    cacaaggagaaggagggaga 38
             ||||||||||||||||||||
Sbjct: 50053 cacaaggagaaggagggaga 50034
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>emb|AJ414669.1|PI414669 Cloning vector pIJ6021
          Length = 8215

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 138  ccggcggggccgaccccggg 157
            ||||||||||||||||||||
Sbjct: 5645 ccggcggggccgaccccggg 5664
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>gb|DQ309424.1| Expression vector JN100, complete sequence
          Length = 6460

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 138 ccggcggggccgaccccggg 157
           ||||||||||||||||||||
Sbjct: 61  ccggcggggccgaccccggg 80
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>gb|M21778.1|PIJ101CG Plasmid pIJ101 (from S.lividans), complete genome
          Length = 8830

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 138  ccggcggggccgaccccggg 157
            ||||||||||||||||||||
Sbjct: 8448 ccggcggggccgaccccggg 8467
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>gb|AC132886.18| Mus musculus chromosome 13, clone RP24-267I21, complete sequence
          Length = 184315

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 119   gccgccggcgctcgtccctccggcggg 145
             |||||||||||| ||||||||| ||||
Sbjct: 91552 gccgccggcgcttgtccctccgccggg 91526
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>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10,
             complete sequence
          Length = 187034

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 165   ctcccgctctcctccatcgacaa 187
             |||||||| ||||||||||||||
Sbjct: 50302 ctcccgctatcctccatcgacaa 50280
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>gb|AC123998.7| Mus musculus chromosome 5, clone RP24-421H18, complete sequence
          Length = 151344

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 10     agccaccagcacaaggaga 28
              |||||||||||||||||||
Sbjct: 149815 agccaccagcacaaggaga 149797
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>ref|XM_324005.1| Neurospora crassa OR74A predicted protein (NCU04650.1) partial mRNA
          Length = 2700

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 91  ccatggccgcgcccaccgt 109
           |||||||||||||||||||
Sbjct: 479 ccatggccgcgcccaccgt 461
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>gb|BC051338.1| Homo sapiens endothelial PAS domain protein 1, mRNA (cDNA clone
            MGC:59860 IMAGE:6305604), complete cds
          Length = 5011

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 22   aaggagaaggagggagagcaacc 44
            |||||||||||||||||| ||||
Sbjct: 3239 aaggagaaggagggagagaaacc 3217
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>ref|XM_954100.1| Neurospora crassa OR74A hypothetical protein (NCU04650.1) partial
           mRNA
          Length = 2700

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 91  ccatggccgcgcccaccgt 109
           |||||||||||||||||||
Sbjct: 479 ccatggccgcgcccaccgt 461
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 116    gtcgccgccggcgctcgtc 134
              |||||||||||||||||||
Sbjct: 971540 gtcgccgccggcgctcgtc 971558
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>gb|AC123526.2| Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBa0059J06,
              complete sequence
          Length = 185449

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 88     cgaccatggccgcgcccac 106
              |||||||||||||||||||
Sbjct: 111489 cgaccatggccgcgcccac 111471
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>gb|AC133648.3| Mus musculus BAC clone RP23-291B1 from chromosome 7, complete sequence
          Length = 207234

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 21    caaggagaaggagggagag 39
             |||||||||||||||||||
Sbjct: 94710 caaggagaaggagggagag 94692
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>emb|CR974584.10| Mouse DNA sequence from clone RP23-99K9 on chromosome 12, complete
             sequence
          Length = 216921

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    acaaggagaaggagggaga 38
             |||||||||||||||||||
Sbjct: 55432 acaaggagaaggagggaga 55414
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>gb|AC122012.3| Mus musculus BAC clone RP24-353N4 from 5, complete sequence
          Length = 188867

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 21     caaggagaaggagggagag 39
              |||||||||||||||||||
Sbjct: 113048 caaggagaaggagggagag 113066
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>ref|NM_001430.3| Homo sapiens endothelial PAS domain protein 1 (EPAS1), mRNA
          Length = 5186

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 22   aaggagaaggagggagagcaacc 44
            |||||||||||||||||| ||||
Sbjct: 3412 aaggagaaggagggagagaaacc 3390
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>gb|AC102847.3| Mus musculus, clone RP24-406I1, complete sequence
          Length = 146259

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 11     gccaccagcacaaggagaa 29
              |||||||||||||||||||
Sbjct: 136667 gccaccagcacaaggagaa 136649
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>gb|AC162874.2| Mus musculus chromosome 5, clone RP24-289G19, complete sequence
          Length = 152182

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 10  agccaccagcacaaggaga 28
           |||||||||||||||||||
Sbjct: 939 agccaccagcacaaggaga 921
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>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 10      agccaccagcacaaggagaagga 32
               ||||||||| |||||||||||||
Sbjct: 2079910 agccaccaggacaaggagaagga 2079932
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>emb|AL807371.1|NC5F3 Neurospora crassa DNA linkage group V cosmid contig 5F3
          Length = 83192

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 91    ccatggccgcgcccaccgt 109
             |||||||||||||||||||
Sbjct: 61258 ccatggccgcgcccaccgt 61276
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>gb|AC090097.5| Homo sapiens chromosome 8, clone RP11-369C6, complete sequence
          Length = 170973

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 21    caaggagaaggagggagag 39
             |||||||||||||||||||
Sbjct: 83403 caaggagaaggagggagag 83385
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>gb|AC092472.3| Homo sapiens chromosome 8 clone RP1-96P7 map map 8p21-p11, complete
              sequence
          Length = 167794

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 21     caaggagaaggagggagag 39
              |||||||||||||||||||
Sbjct: 137967 caaggagaaggagggagag 137949
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>dbj|AK123845.1| Homo sapiens cDNA FLJ41851 fis, clone NT2RI3003925, highly  similar
            to ENDOTHELIAL PAS DOMAIN PROTEIN 1
          Length = 3622

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 22   aaggagaaggagggagagcaacc 44
            |||||||||||||||||| ||||
Sbjct: 1897 aaggagaaggagggagagaaacc 1875
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>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011
          Length = 2505489

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 121     cgccggcgctcgtccctcc 139
               |||||||||||||||||||
Sbjct: 2198099 cgccggcgctcgtccctcc 2198081
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>gb|AC140344.3| Mus musculus BAC clone RP23-237M10 from chromosome 12, complete
             sequence
          Length = 205862

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 20    acaaggagaaggagggaga 38
             |||||||||||||||||||
Sbjct: 18827 acaaggagaaggagggaga 18845
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>dbj|AK020153.1| Mus musculus 12 days embryo male wolffian duct includes surrounding
           region cDNA, RIKEN full-length enriched library,
           clone:6720469O03 product:unclassifiable, full insert
           sequence
          Length = 710

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 21  caaggagaaggagggagag 39
           |||||||||||||||||||
Sbjct: 448 caaggagaaggagggagag 466
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>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 16     cagcacaaggagaaggagg 34
              |||||||||||||||||||
Sbjct: 496238 cagcacaaggagaaggagg 496256
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 110      caccaagtcgccgccggcg 128
                |||||||||||||||||||
Sbjct: 25235790 caccaagtcgccgccggcg 25235808



 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 88      cgaccatggccgcgcccac 106
               |||||||||||||||||||
Sbjct: 1986182 cgaccatggccgcgcccac 1986164
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 88      cgaccatggccgcgcccac 106
               |||||||||||||||||||
Sbjct: 2039934 cgaccatggccgcgcccac 2039916
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 165     ctcccgctctcctccatcgacaa 187
               |||||||| ||||||||||||||
Sbjct: 7725313 ctcccgctatcctccatcgacaa 7725335
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 165      ctcccgctctcctccatcgacaa 187
                |||||||| ||||||||||||||
Sbjct: 28266060 ctcccgctatcctccatcgacaa 28266038
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>gb|AC012511.7| Homo sapiens BAC clone RP11-548P2 from 2, complete sequence
          Length = 153741

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 19    cacaaggagaaggagggag 37
             |||||||||||||||||||
Sbjct: 97686 cacaaggagaaggagggag 97704
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>gb|AC016912.7| Homo sapiens BAC clone RP11-480A6 from 2, complete sequence
          Length = 143996

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 22    aaggagaaggagggagagcaacc 44
             |||||||||||||||||| ||||
Sbjct: 61360 aaggagaaggagggagagaaacc 61338
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 110     caccaagtcgccgccggcg 128
               |||||||||||||||||||
Sbjct: 1773050 caccaagtcgccgccggcg 1773032
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>dbj|AP005971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0079K11
          Length = 130082

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 165   ctcccgctctcctccatcgacaa 187
             |||||||| ||||||||||||||
Sbjct: 92875 ctcccgctatcctccatcgacaa 92897
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>dbj|AK120954.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039E10, full
           insert sequence
          Length = 2917

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 88  cgaccatggccgcgcccac 106
           |||||||||||||||||||
Sbjct: 893 cgaccatggccgcgcccac 875
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>gb|AC107453.14| Mus musculus chromosome 15, clone RP23-315F3, complete sequence
          Length = 193381

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 11    gccaccagcacaaggagaa 29
             |||||||||||||||||||
Sbjct: 13623 gccaccagcacaaggagaa 13605
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>gb|AF063006.1|AF063006 Mus musculus SMAD5 (Smad5) mRNA, complete cds
          Length = 4567

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 119 gccgccggcgctcgtccctccggcggg 145
           |||||||||||| ||||||||| ||||
Sbjct: 140 gccgccggcgcttgtccctccgccggg 114
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 88      cgaccatggccgcgcccac 106
               |||||||||||||||||||
Sbjct: 2047715 cgaccatggccgcgcccac 2047697
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 110      caccaagtcgccgccggcg 128
                |||||||||||||||||||
Sbjct: 25163966 caccaagtcgccgccggcg 25163984



 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 88      cgaccatggccgcgcccac 106
               |||||||||||||||||||
Sbjct: 1986133 cgaccatggccgcgcccac 1986115
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>emb|AL928783.4|CNS08CCD Oryza sativa chromosome 12, . BAC OSJNBa0028B04 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 158885

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 88    cgaccatggccgcgcccac 106
             |||||||||||||||||||
Sbjct: 17075 cgaccatggccgcgcccac 17057
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>emb|AL732535.4|CNS08C9A Oryza sativa chromosome 12, . BAC OSJNBa0035N13 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 158927

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 110    caccaagtcgccgccggcg 128
              |||||||||||||||||||
Sbjct: 101400 caccaagtcgccgccggcg 101382
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>gb|AC160642.2| Gallus gallus BAC clone CH261-121M12 from chromosome unknown, complete
              sequence
          Length = 200333

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 21     caaggagaaggagggagag 39
              |||||||||||||||||||
Sbjct: 133999 caaggagaaggagggagag 134017


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,490,567
Number of Sequences: 3902068
Number of extensions: 1490567
Number of successful extensions: 123937
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122555
Number of HSP's gapped (non-prelim): 1382
length of query: 193
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 171
effective length of database: 17,147,199,772
effective search space: 2932171161012
effective search space used: 2932171161012
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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