ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet41f06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189676.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1161 Score = 597 bits (301), Expect = e-167 Identities = 400/433 (92%) Strand = Plus / Plus Query: 7 gcggtggacgcgtacgcgtgcgacgagttccgcatgtacgacttcaaggtgcgccggtgc 66 |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| Sbjct: 202 gcggtggacgcgtacgcgtgcgacgagttccggatgtacgagttcaaggtgcggcggtgc 261 Query: 67 gcgcgcggccggagccacgactggaccgagtgccccttcgcgcacccgggggagaaggcg 126 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 262 gcgcgcgggcggagccatgactggaccgagtgccccttcgcgcacccgggggagaaggcg 321 Query: 127 cgccgccgcgacccgcgcaagtaccactactccggcaccgcctgccccgacttccgcaag 186 ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct: 322 cgccgccgcgatccgcgcaagtaccactactccggcaccgcgtgcccggacttccgcaag 381 Query: 187 ggcggatgcaagcgcggcgacgcctgcgagtacgcgcacggcgtcttcgagtgctggctc 246 ||||| ||||||||||||||||||||||||||||| |||||||| || ||||| |||||| Sbjct: 382 ggcgggtgcaagcgcggcgacgcctgcgagtacgcccacggcgtgtttgagtgttggctc 441 Query: 247 cacccggcgcgctaccgcacgcagccctgcaaggacggcaccgcctgccgccgccgcgtc 306 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct: 442 cacccggcgcgctaccgcacccagccgtgcaaggacggcaccgcctgccgccgccgcgtc 501 Query: 307 tgcttcttcgcccacacccccgaccagctccgcgccatgccgtcccagcactccagcccc 366 |||||||||||||||||||| ||||||||||||| | | ||| | ||||| ||||||||| Sbjct: 502 tgcttcttcgcccacaccccggaccagctccgcgtcctcccggcgcagcagtccagcccc 561 Query: 367 aggagcacgccgctgtccccgctcgccgagtcctacgacggctccccgcttcggcgccag 426 |||||| | || || ||||| |||||||||||||||||||| ||||| || |||||| Sbjct: 562 aggagcgtggcgtcctcgccgctggccgagtcctacgacggctcgccgctgcgccgccag 621 Query: 427 gcgttcgagagct 439 ||||||||||||| Sbjct: 622 gcgttcgagagct 634
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 597 bits (301), Expect = e-167 Identities = 400/433 (92%) Strand = Plus / Minus Query: 7 gcggtggacgcgtacgcgtgcgacgagttccgcatgtacgacttcaaggtgcgccggtgc 66 |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| Sbjct: 4949811 gcggtggacgcgtacgcgtgcgacgagttccggatgtacgagttcaaggtgcggcggtgc 4949752 Query: 67 gcgcgcggccggagccacgactggaccgagtgccccttcgcgcacccgggggagaaggcg 126 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 4949751 gcgcgcgggcggagccatgactggaccgagtgccccttcgcgcacccgggggagaaggcg 4949692 Query: 127 cgccgccgcgacccgcgcaagtaccactactccggcaccgcctgccccgacttccgcaag 186 ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct: 4949691 cgccgccgcgatccgcgcaagtaccactactccggcaccgcgtgcccggacttccgcaag 4949632 Query: 187 ggcggatgcaagcgcggcgacgcctgcgagtacgcgcacggcgtcttcgagtgctggctc 246 ||||| ||||||||||||||||||||||||||||| |||||||| || ||||| |||||| Sbjct: 4949631 ggcgggtgcaagcgcggcgacgcctgcgagtacgcccacggcgtgtttgagtgttggctc 4949572 Query: 247 cacccggcgcgctaccgcacgcagccctgcaaggacggcaccgcctgccgccgccgcgtc 306 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct: 4949571 cacccggcgcgctaccgcacccagccgtgcaaggacggcaccgcctgccgccgccgcgtc 4949512 Query: 307 tgcttcttcgcccacacccccgaccagctccgcgccatgccgtcccagcactccagcccc 366 |||||||||||||||||||| ||||||||||||| | | ||| | ||||| ||||||||| Sbjct: 4949511 tgcttcttcgcccacaccccggaccagctccgcgtcctcccggcgcagcagtccagcccc 4949452 Query: 367 aggagcacgccgctgtccccgctcgccgagtcctacgacggctccccgcttcggcgccag 426 |||||| | || || ||||| |||||||||||||||||||| ||||| || |||||| Sbjct: 4949451 aggagcgtggcgtcctcgccgctggccgagtcctacgacggctcgccgctgcgccgccag 4949392 Query: 427 gcgttcgagagct 439 ||||||||||||| Sbjct: 4949391 gcgttcgagagct 4949379 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 299 gccgcgtctgcttcttcgcccacac 323 ||||| ||||||||||||||||||| Sbjct: 14244158 gccgcatctgcttcttcgcccacac 14244134 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 241 tggctccacccggcgcgctaccgcacgc 268 ||||| |||||| ||||||||||||||| Sbjct: 30818350 tggctgcacccgtcgcgctaccgcacgc 30818377
>dbj|AP002746.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0671B11 Length = 168372 Score = 597 bits (301), Expect = e-167 Identities = 400/433 (92%) Strand = Plus / Minus Query: 7 gcggtggacgcgtacgcgtgcgacgagttccgcatgtacgacttcaaggtgcgccggtgc 66 |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| Sbjct: 50264 gcggtggacgcgtacgcgtgcgacgagttccggatgtacgagttcaaggtgcggcggtgc 50205 Query: 67 gcgcgcggccggagccacgactggaccgagtgccccttcgcgcacccgggggagaaggcg 126 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 50204 gcgcgcgggcggagccatgactggaccgagtgccccttcgcgcacccgggggagaaggcg 50145 Query: 127 cgccgccgcgacccgcgcaagtaccactactccggcaccgcctgccccgacttccgcaag 186 ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct: 50144 cgccgccgcgatccgcgcaagtaccactactccggcaccgcgtgcccggacttccgcaag 50085 Query: 187 ggcggatgcaagcgcggcgacgcctgcgagtacgcgcacggcgtcttcgagtgctggctc 246 ||||| ||||||||||||||||||||||||||||| |||||||| || ||||| |||||| Sbjct: 50084 ggcgggtgcaagcgcggcgacgcctgcgagtacgcccacggcgtgtttgagtgttggctc 50025 Query: 247 cacccggcgcgctaccgcacgcagccctgcaaggacggcaccgcctgccgccgccgcgtc 306 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct: 50024 cacccggcgcgctaccgcacccagccgtgcaaggacggcaccgcctgccgccgccgcgtc 49965 Query: 307 tgcttcttcgcccacacccccgaccagctccgcgccatgccgtcccagcactccagcccc 366 |||||||||||||||||||| ||||||||||||| | | ||| | ||||| ||||||||| Sbjct: 49964 tgcttcttcgcccacaccccggaccagctccgcgtcctcccggcgcagcagtccagcccc 49905 Query: 367 aggagcacgccgctgtccccgctcgccgagtcctacgacggctccccgcttcggcgccag 426 |||||| | || || ||||| |||||||||||||||||||| ||||| || |||||| Sbjct: 49904 aggagcgtggcgtcctcgccgctggccgagtcctacgacggctcgccgctgcgccgccag 49845 Query: 427 gcgttcgagagct 439 ||||||||||||| Sbjct: 49844 gcgttcgagagct 49832
>dbj|AK100770.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023119N23, full insert sequence Length = 1991 Score = 597 bits (301), Expect = e-167 Identities = 400/433 (92%) Strand = Plus / Plus Query: 7 gcggtggacgcgtacgcgtgcgacgagttccgcatgtacgacttcaaggtgcgccggtgc 66 |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| Sbjct: 314 gcggtggacgcgtacgcgtgcgacgagttccggatgtacgagttcaaggtgcggcggtgc 373 Query: 67 gcgcgcggccggagccacgactggaccgagtgccccttcgcgcacccgggggagaaggcg 126 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 374 gcgcgcgggcggagccatgactggaccgagtgccccttcgcgcacccgggggagaaggcg 433 Query: 127 cgccgccgcgacccgcgcaagtaccactactccggcaccgcctgccccgacttccgcaag 186 ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct: 434 cgccgccgcgatccgcgcaagtaccactactccggcaccgcgtgcccggacttccgcaag 493 Query: 187 ggcggatgcaagcgcggcgacgcctgcgagtacgcgcacggcgtcttcgagtgctggctc 246 ||||| ||||||||||||||||||||||||||||| |||||||| || ||||| |||||| Sbjct: 494 ggcgggtgcaagcgcggcgacgcctgcgagtacgcccacggcgtgtttgagtgttggctc 553 Query: 247 cacccggcgcgctaccgcacgcagccctgcaaggacggcaccgcctgccgccgccgcgtc 306 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct: 554 cacccggcgcgctaccgcacccagccgtgcaaggacggcaccgcctgccgccgccgcgtc 613 Query: 307 tgcttcttcgcccacacccccgaccagctccgcgccatgccgtcccagcactccagcccc 366 |||||||||||||||||||| ||||||||||||| | | ||| | ||||| ||||||||| Sbjct: 614 tgcttcttcgcccacaccccggaccagctccgcgtcctcccggcgcagcagtccagcccc 673 Query: 367 aggagcacgccgctgtccccgctcgccgagtcctacgacggctccccgcttcggcgccag 426 |||||| | || || ||||| |||||||||||||||||||| ||||| || |||||| Sbjct: 674 aggagcgtggcgtcctcgccgctggccgagtcctacgacggctcgccgctgcgccgccag 733 Query: 427 gcgttcgagagct 439 ||||||||||||| Sbjct: 734 gcgttcgagagct 746
>ref|XM_476081.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1209 Score = 452 bits (228), Expect = e-124 Identities = 312/340 (91%) Strand = Plus / Plus Query: 1 gcggccgcggtggacgcgtacgcgtgcgacgagttccgcatgtacgacttcaaggtgcgc 60 ||||| ||||||||||||||||||||||| |||||| | |||||||| ||||||||||| Sbjct: 199 gcggcggcggtggacgcgtacgcgtgcgatgagttcaggatgtacgagttcaaggtgcgg 258 Query: 61 cggtgcgcgcgcggccggagccacgactggaccgagtgccccttcgcgcacccgggggag 120 |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 259 cggtgcgcgcgcgggcggagccatgactggacggagtgccccttcgcgcacccgggggag 318 Query: 121 aaggcgcgccgccgcgacccgcgcaagtaccactactccggcaccgcctgccccgacttc 180 |||||||| || | ||||| | |||| |||||||||||| || ||||| |||||| Sbjct: 319 aaggcgcggcggagggaccccaggcggtactgctactccggcacggcgtgcccggacttc 378 Query: 181 cgcaagggcggatgcaagcgcggcgacgcctgcgagtacgcgcacggcgtcttcgagtgc 240 ||||||||||| ||||||||||||||||||||||||| ||||||||| || ||||||||| Sbjct: 379 cgcaagggcgggtgcaagcgcggcgacgcctgcgagttcgcgcacggggtgttcgagtgc 438 Query: 241 tggctccacccggcgcgctaccgcacgcagccctgcaaggacggcaccgcctgccgccgc 300 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 439 tggctccacccggcgcgctaccggacgcagccctgcaaggacggcaccgcctgccgccgc 498 Query: 301 cgcgtctgcttcttcgcccacacccccgaccagctccgcg 340 |||||||||||||||||||||||||||||||||||||||| Sbjct: 499 cgcgtctgcttcttcgcccacacccccgaccagctccgcg 538 Score = 101 bits (51), Expect = 2e-18 Identities = 57/59 (96%) Strand = Plus / Plus Query: 381 gtccccgctcgccgagtcctacgacggctccccgcttcggcgccaggcgttcgagagct 439 |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 612 gtccccgctcgccgagtcctacgacggctcgccgctccggcgccaggcgttcgagagct 670
>gb|AC132486.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0473H02, complete sequence Length = 141027 Score = 452 bits (228), Expect = e-124 Identities = 312/340 (91%) Strand = Plus / Minus Query: 1 gcggccgcggtggacgcgtacgcgtgcgacgagttccgcatgtacgacttcaaggtgcgc 60 ||||| ||||||||||||||||||||||| |||||| | |||||||| ||||||||||| Sbjct: 88364 gcggcggcggtggacgcgtacgcgtgcgatgagttcaggatgtacgagttcaaggtgcgg 88305 Query: 61 cggtgcgcgcgcggccggagccacgactggaccgagtgccccttcgcgcacccgggggag 120 |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 88304 cggtgcgcgcgcgggcggagccatgactggacggagtgccccttcgcgcacccgggggag 88245 Query: 121 aaggcgcgccgccgcgacccgcgcaagtaccactactccggcaccgcctgccccgacttc 180 |||||||| || | ||||| | |||| |||||||||||| || ||||| |||||| Sbjct: 88244 aaggcgcggcggagggaccccaggcggtactgctactccggcacggcgtgcccggacttc 88185 Query: 181 cgcaagggcggatgcaagcgcggcgacgcctgcgagtacgcgcacggcgtcttcgagtgc 240 ||||||||||| ||||||||||||||||||||||||| ||||||||| || ||||||||| Sbjct: 88184 cgcaagggcgggtgcaagcgcggcgacgcctgcgagttcgcgcacggggtgttcgagtgc 88125 Query: 241 tggctccacccggcgcgctaccgcacgcagccctgcaaggacggcaccgcctgccgccgc 300 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 88124 tggctccacccggcgcgctaccggacgcagccctgcaaggacggcaccgcctgccgccgc 88065 Query: 301 cgcgtctgcttcttcgcccacacccccgaccagctccgcg 340 |||||||||||||||||||||||||||||||||||||||| Sbjct: 88064 cgcgtctgcttcttcgcccacacccccgaccagctccgcg 88025 Score = 101 bits (51), Expect = 2e-18 Identities = 57/59 (96%) Strand = Plus / Minus Query: 381 gtccccgctcgccgagtcctacgacggctccccgcttcggcgccaggcgttcgagagct 439 |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 87951 gtccccgctcgccgagtcctacgacggctcgccgctccggcgccaggcgttcgagagct 87893
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 452 bits (228), Expect = e-124 Identities = 312/340 (91%) Strand = Plus / Minus Query: 1 gcggccgcggtggacgcgtacgcgtgcgacgagttccgcatgtacgacttcaaggtgcgc 60 ||||| ||||||||||||||||||||||| |||||| | |||||||| ||||||||||| Sbjct: 5765990 gcggcggcggtggacgcgtacgcgtgcgatgagttcaggatgtacgagttcaaggtgcgg 5765931 Query: 61 cggtgcgcgcgcggccggagccacgactggaccgagtgccccttcgcgcacccgggggag 120 |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 5765930 cggtgcgcgcgcgggcggagccatgactggacggagtgccccttcgcgcacccgggggag 5765871 Query: 121 aaggcgcgccgccgcgacccgcgcaagtaccactactccggcaccgcctgccccgacttc 180 |||||||| || | ||||| | |||| |||||||||||| || ||||| |||||| Sbjct: 5765870 aaggcgcggcggagggaccccaggcggtactgctactccggcacggcgtgcccggacttc 5765811 Query: 181 cgcaagggcggatgcaagcgcggcgacgcctgcgagtacgcgcacggcgtcttcgagtgc 240 ||||||||||| ||||||||||||||||||||||||| ||||||||| || ||||||||| Sbjct: 5765810 cgcaagggcgggtgcaagcgcggcgacgcctgcgagttcgcgcacggggtgttcgagtgc 5765751 Query: 241 tggctccacccggcgcgctaccgcacgcagccctgcaaggacggcaccgcctgccgccgc 300 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 5765750 tggctccacccggcgcgctaccggacgcagccctgcaaggacggcaccgcctgccgccgc 5765691 Query: 301 cgcgtctgcttcttcgcccacacccccgaccagctccgcg 340 |||||||||||||||||||||||||||||||||||||||| Sbjct: 5765690 cgcgtctgcttcttcgcccacacccccgaccagctccgcg 5765651 Score = 101 bits (51), Expect = 2e-18 Identities = 57/59 (96%) Strand = Plus / Minus Query: 381 gtccccgctcgccgagtcctacgacggctccccgcttcggcgccaggcgttcgagagct 439 |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 5765577 gtccccgctcgccgagtcctacgacggctcgccgctccggcgccaggcgttcgagagct 5765519 Score = 97.6 bits (49), Expect = 3e-17 Identities = 118/141 (83%) Strand = Plus / Plus Query: 202 ggcgacgcctgcgagtacgcgcacggcgtcttcgagtgctggctccacccggcgcgctac 261 |||||||| ||||||||||| || ||||| ||||||||||||||||||||||||| ||| Sbjct: 1602602 ggcgacgcgtgcgagtacgcccatggcgtgttcgagtgctggctccacccggcgcagtac 1602661 Query: 262 cgcacgcagccctgcaaggacggcaccgcctgccgccgccgcgtctgcttcttcgcccac 321 | |||| | ||||||||||| || |||| |||||| ||||||||||||||||| Sbjct: 1602662 aggacgcgcctctgcaaggacgaggtcggctgcgcgcgccgcatctgcttcttcgcccac 1602721 Query: 322 acccccgaccagctccgcgcc 342 | |||||| ||||||||||| Sbjct: 1602722 aagcccgacgagctccgcgcc 1602742 Score = 87.7 bits (44), Expect = 3e-14 Identities = 104/124 (83%) Strand = Plus / Minus Query: 219 cgcgcacggcgtcttcgagtgctggctccacccggcgcgctaccgcacgcagccctgcaa 278 |||||||||| |||||| ||||||||||||| ||||||||||||||| ||| ||| Sbjct: 25965105 cgcgcacggcacgttcgagctctggctccacccgtcgcgctaccgcacgcggccgtgccg 25965046 Query: 279 ggacggcaccgcctgccgccgccgcgtctgcttcttcgcccacacccccgaccagctccg 338 | ||| ||| |||||||||||||||||||||||||| |||||| ||| | ||||||| Sbjct: 25965045 cgcgggcgtcgcgtgccgccgccgcgtctgcttcttcgcgcacaccgccggcgagctccg 25964986 Query: 339 cgcc 342 |||| Sbjct: 25964985 cgcc 25964982 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 40 atgtacgacttcaaggtgcgccggtgcgcgcgcggccggagccacgactggaccgagtgc 99 |||||||| ||||||||||| ||||||||||| | ||||||||||||||||| | |||| Sbjct: 25965293 atgtacgagttcaaggtgcggcggtgcgcgcgggcgcggagccacgactggacggcgtgc 25965234 Query: 100 cccttcgcgcaccc 113 || | ||||||||| Sbjct: 25965233 ccgtacgcgcaccc 25965220 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 85 gactggaccgagtgccccttcgcgcacccgggggagaaggcgcgccgccgcgaccc 140 |||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| Sbjct: 1602482 gactggaccgagtgccccttcgtccaccccggcgagaacgcgcgccgccgcgaccc 1602537
>dbj|AK106392.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-F01, full insert sequence Length = 1496 Score = 452 bits (228), Expect = e-124 Identities = 312/340 (91%) Strand = Plus / Plus Query: 1 gcggccgcggtggacgcgtacgcgtgcgacgagttccgcatgtacgacttcaaggtgcgc 60 ||||| ||||||||||||||||||||||| |||||| | |||||||| ||||||||||| Sbjct: 280 gcggcggcggtggacgcgtacgcgtgcgatgagttcaggatgtacgagttcaaggtgcgg 339 Query: 61 cggtgcgcgcgcggccggagccacgactggaccgagtgccccttcgcgcacccgggggag 120 |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 340 cggtgcgcgcgcgggcggagccatgactggacggagtgccccttcgcgcacccgggggag 399 Query: 121 aaggcgcgccgccgcgacccgcgcaagtaccactactccggcaccgcctgccccgacttc 180 |||||||| || | ||||| | |||| |||||||||||| || ||||| |||||| Sbjct: 400 aaggcgcggcggagggaccccaggcggtactgctactccggcacggcgtgcccggacttc 459 Query: 181 cgcaagggcggatgcaagcgcggcgacgcctgcgagtacgcgcacggcgtcttcgagtgc 240 ||||||||||| ||||||||||||||||||||||||| ||||||||| || ||||||||| Sbjct: 460 cgcaagggcgggtgcaagcgcggcgacgcctgcgagttcgcgcacggggtgttcgagtgc 519 Query: 241 tggctccacccggcgcgctaccgcacgcagccctgcaaggacggcaccgcctgccgccgc 300 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 520 tggctccacccggcgcgctaccggacgcagccctgcaaggacggcaccgcctgccgccgc 579 Query: 301 cgcgtctgcttcttcgcccacacccccgaccagctccgcg 340 |||||||||||||||||||||||||||||||||||||||| Sbjct: 580 cgcgtctgcttcttcgcccacacccccgaccagctccgcg 619 Score = 101 bits (51), Expect = 2e-18 Identities = 57/59 (96%) Strand = Plus / Plus Query: 381 gtccccgctcgccgagtcctacgacggctccccgcttcggcgccaggcgttcgagagct 439 |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 693 gtccccgctcgccgagtcctacgacggctcgccgctccggcgccaggcgttcgagagct 751
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 129 bits (65), Expect = 8e-27 Identities = 113/129 (87%) Strand = Plus / Plus Query: 211 tgcgagtacgcgcacggcgtcttcgagtgctggctccacccggcgcgctaccgcacgcag 270 ||||||||||||||||| || |||||| |||||||||||||||||| ||||| |||| Sbjct: 20060312 tgcgagtacgcgcacggggtgttcgagagctggctccacccggcgcagtaccggacgcgc 20060371 Query: 271 ccctgcaaggacggcaccgcctgccgccgccgcgtctgcttcttcgcccacacccccgac 330 | ||||||||||||| || |||| ||||||||||||||||||||||||||| |||||| Sbjct: 20060372 ctctgcaaggacggcgtcggctgcgcccgccgcgtctgcttcttcgcccacacgcccgac 20060431 Query: 331 cagctccgc 339 |||||||| Sbjct: 20060432 gagctccgc 20060440 Score = 63.9 bits (32), Expect = 4e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 85 gactggaccgagtgccccttcgcgcacccgggggagaaggcgcgccgccgcgacccgcgc 144 |||||||| ||||||||||||| ||||| || ||||| ||||| || ||||||||| | Sbjct: 20060183 gactggacggagtgccccttcgtccaccccggcgagaacgcgcggcggcgcgacccgagg 20060242 Query: 145 aagtaccactac 156 |||||||||||| Sbjct: 20060243 aagtaccactac 20060254
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 129 bits (65), Expect = 8e-27 Identities = 113/129 (87%) Strand = Plus / Plus Query: 211 tgcgagtacgcgcacggcgtcttcgagtgctggctccacccggcgcgctaccgcacgcag 270 ||||||||||||||||| || |||||| |||||||||||||||||| ||||| |||| Sbjct: 19986526 tgcgagtacgcgcacggggtgttcgagagctggctccacccggcgcagtaccggacgcgc 19986585 Query: 271 ccctgcaaggacggcaccgcctgccgccgccgcgtctgcttcttcgcccacacccccgac 330 | ||||||||||||| || |||| ||||||||||||||||||||||||||| |||||| Sbjct: 19986586 ctctgcaaggacggcgtcggctgcgcccgccgcgtctgcttcttcgcccacacgcccgac 19986645 Query: 331 cagctccgc 339 |||||||| Sbjct: 19986646 gagctccgc 19986654 Score = 63.9 bits (32), Expect = 4e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 85 gactggaccgagtgccccttcgcgcacccgggggagaaggcgcgccgccgcgacccgcgc 144 |||||||| ||||||||||||| ||||| || ||||| ||||| || ||||||||| | Sbjct: 19986397 gactggacggagtgccccttcgtccaccccggcgagaacgcgcggcggcgcgacccgagg 19986456 Query: 145 aagtaccactac 156 |||||||||||| Sbjct: 19986457 aagtaccactac 19986468
>emb|AL713900.4|CNS07YQ0 Oryza sativa chromosome 12, . BAC OJ1126_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 99791 Score = 129 bits (65), Expect = 8e-27 Identities = 113/129 (87%) Strand = Plus / Plus Query: 211 tgcgagtacgcgcacggcgtcttcgagtgctggctccacccggcgcgctaccgcacgcag 270 ||||||||||||||||| || |||||| |||||||||||||||||| ||||| |||| Sbjct: 40474 tgcgagtacgcgcacggggtgttcgagagctggctccacccggcgcagtaccggacgcgc 40533 Query: 271 ccctgcaaggacggcaccgcctgccgccgccgcgtctgcttcttcgcccacacccccgac 330 | ||||||||||||| || |||| ||||||||||||||||||||||||||| |||||| Sbjct: 40534 ctctgcaaggacggcgtcggctgcgcccgccgcgtctgcttcttcgcccacacgcccgac 40593 Query: 331 cagctccgc 339 |||||||| Sbjct: 40594 gagctccgc 40602 Score = 63.9 bits (32), Expect = 4e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 85 gactggaccgagtgccccttcgcgcacccgggggagaaggcgcgccgccgcgacccgcgc 144 |||||||| ||||||||||||| ||||| || ||||| ||||| || ||||||||| | Sbjct: 40345 gactggacggagtgccccttcgtccaccccggcgagaacgcgcggcggcgcgacccgagg 40404 Query: 145 aagtaccactac 156 |||||||||||| Sbjct: 40405 aagtaccactac 40416
>gb|M22076.1|MZETNMUT Maize Mu transposable element MRS-A Length = 1557 Score = 107 bits (54), Expect = 3e-20 Identities = 75/82 (91%) Strand = Plus / Plus Query: 202 ggcgacgcctgcgagtacgcgcacggcgtcttcgagtgctggctccacccggcgcgctac 261 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 965 ggcgacggctgcgagtacgcgcacggcgtcttcgagtgctggctccacccggcgcagtac 1024 Query: 262 cgcacgcagccctgcaaggacg 283 || |||| | ||||||||||| Sbjct: 1025 cggacgcgcctctgcaaggacg 1046 Score = 77.8 bits (39), Expect = 3e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 82 cacgactggaccgagtgccccttcgcgcacccgggggagaaggcgcgccgccgcgacccg 141 ||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||| ||||| Sbjct: 842 cacgactggaccgagtgccccttcgtgcacccgggcgagaacgcgcggcgccggcacccg 901 Query: 142 cgc 144 ||| Sbjct: 902 cgc 904 Score = 46.1 bits (23), Expect = 0.096 Identities = 29/31 (93%) Strand = Plus / Plus Query: 27 cgacgagttccgcatgtacgacttcaaggtg 57 ||||||||||||||||||| |||||||||| Sbjct: 787 cgacgagttccgcatgtacagcttcaaggtg 817
>gb|AC130598.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0056I11, complete sequence Length = 145796 Score = 97.6 bits (49), Expect = 3e-17 Identities = 118/141 (83%) Strand = Plus / Plus Query: 202 ggcgacgcctgcgagtacgcgcacggcgtcttcgagtgctggctccacccggcgcgctac 261 |||||||| ||||||||||| || ||||| ||||||||||||||||||||||||| ||| Sbjct: 54762 ggcgacgcgtgcgagtacgcccatggcgtgttcgagtgctggctccacccggcgcagtac 54821 Query: 262 cgcacgcagccctgcaaggacggcaccgcctgccgccgccgcgtctgcttcttcgcccac 321 | |||| | ||||||||||| || |||| |||||| ||||||||||||||||| Sbjct: 54822 aggacgcgcctctgcaaggacgaggtcggctgcgcgcgccgcatctgcttcttcgcccac 54881 Query: 322 acccccgaccagctccgcgcc 342 | |||||| ||||||||||| Sbjct: 54882 aagcccgacgagctccgcgcc 54902 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 85 gactggaccgagtgccccttcgcgcacccgggggagaaggcgcgccgccgcgaccc 140 |||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| Sbjct: 54642 gactggaccgagtgccccttcgtccaccccggcgagaacgcgcgccgccgcgaccc 54697
>emb|AL662946.2|OSJN00139 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991113_30, complete sequence Length = 141128 Score = 97.6 bits (49), Expect = 3e-17 Identities = 110/129 (85%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 gcggccgcggtggacgcgtacgcgtgcgacgagttccgcatgta-cgacttcaaggtgcg 59 ||||| |||||||||||||||||||| || | | | | ||||| ||| ||||||||||| Sbjct: 51918 gcggcggcggtggacgcgtacgcgtgtgatgggcttaggatgtaacgagttcaaggtgcg 51977 Query: 60 ccggtgcgcgcgcggccggagccacgactggaccgagtgccccttcgcgcacccggggga 119 |||||||||||||| |||||||| |||||||| |||||||| ||| ||| ||| |||| Sbjct: 51978 acggtgcgcgcgcgggcggagccaggactggacggagtgccctttcacgcgtccgaggga 52037 Query: 120 gaaggcgcg 128 ||||||||| Sbjct: 52038 gaaggcgcg 52046 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 175 gacttccgcaagggcggatgcaagcgcggcgacgcctgcgagtacgcgcacggcgtcttc 234 ||||||||||||||||| ||||| | ||||||||| ||||||| ||||||||| || ||| Sbjct: 52100 gacttccgcaagggcgggtgcaatcacggcgacgcgtgcgagttcgcgcacggggtgttc 52159 Query: 235 ga 236 || Sbjct: 52160 ga 52161
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 97.6 bits (49), Expect = 3e-17 Identities = 110/129 (85%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 gcggccgcggtggacgcgtacgcgtgcgacgagttccgcatgta-cgacttcaaggtgcg 59 ||||| |||||||||||||||||||| || | | | | ||||| ||| ||||||||||| Sbjct: 24335507 gcggcggcggtggacgcgtacgcgtgtgatgggcttaggatgtaacgagttcaaggtgcg 24335566 Query: 60 ccggtgcgcgcgcggccggagccacgactggaccgagtgccccttcgcgcacccggggga 119 |||||||||||||| |||||||| |||||||| |||||||| ||| ||| ||| |||| Sbjct: 24335567 acggtgcgcgcgcgggcggagccaggactggacggagtgccctttcacgcgtccgaggga 24335626 Query: 120 gaaggcgcg 128 ||||||||| Sbjct: 24335627 gaaggcgcg 24335635 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 175 gacttccgcaagggcggatgcaagcgcggcgacgcctgcgagtacgcgcacggcgtcttc 234 ||||||||||||||||| ||||| | ||||||||| ||||||| ||||||||| || ||| Sbjct: 24335689 gacttccgcaagggcgggtgcaatcacggcgacgcgtgcgagttcgcgcacggggtgttc 24335748 Query: 235 ga 236 || Sbjct: 24335749 ga 24335750 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 282 cggcaccgcctgccgccgccgcgtc 306 |||||||||| |||||||||||||| Sbjct: 7436092 cggcaccgcccgccgccgccgcgtc 7436068
>dbj|AK105767.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-E04, full insert sequence Length = 2037 Score = 97.6 bits (49), Expect = 3e-17 Identities = 118/141 (83%) Strand = Plus / Plus Query: 202 ggcgacgcctgcgagtacgcgcacggcgtcttcgagtgctggctccacccggcgcgctac 261 |||||||| ||||||||||| || ||||| ||||||||||||||||||||||||| ||| Sbjct: 980 ggcgacgcgtgcgagtacgcccatggcgtgttcgagtgctggctccacccggcgcagtac 1039 Query: 262 cgcacgcagccctgcaaggacggcaccgcctgccgccgccgcgtctgcttcttcgcccac 321 | |||| | ||||||||||| || |||| |||||| ||||||||||||||||| Sbjct: 1040 aggacgcgcctctgcaaggacgaggtcggctgcgcgcgccgcatctgcttcttcgcccac 1099 Query: 322 acccccgaccagctccgcgcc 342 | |||||| ||||||||||| Sbjct: 1100 aagcccgacgagctccgcgcc 1120 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 85 gactggaccgagtgccccttcgcgcacccgggggagaaggcgcgccgccgcgaccc 140 |||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| Sbjct: 860 gactggaccgagtgccccttcgtccaccccggcgagaacgcgcgccgccgcgaccc 915
>dbj|AK099898.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114A13, full insert sequence Length = 1508 Score = 97.6 bits (49), Expect = 3e-17 Identities = 118/141 (83%) Strand = Plus / Plus Query: 202 ggcgacgcctgcgagtacgcgcacggcgtcttcgagtgctggctccacccggcgcgctac 261 |||||||| ||||||||||| || ||||| ||||||||||||||||||||||||| ||| Sbjct: 975 ggcgacgcgtgcgagtacgcccatggcgtgttcgagtgctggctccacccggcgcagtac 1034 Query: 262 cgcacgcagccctgcaaggacggcaccgcctgccgccgccgcgtctgcttcttcgcccac 321 | |||| | ||||||||||| || |||| |||||| ||||||||||||||||| Sbjct: 1035 aggacgcgcctctgcaaggacgaggtcggctgcgcgcgccgcatctgcttcttcgcccac 1094 Query: 322 acccccgaccagctccgcgcc 342 | |||||| ||||||||||| Sbjct: 1095 aagcccgacgagctccgcgcc 1115 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 85 gactggaccgagtgccccttcgcgcacccgggggagaaggcgcgccgccgcgaccc 140 |||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| Sbjct: 855 gactggaccgagtgccccttcgtccaccccggcgagaacgcgcgccgccgcgaccc 910
>ref|XM_472959.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 441 Score = 89.7 bits (45), Expect = 7e-15 Identities = 75/85 (88%) Strand = Plus / Plus Query: 44 acgacttcaaggtgcgccggtgcgcgcgcggccggagccacgactggaccgagtgcccct 103 |||| ||||||||||| |||||||||||||| |||||||| |||||||| |||||||| | Sbjct: 217 acgagttcaaggtgcgacggtgcgcgcgcgggcggagccaggactggacggagtgccctt 276 Query: 104 tcgcgcacccgggggagaaggcgcg 128 || ||| ||| ||||||||||||| Sbjct: 277 tcacgcgtccgagggagaaggcgcg 301 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 175 gacttccgcaagggcggatgcaagcgcggcgacgcctgcgagtacgcgcacggcgtcttc 234 ||||||||||||||||| ||||| | ||||||||| ||||||| ||||||||| || ||| Sbjct: 355 gacttccgcaagggcgggtgcaatcacggcgacgcgtgcgagttcgcgcacggggtgttc 414 Query: 235 ga 236 || Sbjct: 415 ga 416
>gb|AC109596.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1593_C11, complete sequence Length = 112065 Score = 87.7 bits (44), Expect = 3e-14 Identities = 104/124 (83%) Strand = Plus / Minus Query: 219 cgcgcacggcgtcttcgagtgctggctccacccggcgcgctaccgcacgcagccctgcaa 278 |||||||||| |||||| ||||||||||||| ||||||||||||||| ||| ||| Sbjct: 68232 cgcgcacggcacgttcgagctctggctccacccgtcgcgctaccgcacgcggccgtgccg 68173 Query: 279 ggacggcaccgcctgccgccgccgcgtctgcttcttcgcccacacccccgaccagctccg 338 | ||| ||| |||||||||||||||||||||||||| |||||| ||| | ||||||| Sbjct: 68172 cgcgggcgtcgcgtgccgccgccgcgtctgcttcttcgcgcacaccgccggcgagctccg 68113 Query: 339 cgcc 342 |||| Sbjct: 68112 cgcc 68109 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 40 atgtacgacttcaaggtgcgccggtgcgcgcgcggccggagccacgactggaccgagtgc 99 |||||||| ||||||||||| ||||||||||| | ||||||||||||||||| | |||| Sbjct: 68420 atgtacgagttcaaggtgcggcggtgcgcgcgggcgcggagccacgactggacggcgtgc 68361 Query: 100 cccttcgcgcaccc 113 || | ||||||||| Sbjct: 68360 ccgtacgcgcaccc 68347
>dbj|AK108249.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-H10, full insert sequence Length = 1247 Score = 87.7 bits (44), Expect = 3e-14 Identities = 104/124 (83%) Strand = Plus / Plus Query: 219 cgcgcacggcgtcttcgagtgctggctccacccggcgcgctaccgcacgcagccctgcaa 278 |||||||||| |||||| ||||||||||||| ||||||||||||||| ||| ||| Sbjct: 451 cgcgcacggcacgttcgagctctggctccacccgtcgcgctaccgcacgcggccgtgccg 510 Query: 279 ggacggcaccgcctgccgccgccgcgtctgcttcttcgcccacacccccgaccagctccg 338 | ||| ||| |||||||||||||||||||||||||| |||||| ||| | ||||||| Sbjct: 511 cgcgggcgtcgcgtgccgccgccgcgtctgcttcttcgcgcacaccgccggcgagctccg 570 Query: 339 cgcc 342 |||| Sbjct: 571 cgcc 574 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 40 atgtacgacttcaaggtgcgccggtgcgcgcgcggccggagccacgactggaccgagtgc 99 |||||||| ||||||||||| ||||||||||| | ||||||||||||||||| | |||| Sbjct: 263 atgtacgagttcaaggtgcggcggtgcgcgcgggcgcggagccacgactggacggcgtgc 322 Query: 100 cccttcgcgcaccc 113 || | ||||||||| Sbjct: 323 ccgtacgcgcaccc 336
>emb|Y00603.1|ZMTNMU17 Zea mays transposable element Mu1.7 Length = 1754 Score = 85.7 bits (43), Expect = 1e-13 Identities = 74/83 (89%), Gaps = 1/83 (1%) Strand = Plus / Plus Query: 202 ggcgacgcctgcgagtacgcgcacggcgtcttcgagtgctggctcca-cccggcgcgcta 260 ||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| || Sbjct: 1156 ggcgacggctgcgagtacgcgcacgacgtcttcgagtgctggctccaccccggcgcagta 1215 Query: 261 ccgcacgcagccctgcaaggacg 283 ||| |||| | ||||||||||| Sbjct: 1216 ccggacgcgcctctgcaaggacg 1238 Score = 61.9 bits (31), Expect = 2e-06 Identities = 53/59 (89%), Gaps = 1/59 (1%) Strand = Plus / Plus Query: 86 actggaccgagtgccccttcgcgcacccgggggagaaggcgcgccgccgcgacccgcgc 144 ||||||||||||| ||||||| ||||||||| ||||| ||||| ||||| ||||||||| Sbjct: 1040 actggaccgagtg-cccttcgtgcacccgggcgagaacgcgcggcgccgtgacccgcgc 1097 Score = 46.1 bits (23), Expect = 0.096 Identities = 29/31 (93%) Strand = Plus / Plus Query: 27 cgacgagttccgcatgtacgacttcaaggtg 57 ||||||||||||||||||| |||||||||| Sbjct: 981 cgacgagttccgcatgtacagcttcaaggtg 1011
>gb|AY350710.1| Brassica oleracea clone BAC Bo37N21, partial sequence Length = 78346 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 202 ggcgacgcctgcgagtacgcgcacggcgtcttcgagtgctggctccacccggcgcgctac 261 |||||| ||||||||| ||| ||||| || || |||| |||||||||||||||||| ||| Sbjct: 28987 ggcgacacctgcgagttcgcacacggtgtgtttgagtactggctccacccggcgcgttac 29046 Query: 262 cgcacgc 268 || |||| Sbjct: 29047 cggacgc 29053
>gb|AY350715.1| Arabidopsis arenosa clone BAC Aer1B10, complete sequence Length = 78945 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 202 ggcgacgcctgcgagtacgcgcacggcgtcttcgagtgctggctccacccggcgcgctac 261 |||||| | ||||| | |||||| ||||| ||||||| |||||||||||||||||| ||| Sbjct: 15466 ggcgactcatgcgaattcgcgcatggcgtattcgagtactggctccacccggcgcgttac 15525 Query: 262 cg 263 || Sbjct: 15526 cg 15527
>gb|AY350711.1| Sisymbrium irio clone BAC Sio11E11, complete sequence Length = 95357 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 202 ggcgacgcctgcgagtacgcgcacggcgtcttcgagtgctggctccacccggcgcgctac 261 |||||| | ||||||| ||| ||||| || ||||||| |||||||||||||||||| ||| Sbjct: 9836 ggcgacacatgcgagttcgcacacggtgtgttcgagtactggctccacccggcgcgttac 9895 Query: 262 cg 263 || Sbjct: 9896 cg 9897
>gb|AY292860.1| Arabidopsis lyrata subsp. lyrata zing finger transcription factor PEI1 (PEI1), pollen specific glycine-rich protein GRP14 (GRP14), pollen specific glycine-rich protein GRP18 (GRP18), pollen specific glycine-rich protein GRP17 (GRP17), pollen specific glycine-rich protein GRP16 (GRP16), pollen specific glycine-rich protein GRP19 (GRP19), and pollen specific glycine-rich protein GRP20 (GRP20) genes, complete cds; glycine/proline-rich protein (Al5g07570) gene, partial cds; Al5g07580 pseudogene, complete sequence; and WD repeat-like protein (Al5g07590), oleosin (Al5g07600), and F box protein family (Al5g07610) genes, complete cds Length = 33919 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 202 ggcgacgcctgcgagtacgcgcacggcgtcttcgagtgctggctccacccggcgcgctac 261 |||||| | ||||| | |||||| ||||| ||||||| |||||||||||||||||| ||| Sbjct: 328 ggcgactcatgcgaattcgcgcatggcgtattcgagtactggctccacccggcgcgttac 387 Query: 262 cg 263 || Sbjct: 388 cg 389
>gb|AY350712.1| Arabidopsis arenosa clone BAC Aer6D24, complete sequence Length = 87863 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 219 cgcgcacggcgtcttcgagtgctggctccacccggcgcgctaccg 263 |||||| ||||| ||||||| |||||||||||||||||| ||||| Sbjct: 2470 cgcgcatggcgtattcgagtactggctccacccggcgcgttaccg 2514
>gb|AY350713.1| Capsella rubella clone BAC Cr33L6, complete sequence Length = 74492 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 211 tgcgagtacgcgcacggcgtcttcgagtgctggctccacccggcgcg 257 ||||||| ||| |||||||| ||||||| |||||||||||| ||||| Sbjct: 11206 tgcgagttcgcacacggcgtattcgagtactggctccaccctgcgcg 11252
>ref|NM_120832.2| Arabidopsis thaliana PEI1; nucleic acid binding / transcription factor AT5G07500 (PEI1) mRNA, complete cds Length = 1037 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 226 ggcgtcttcgagtgctggctccacccggcgcgctaccg 263 ||||| ||||||| |||||||||||||||||| ||||| Sbjct: 446 ggcgtattcgagtactggctccacccggcgcgttaccg 483
>gb|DQ446927.1| Arabidopsis thaliana clone pENTR221-At5g07500 zinc finger family protein (At5g07500) mRNA, complete cds Length = 738 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 226 ggcgtcttcgagtgctggctccacccggcgcgctaccg 263 ||||| ||||||| |||||||||||||||||| ||||| Sbjct: 349 ggcgtattcgagtactggctccacccggcgcgttaccg 386
>emb|AL163912.1|ATT2I1 Arabidopsis thaliana DNA chromosome 5, BAC clone T2I1 (ESSA project) Length = 116763 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 226 ggcgtcttcgagtgctggctccacccggcgcgctaccg 263 ||||| ||||||| |||||||||||||||||| ||||| Sbjct: 88233 ggcgtattcgagtactggctccacccggcgcgttaccg 88270
>gb|AF050463.1|AF050463 Arabidopsis thaliana zinc finger transcription factor (PEI1) mRNA, complete cds Length = 1051 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 226 ggcgtcttcgagtgctggctccacccggcgcgctaccg 263 ||||| ||||||| |||||||||||||||||| ||||| Sbjct: 445 ggcgtattcgagtactggctccacccggcgcgttaccg 482
>gb|AC151527.13| Medicago truncatula clone mth2-135i19, complete sequence Length = 132470 Score = 48.1 bits (24), Expect = 0.024 Identities = 72/88 (81%) Strand = Plus / Plus Query: 74 gccggagccacgactggaccgagtgccccttcgcgcacccgggggagaaggcgcgccgcc 133 ||||||||||||||||||| || ||||| ||||| || || || || ||||| ||||| | Sbjct: 22503 gccggagccacgactggactgactgccctttcgcccatccaggcgaaaaggcacgccgtc 22562 Query: 134 gcgacccgcgcaagtaccactactccgg 161 | ||||| | || ||| || |||||||| Sbjct: 22563 gtgaccccctcaggtatcagtactccgg 22590
>ref|NM_001036440.1| Arabidopsis thaliana unknown protein AT2G40140 transcript variant AT2G40140.2 mRNA, complete cds Length = 2163 Score = 46.1 bits (23), Expect = 0.096 Identities = 38/43 (88%) Strand = Plus / Plus Query: 214 gagtacgcgcacggcgtcttcgagtgctggctccacccggcgc 256 |||||||||||||| || ||||||| ||||| |||||||||| Sbjct: 865 gagtacgcgcacggtgttttcgagtcttggcttcacccggcgc 907
>ref|NM_129572.3| Arabidopsis thaliana transcription factor AT2G40140 transcript variant AT2G40140.1 mRNA, complete cds Length = 2223 Score = 46.1 bits (23), Expect = 0.096 Identities = 38/43 (88%) Strand = Plus / Plus Query: 214 gagtacgcgcacggcgtcttcgagtgctggctccacccggcgc 256 |||||||||||||| || ||||||| ||||| |||||||||| Sbjct: 925 gagtacgcgcacggtgttttcgagtcttggcttcacccggcgc 967
>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome Length = 241087 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Plus Query: 293 gccgccgccgcgtctgcttcttc 315 ||||||||||||||||||||||| Sbjct: 233976 gccgccgccgcgtctgcttcttc 233998
>gb|AY128937.1| Arabidopsis thaliana putative CCCH-type zinc finger protein (At2g40140) mRNA, complete cds Length = 1849 Score = 46.1 bits (23), Expect = 0.096 Identities = 38/43 (88%) Strand = Plus / Plus Query: 214 gagtacgcgcacggcgtcttcgagtgctggctccacccggcgc 256 |||||||||||||| || ||||||| ||||| |||||||||| Sbjct: 823 gagtacgcgcacggtgttttcgagtcttggcttcacccggcgc 865
>gb|AY093016.1| Arabidopsis thaliana putative CCCH-type zinc finger protein (At2g40140) mRNA, complete cds Length = 2121 Score = 46.1 bits (23), Expect = 0.096 Identities = 38/43 (88%) Strand = Plus / Plus Query: 214 gagtacgcgcacggcgtcttcgagtgctggctccacccggcgc 256 |||||||||||||| || ||||||| ||||| |||||||||| Sbjct: 925 gagtacgcgcacggtgttttcgagtcttggcttcacccggcgc 967
>gb|AC018721.1|AC018721 Arabidopsis thaliana chromosome II section 217 of 255 of the complete sequence. Sequence from clones F27I1, T7M7, T3G21 Length = 57991 Score = 46.1 bits (23), Expect = 0.096 Identities = 38/43 (88%) Strand = Plus / Plus Query: 214 gagtacgcgcacggcgtcttcgagtgctggctccacccggcgc 256 |||||||||||||| || ||||||| ||||| |||||||||| Sbjct: 21137 gagtacgcgcacggtgttttcgagtcttggcttcacccggcgc 21179
>gb|AF085279.1|AF085279 Arabidopsis thaliana ABA-regulated gene cluster, complete sequence Length = 95713 Score = 46.1 bits (23), Expect = 0.096 Identities = 38/43 (88%) Strand = Plus / Plus Query: 214 gagtacgcgcacggcgtcttcgagtgctggctccacccggcgc 256 |||||||||||||| || ||||||| ||||| |||||||||| Sbjct: 18397 gagtacgcgcacggtgttttcgagtcttggcttcacccggcgc 18439
>ref|NM_123793.2| Arabidopsis thaliana nucleic acid binding / transcription factor AT5G44260 mRNA, complete cds Length = 1600 Score = 44.1 bits (22), Expect = 0.38 Identities = 52/62 (83%) Strand = Plus / Plus Query: 34 ttccgcatgtacgacttcaaggtgcgccggtgcgcgcgcggccggagccacgactggacc 93 ||||| |||||||| |||||| | || |||||| |||| |||| ||||| ||||||||| Sbjct: 287 ttccggatgtacgaattcaagatccgacggtgcacgcgtagccgtagccatgactggacc 346 Query: 94 ga 95 || Sbjct: 347 ga 348
>gb|AE010395.1| Methanopyrus kandleri AV19 section 94 of 157 of the complete genome Length = 9706 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 48 cttcaaggtgcgccggtgcgcg 69 |||||||||||||||||||||| Sbjct: 2990 cttcaaggtgcgccggtgcgcg 3011
>ref|NM_186373.2| Oryza sativa (japonica cultivar-group), mRNA Length = 2599 Score = 44.1 bits (22), Expect = 0.38 Identities = 55/66 (83%) Strand = Plus / Plus Query: 82 cacgactggaccgagtgccccttcgcgcacccgggggagaaggcgcgccgccgcgacccg 141 ||||||||||| |||||||| || | |||||| || ||||| || |||||||| || || Sbjct: 988 cacgactggactgagtgcccgtttgtgcaccccggcgagaacgcccgccgccgtgatccc 1047 Query: 142 cgcaag 147 |||||| Sbjct: 1048 cgcaag 1053
>ref|XM_506415.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1092_A07.129 mRNA Length = 2674 Score = 44.1 bits (22), Expect = 0.38 Identities = 55/66 (83%) Strand = Plus / Plus Query: 82 cacgactggaccgagtgccccttcgcgcacccgggggagaaggcgcgccgccgcgacccg 141 ||||||||||| |||||||| || | |||||| || ||||| || |||||||| || || Sbjct: 1000 cacgactggactgagtgcccgtttgtgcaccccggcgagaacgcccgccgccgtgatccc 1059 Query: 142 cgcaag 147 |||||| Sbjct: 1060 cgcaag 1065
>gb|AY142542.1| Arabidopsis thaliana unknown protein (At5g44260) mRNA, complete cds Length = 1177 Score = 44.1 bits (22), Expect = 0.38 Identities = 52/62 (83%) Strand = Plus / Plus Query: 34 ttccgcatgtacgacttcaaggtgcgccggtgcgcgcgcggccggagccacgactggacc 93 ||||| |||||||| |||||| | || |||||| |||| |||| ||||| ||||||||| Sbjct: 181 ttccggatgtacgaattcaagatccgacggtgcacgcgtagccgtagccatgactggacc 240 Query: 94 ga 95 || Sbjct: 241 ga 242
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 321 cacccccgaccagctccgcgcc 342 |||||||||||||||||||||| Sbjct: 2188173 cacccccgaccagctccgcgcc 2188152
>gb|AY034916.1| Arabidopsis thaliana unknown protein (At5g44260) mRNA, complete cds Length = 1545 Score = 44.1 bits (22), Expect = 0.38 Identities = 52/62 (83%) Strand = Plus / Plus Query: 34 ttccgcatgtacgacttcaaggtgcgccggtgcgcgcgcggccggagccacgactggacc 93 ||||| |||||||| |||||| | || |||||| |||| |||| ||||| ||||||||| Sbjct: 287 ttccggatgtacgaattcaagatccgacggtgcacgcgtagccgtagccatgactggacc 346 Query: 94 ga 95 || Sbjct: 347 ga 348
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.38 Identities = 55/66 (83%) Strand = Plus / Plus Query: 82 cacgactggaccgagtgccccttcgcgcacccgggggagaaggcgcgccgccgcgacccg 141 ||||||||||| |||||||| || | |||||| || ||||| || |||||||| || || Sbjct: 22788683 cacgactggactgagtgcccgtttgtgcaccccggcgagaacgcccgccgccgtgatccc 22788742 Query: 142 cgcaag 147 |||||| Sbjct: 22788743 cgcaag 22788748
>dbj|AP003866.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1092_A07 Length = 137081 Score = 44.1 bits (22), Expect = 0.38 Identities = 55/66 (83%) Strand = Plus / Plus Query: 82 cacgactggaccgagtgccccttcgcgcacccgggggagaaggcgcgccgccgcgacccg 141 ||||||||||| |||||||| || | |||||| || ||||| || |||||||| || || Sbjct: 108025 cacgactggactgagtgcccgtttgtgcaccccggcgagaacgcccgccgccgtgatccc 108084 Query: 142 cgcaag 147 |||||| Sbjct: 108085 cgcaag 108090
>dbj|AB011475.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9L2 Length = 60583 Score = 44.1 bits (22), Expect = 0.38 Identities = 52/62 (83%) Strand = Plus / Minus Query: 34 ttccgcatgtacgacttcaaggtgcgccggtgcgcgcgcggccggagccacgactggacc 93 ||||| |||||||| |||||| | || |||||| |||| |||| ||||| ||||||||| Sbjct: 4967 ttccggatgtacgaattcaagatccgacggtgcacgcgtagccgtagccatgactggacc 4908 Query: 94 ga 95 || Sbjct: 4907 ga 4906
>dbj|AK067895.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123G12, full insert sequence Length = 2676 Score = 44.1 bits (22), Expect = 0.38 Identities = 55/66 (83%) Strand = Plus / Plus Query: 82 cacgactggaccgagtgccccttcgcgcacccgggggagaaggcgcgccgccgcgacccg 141 ||||||||||| |||||||| || | |||||| || ||||| || |||||||| || || Sbjct: 1001 cacgactggactgagtgcccgtttgtgcaccccggcgagaacgcccgccgccgtgatccc 1060 Query: 142 cgcaag 147 |||||| Sbjct: 1061 cgcaag 1066
>dbj|AK067784.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116A14, full insert sequence Length = 2599 Score = 44.1 bits (22), Expect = 0.38 Identities = 55/66 (83%) Strand = Plus / Plus Query: 82 cacgactggaccgagtgccccttcgcgcacccgggggagaaggcgcgccgccgcgacccg 141 ||||||||||| |||||||| || | |||||| || ||||| || |||||||| || || Sbjct: 988 cacgactggactgagtgcccgtttgtgcaccccggcgagaacgcccgccgccgtgatccc 1047 Query: 142 cgcaag 147 |||||| Sbjct: 1048 cgcaag 1053
>dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0355, complete sequence Length = 124602 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Plus Query: 86 actggaccgagtgccccttcgcgcacccgggggagaag 123 ||||||| |||||||||||||| ||||| || |||||| Sbjct: 108475 actggacggagtgccccttcgcccaccccggcgagaag 108512
>gb|AF543311.2| Burkholderia cepacia phage Bcep781, complete genome Length = 48247 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 120 gaaggcgcgccgccgcgacccgcgc 144 |||| |||||||||||||||||||| Sbjct: 28828 gaagtcgcgccgccgcgacccgcgc 28804
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 282 cggcaccgcctgccgccgccgcgtctgct 310 |||||||| |||||||||||||| ||||| Sbjct: 1780590 cggcaccggctgccgccgccgcgcctgct 1780562
>emb|Z54206.1|BVH1LFT31 Bovine herpesvirus type 1 31-kb DNA (left genome end) Length = 31444 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 gcgccggtgcgcgcgcggccg 77 ||||||||||||||||||||| Sbjct: 15562 gcgccggtgcgcgcgcggccg 15582
>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome Length = 135301 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 gcgccggtgcgcgcgcggccg 77 ||||||||||||||||||||| Sbjct: 15562 gcgccggtgcgcgcgcggccg 15582
>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0090F16, complete sequence Length = 147341 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 284 gcaccgcctgccgccgccgcg 304 ||||||||||||||||||||| Sbjct: 71771 gcaccgcctgccgccgccgcg 71791
>emb|AL662982.3|OSJN00184 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083I11, complete sequence Length = 149085 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 282 cggcaccgcctgccgccgccgcgtc 306 |||||||||| |||||||||||||| Sbjct: 82445 cggcaccgcccgccgccgccgcgtc 82421
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 124 gcgcgccgccgcgacccgcgc 144 ||||||||||||||||||||| Sbjct: 4991412 gcgcgccgccgcgacccgcgc 4991432
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 284 gcaccgcctgccgccgccgcg 304 ||||||||||||||||||||| Sbjct: 24750717 gcaccgcctgccgccgccgcg 24750697 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cgccggtgcgcgcgcggccg 77 |||||||||||||||||||| Sbjct: 9967532 cgccggtgcgcgcgcggccg 9967513
>gb|AC007163.3| Homo sapiens BAC clone RP11-91M5 from 2, complete sequence Length = 176104 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 348 gtcccagcactccagccccag 368 ||||||||||||||||||||| Sbjct: 77857 gtcccagcactccagccccag 77877
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 124 gcgcgccgccgcgacccgcgc 144 ||||||||||||||||||||| Sbjct: 1942085 gcgcgccgccgcgacccgcgc 1942105
>dbj|AP002870.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0458A05 Length = 120593 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 299 gccgcgtctgcttcttcgcccacac 323 ||||| ||||||||||||||||||| Sbjct: 39848 gccgcatctgcttcttcgcccacac 39824
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 284 gcaccgcctgccgccgccgcg 304 ||||||||||||||||||||| Sbjct: 25062387 gcaccgcctgccgccgccgcg 25062367 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cgccggtgcgcgcgcggccg 77 |||||||||||||||||||| Sbjct: 10039229 cgccggtgcgcgcgcggccg 10039210
>ref|NM_191130.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 678 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 241 tggctccacccggcgcgctaccgcacgc 268 ||||| |||||| ||||||||||||||| Sbjct: 349 tggctgcacccgtcgcgctaccgcacgc 376
>gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence Length = 1207381 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 cgcgccgccgcgacccgcgc 144 |||||||||||||||||||| Sbjct: 868917 cgcgccgccgcgacccgcgc 868936
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 cgcctgccgccgccgcgtctgctt 311 |||||||||||||||| ||||||| Sbjct: 341208 cgcctgccgccgccgcttctgctt 341185
>gb|AC133006.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0072N24 map C61883S, complete sequence Length = 163337 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cgccggtgcgcgcgcggccg 77 |||||||||||||||||||| Sbjct: 61313 cgccggtgcgcgcgcggccg 61294
>gb|AY368235.2| Burkholderia cepacia phage Bcep43, complete genome Length = 48024 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 cgcgccgccgcgacccgcgc 144 |||||||||||||||||||| Sbjct: 28542 cgcgccgccgcgacccgcgc 28523
>gb|AC145799.2| Xenopus tropicalis clone CH216-55B16, complete sequence Length = 163674 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 tgccgccgccgcgtctgctt 311 |||||||||||||||||||| Sbjct: 75780 tgccgccgccgcgtctgctt 75799
>emb|AL513190.13| Human DNA sequence from clone RP11-12J10 on chromosome 10 Contains the 3' end of the LHPP gene for phospholysine phosphohistidine inorganic pyrophosphate phosphatase, the 3' end of gene KIAA0140 (FLJ13019) and a CpG island, complete sequence Length = 120770 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 cccagcactccagccccagg 369 |||||||||||||||||||| Sbjct: 38653 cccagcactccagccccagg 38634
>gb|AC034259.7| Homo sapiens chromosome 11, clone RP11-138N3, complete sequence Length = 206192 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 cagcactccagccccaggag 371 |||||||||||||||||||| Sbjct: 35069 cagcactccagccccaggag 35088
>gb|AC011511.12| Homo sapiens chromosome 19 clone CTD-2369P2, complete sequence Length = 156503 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 ctgccgccgccgcgtctgct 310 |||||||||||||||||||| Sbjct: 9574 ctgccgccgccgcgtctgct 9555
>ref|NM_001379.1| Homo sapiens DNA (cytosine-5-)-methyltransferase 1 (DNMT1), mRNA Length = 5434 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 ctgccgccgccgcgtctgct 310 |||||||||||||||||||| Sbjct: 206 ctgccgccgccgcgtctgct 225
>dbj|AK148296.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library, clone:G370082K04 product:glutamate receptor, ionotropic, kainate 1, full insert sequence Length = 2100 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 aaggtgcgccggtgcgcgcg 71 |||||||||||||||||||| Sbjct: 1121 aaggtgcgccggtgcgcgcg 1102
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 gcgccgccgcgacccgcgca 145 |||||||||||||||||||| Sbjct: 1240575 gcgccgccgcgacccgcgca 1240556
>dbj|AB169411.1| Macaca fascicularis testis cDNA, clone: QtsA-19884, similar to human nuclear receptor subfamily 1, group I, member 2 (NR1I2),transcript variant 1, mRNA, RefSeq: NM_003889.2 Length = 1939 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 ccagcactccagccccagga 370 |||||||||||||||||||| Sbjct: 1372 ccagcactccagccccagga 1353
>dbj|AB168700.1| Macaca fascicularis testis cDNA clone: QtsA-14244, similar to human nuclear receptor subfamily 1, group I, member 2 (NR1I2),transcript variant 1, mRNA, RefSeq: NM_003889.2 Length = 1659 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 ccagcactccagccccagga 370 |||||||||||||||||||| Sbjct: 1105 ccagcactccagccccagga 1086
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 291 ctgccgccgccgcgtctgcttcttcgcc 318 ||||||||||||||||| |||| ||||| Sbjct: 1473425 ctgccgccgccgcgtctccttcatcgcc 1473452
>dbj|AK076143.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:2900089I03 product:hypothetical protein, full insert sequence Length = 1560 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 ccgcctgccgccgccgcgtc 306 |||||||||||||||||||| Sbjct: 622 ccgcctgccgccgccgcgtc 603
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 gggagaaggcgcgccgccgc 135 |||||||||||||||||||| Sbjct: 5502066 gggagaaggcgcgccgccgc 5502085
>gb|AE009678.1| Brucella melitensis 16M chromosome II, section 40 of 107 of the complete sequence Length = 12806 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 cgcgccgccgcgacccgcgc 144 |||||||||||||||||||| Sbjct: 4926 cgcgccgccgcgacccgcgc 4907
>gb|BC092517.1| Homo sapiens DNA (cytosine-5-)-methyltransferase 1, mRNA (cDNA clone MGC:104992 IMAGE:3077831), complete cds Length = 5246 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 ctgccgccgccgcgtctgct 310 |||||||||||||||||||| Sbjct: 4 ctgccgccgccgcgtctgct 23
>dbj|AP003218.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0021A09 Length = 127973 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 241 tggctccacccggcgcgctaccgcacgc 268 ||||| |||||| ||||||||||||||| Sbjct: 107625 tggctgcacccgtcgcgctaccgcacgc 107652
>dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0638D12 Length = 161277 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 241 tggctccacccggcgcgctaccgcacgc 268 ||||| |||||| ||||||||||||||| Sbjct: 18717 tggctgcacccgtcgcgctaccgcacgc 18744
>gb|AF202550.1|F202550S01 Homo sapiens DNA methyltransferase (DNMT1) gene, intron 1 Length = 2068 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 ctgccgccgccgcgtctgct 310 |||||||||||||||||||| Sbjct: 1682 ctgccgccgccgcgtctgct 1701
>gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence Length = 1162204 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 cgcgccgccgcgacccgcgc 144 |||||||||||||||||||| Sbjct: 348202 cgcgccgccgcgacccgcgc 348183
>dbj|AP005547.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1031_C12 Length = 157574 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 gggagaaggcgcgccgccgc 135 |||||||||||||||||||| Sbjct: 107905 gggagaaggcgcgccgccgc 107924
>dbj|AK110661.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-169-F02, full insert sequence Length = 981 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 241 tggctccacccggcgcgctaccgcacgc 268 ||||| |||||| ||||||||||||||| Sbjct: 404 tggctgcacccgtcgcgctaccgcacgc 431
>ref|NM_212258.1| Eremothecium gossypii AFR575Cp (AFR575C), mRNA Length = 930 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 291 ctgccgccgccgcgtctgcttcttcgcc 318 ||||||||||||||||| |||| ||||| Sbjct: 414 ctgccgccgccgcgtctccttcatcgcc 387
>gb|AF033033.2|AF033033 Homo sapiens TIRC7 protein (TCIRG1) gene, complete cds Length = 12234 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 cagcactccagccccaggag 371 |||||||||||||||||||| Sbjct: 10960 cagcactccagccccaggag 10941
>emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II, complete sequence, strain 2308 Length = 1156948 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 cgcgccgccgcgacccgcgc 144 |||||||||||||||||||| Sbjct: 348271 cgcgccgccgcgacccgcgc 348252
>emb|X63692.1|HSDNMTASE H.sapiens mRNA for DNA (cytosin-5)-methyltransferase Length = 5434 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 ctgccgccgccgcgtctgct 310 |||||||||||||||||||| Sbjct: 206 ctgccgccgccgcgtctgct 225
>dbj|AP002807.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-802E16, complete sequences Length = 63433 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 cagcactccagccccaggag 371 |||||||||||||||||||| Sbjct: 21348 cagcactccagccccaggag 21329 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,578,893 Number of Sequences: 3902068 Number of extensions: 3578893 Number of successful extensions: 64413 Number of sequences better than 10.0: 94 Number of HSP's better than 10.0 without gapping: 101 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62290 Number of HSP's gapped (non-prelim): 2115 length of query: 439 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 417 effective length of database: 17,147,199,772 effective search space: 7150382304924 effective search space used: 7150382304924 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
