ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet41a06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY005800.2| Rhodovulum sulfidophilum sulfur compounds oxidation operon, complete sequence; and SoxR (soxR) and SoxS (soxS) genes, complete cds Length = 10950 Score = 44.1 bits (22), Expect = 0.21 Identities = 25/26 (96%) Strand = Plus / Minus Query: 221 cgccgccgcccacgaccaccacccgc 246 |||||||||||| ||||||||||||| Sbjct: 9684 cgccgccgcccaggaccaccacccgc 9659
>ref|XM_524339.1| PREDICTED: Pan troglodytes similar to Ras-related protein R-Ras (p23) (LOC468955), mRNA Length = 657 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 220 ccgccgccgcccacgaccacca 241 |||||||||||||||||||||| Sbjct: 116 ccgccgccgcccacgaccacca 95
>ref|NM_006270.2| Homo sapiens related RAS viral (r-ras) oncogene homolog (RRAS), mRNA Length = 1017 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 220 ccgccgccgcccacgaccacca 241 |||||||||||||||||||||| Sbjct: 165 ccgccgccgcccacgaccacca 144
>gb|BC016318.1| Homo sapiens related RAS viral (r-ras) oncogene homolog, mRNA (cDNA clone MGC:22906 IMAGE:4073829), complete cds Length = 1017 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 220 ccgccgccgcccacgaccacca 241 |||||||||||||||||||||| Sbjct: 165 ccgccgccgcccacgaccacca 144
>gb|BC016286.1| Homo sapiens related RAS viral (r-ras) oncogene homolog, mRNA (cDNA clone MGC:9452 IMAGE:3910343), complete cds Length = 982 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 220 ccgccgccgcccacgaccacca 241 |||||||||||||||||||||| Sbjct: 140 ccgccgccgcccacgaccacca 119
>ref|XM_533617.2| PREDICTED: Canis familiaris similar to Ras-related protein R-Ras (p23) (LOC476413), mRNA Length = 943 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 220 ccgccgccgcccacgaccacca 241 |||||||||||||||||||||| Sbjct: 142 ccgccgccgcccacgaccacca 121
>gb|BC110229.1| Bos taurus similar to Ras-related protein R-Ras (p23), mRNA (cDNA clone MGC:134597 IMAGE:8061054), complete cds Length = 913 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 220 ccgccgccgcccacgaccacca 241 |||||||||||||||||||||| Sbjct: 138 ccgccgccgcccacgaccacca 117
>gb|AC123514.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0004B05, complete sequence Length = 121223 Score = 44.1 bits (22), Expect = 0.21 Identities = 28/30 (93%) Strand = Plus / Minus Query: 220 ccgccgccgcccacgaccaccacccgccgc 249 |||||||||||||| |||||| |||||||| Sbjct: 40983 ccgccgccgcccactaccaccgcccgccgc 40954
>gb|BT007475.1| Synthetic construct Homo sapiens related RAS viral (r-ras) oncogene homolog mRNA, partial cds Length = 657 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 220 ccgccgccgcccacgaccacca 241 |||||||||||||||||||||| Sbjct: 116 ccgccgccgcccacgaccacca 95
>gb|BT006805.1| Homo sapiens related RAS viral (r-ras) oncogene homolog mRNA, complete cds Length = 657 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 220 ccgccgccgcccacgaccacca 241 |||||||||||||||||||||| Sbjct: 116 ccgccgccgcccacgaccacca 95
>gb|AC011495.8| Homo sapiens chromosome 19 clone CTB-33G10, complete sequence Length = 209844 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 220 ccgccgccgcccacgaccacca 241 |||||||||||||||||||||| Sbjct: 65793 ccgccgccgcccacgaccacca 65814
>gb|AF493920.1| Homo sapiens Ras family small GTP binding protein R-Ras (RRAS) mRNA, complete cds Length = 657 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 220 ccgccgccgcccacgaccacca 241 |||||||||||||||||||||| Sbjct: 116 ccgccgccgcccacgaccacca 95
>emb|CR541967.1| Homo sapiens full open reading frame cDNA clone RZPDo834E0934D for gene RRAS, related RAS viral (r-ras) oncogene homolog; complete cds, without stopcodon Length = 654 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 220 ccgccgccgcccacgaccacca 241 |||||||||||||||||||||| Sbjct: 116 ccgccgccgcccacgaccacca 95
>emb|CR541944.1| Homo sapiens full open reading frame cDNA clone RZPDo834A1034D for gene RRAS, related RAS viral (r-ras) oncogene homolog; complete cds, incl. stopcodon Length = 657 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 220 ccgccgccgcccacgaccacca 241 |||||||||||||||||||||| Sbjct: 116 ccgccgccgcccacgaccacca 95
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.21 Identities = 28/30 (93%) Strand = Plus / Minus Query: 220 ccgccgccgcccacgaccaccacccgccgc 249 |||||||||||||| |||||| |||||||| Sbjct: 762690 ccgccgccgcccactaccaccgcccgccgc 762661
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.21 Identities = 25/26 (96%) Strand = Plus / Minus Query: 221 cgccgccgcccacgaccaccacccgc 246 |||||||||||||||| ||||||||| Sbjct: 1924618 cgccgccgcccacgacgaccacccgc 1924593
>gb|AY891609.1| Synthetic construct Homo sapiens clone FLH015465.01L related RAS viral oncogene-like (RRAS) mRNA, partial cds Length = 657 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 220 ccgccgccgcccacgaccacca 241 |||||||||||||||||||||| Sbjct: 116 ccgccgccgcccacgaccacca 95
>gb|AY891608.1| Synthetic construct Homo sapiens clone FLH015464.01L related RAS viral oncogene-like (RRAS) mRNA, partial cds Length = 657 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 220 ccgccgccgcccacgaccacca 241 |||||||||||||||||||||| Sbjct: 116 ccgccgccgcccacgaccacca 95
>gb|AY889021.1| Synthetic construct Homo sapiens clone FLH015469.01X related RAS viral oncogene-like (RRAS) mRNA, complete cds Length = 657 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 220 ccgccgccgcccacgaccacca 241 |||||||||||||||||||||| Sbjct: 116 ccgccgccgcccacgaccacca 95
>gb|AY893616.1| Synthetic construct Homo sapiens clone FLH131303.01X related RAS viral oncogene-like (RRAS) mRNA, complete cds Length = 657 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 220 ccgccgccgcccacgaccacca 241 |||||||||||||||||||||| Sbjct: 116 ccgccgccgcccacgaccacca 95
>emb|BX005039.11| Mouse DNA sequence from clone RP23-391M18 on chromosome 2, complete sequence Length = 145263 Score = 44.1 bits (22), Expect = 0.21 Identities = 25/26 (96%) Strand = Plus / Plus Query: 57 ccccttcccccgtccccgctcctcca 82 ||||||||||| |||||||||||||| Sbjct: 88645 ccccttcccccctccccgctcctcca 88670
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib Length = 2013089 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 108 cgggatcccttccgaaacggct 129 |||||||||||||||||||||| Sbjct: 667536 cgggatcccttccgaaacggct 667515
>ref|NM_001038688.1| Bos taurus similar to Ras-related protein R-Ras (p23) (MGC134597), mRNA Length = 913 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 220 ccgccgccgcccacgaccacca 241 |||||||||||||||||||||| Sbjct: 138 ccgccgccgcccacgaccacca 117
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.21 Identities = 28/30 (93%) Strand = Plus / Minus Query: 220 ccgccgccgcccacgaccaccacccgccgc 249 |||||||||||||| |||||| |||||||| Sbjct: 762692 ccgccgccgcccactaccaccgcccgccgc 762663
>gb|M14948.1|HUMRASR1 Human R-ras gene, exon 1 Length = 2336 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 220 ccgccgccgcccacgaccacca 241 |||||||||||||||||||||| Sbjct: 1136 ccgccgccgcccacgaccacca 1115
>gb|AC017000.5| Homo sapiens BAC clone RP11-42B7 from 7, complete sequence Length = 154844 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 57 ccccttcccccgtccccgctcctcc 81 |||||||||||| |||||||||||| Sbjct: 99491 ccccttcccccgcccccgctcctcc 99515
>emb|AL591901.12| Human DNA sequence from clone RP11-400C4 on chromosome 1, complete sequence Length = 129844 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 27 cctccacttggcagcagagct 47 ||||||||||||||||||||| Sbjct: 83581 cctccacttggcagcagagct 83561
>gb|DQ058607.1| Bos taurus peroxisomal N1-acetyl-spermine/spermidine oxidase mRNA, complete cds Length = 1810 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Minus Query: 222 gccgccgcccacgaccaccacccgc 246 ||||||||||||||||| ||||||| Sbjct: 69 gccgccgcccacgaccagcacccgc 45
>gb|DQ058602.1| Bos taurus peroxisomal N1-acetyl-spermine/spermidine oxidase isoform 1 gene, complete cds Length = 8230 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Minus Query: 222 gccgccgcccacgaccaccacccgc 246 ||||||||||||||||| ||||||| Sbjct: 69 gccgccgcccacgaccagcacccgc 45
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 226 ccgcccacgaccaccacccgccgcc 250 |||||||| |||||||||||||||| Sbjct: 1560760 ccgcccaccaccaccacccgccgcc 1560784
>gb|AC004952.2|AC004952 Homo sapiens PAC clone RP5-1032D7 from 7p22, complete sequence Length = 137057 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Minus Query: 57 ccccttcccccgtccccgctcctcc 81 |||||||||||| |||||||||||| Sbjct: 42072 ccccttcccccgcccccgctcctcc 42048
>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0576F08 Length = 135314 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 226 ccgcccacgaccaccacccgccgcc 250 |||||||| |||||||||||||||| Sbjct: 124181 ccgcccaccaccaccacccgccgcc 124205
>ref|NM_197806.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0057L21.14), mRNA Length = 879 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 220 ccgccgccgcccacgaccaccacc 243 |||||||||||||| ||||||||| Sbjct: 242 ccgccgccgcccaccaccaccacc 265
>gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01, complete sequence Length = 146303 Score = 40.1 bits (20), Expect = 3.3 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 220 ccgccgccgc-ccacgaccaccacccgccgcc 250 |||||||||| |||| |||||||||||||||| Sbjct: 4912 ccgccgccgcaccaccaccaccacccgccgcc 4881
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 ccgccgcccacgaccaccac 242 |||||||||||||||||||| Sbjct: 2459724 ccgccgcccacgaccaccac 2459705
>ref|XM_426847.1| PREDICTED: Gallus gallus similar to glucocorticoid modulatory element binding protein 1 isoform 2 (LOC429291), partial mRNA Length = 707 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 tggcagcagagctcaacagc 54 |||||||||||||||||||| Sbjct: 414 tggcagcagagctcaacagc 395
>ref|XM_708590.1| Candida albicans SC5314 hypothetical protein (CaO19.8635), mRNA Length = 1788 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 accaccaccttcattcttta 198 |||||||||||||||||||| Sbjct: 1527 accaccaccttcattcttta 1508
>ref|XM_708545.1| Candida albicans SC5314 hypothetical protein (CaO19.1033), mRNA Length = 1788 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 accaccaccttcattcttta 198 |||||||||||||||||||| Sbjct: 1527 accaccaccttcattcttta 1508
>gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092G21, complete sequence Length = 151267 Score = 40.1 bits (20), Expect = 3.3 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 220 ccgccgccgc-ccacgaccaccacccgccgcc 250 |||||||||| |||| |||||||||||||||| Sbjct: 122734 ccgccgccgcaccaccaccaccacccgccgcc 122703
>gb|AC146607.2| Mus musculus BAC clone RP23-209N19 from chromosome 3, complete sequence Length = 173758 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 cctccagccttcccttcctc 96 |||||||||||||||||||| Sbjct: 9941 cctccagccttcccttcctc 9960
>gb|AC117196.3| Mus musculus BAC clone RP23-108H19 from 8, complete sequence Length = 185947 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 cctccagccttcccttcctc 96 |||||||||||||||||||| Sbjct: 152363 cctccagccttcccttcctc 152382
>gb|AC128862.4| Rattus norvegicus 4 BAC CH230-419L6 (Children's Hospital Oakland Research Institute) complete sequence Length = 184149 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cttccccttcccccgtcccc 73 |||||||||||||||||||| Sbjct: 163039 cttccccttcccccgtcccc 163058
>gb|DQ142778.1| Uncultured bacterium clone EENDU3-15 NifH (nifH) gene, partial cds Length = 331 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 cctccacttggcagcagagc 46 |||||||||||||||||||| Sbjct: 35 cctccacttggcagcagagc 54
>gb|DQ142883.1| Uncultured bacterium clone EENRU-82 NifH (nifH) mRNA, partial cds Length = 332 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 cctccacttggcagcagagc 46 |||||||||||||||||||| Sbjct: 36 cctccacttggcagcagagc 55
>gb|DQ142881.1| Uncultured bacterium clone EENRU-80 NifH (nifH) mRNA, partial cds Length = 332 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 cctccacttggcagcagagc 46 |||||||||||||||||||| Sbjct: 36 cctccacttggcagcagagc 55
>gb|DQ142879.1| Uncultured bacterium clone EENRU-78 NifH (nifH) mRNA, partial cds Length = 332 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 cctccacttggcagcagagc 46 |||||||||||||||||||| Sbjct: 36 cctccacttggcagcagagc 55
>gb|DQ142835.1| Uncultured bacterium clone EENRU-34 NifH (nifH) mRNA, partial cds Length = 334 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 cctccacttggcagcagagc 46 |||||||||||||||||||| Sbjct: 38 cctccacttggcagcagagc 57
>emb|CR974413.1| M.murinus DNA sequence from clone CH257-4B4, complete sequence Length = 270722 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 182 accaccttcattctttacagatcc 205 |||||| ||||||||||||||||| Sbjct: 64341 accaccatcattctttacagatcc 64318
>emb|AL355506.23| Human DNA sequence from clone RP3-366M24 on chromosome 6q25.3-26 Contains the 5' end of the SLC22A3 gene for solute carrier family 22 (extraneuronal monoamine transporter), member 3 (extraneuronal monoamine transporter solute carrier family 22 (organic cation transporter), member 3 (EMT, EMTh, OCT3)) and a CpG island, complete sequence Length = 82919 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 53 gcttccccttcccccgtccccgctcctc 80 ||||||||||||||| |||||| ||||| Sbjct: 82295 gcttccccttcccccttccccgttcctc 82268
>emb|AL162582.30| Human DNA sequence from clone RP1-276N6 on chromosome 6 Contains the 5' end of the SLC22A2 gene for solute carrier family 22 (organic cation transporter), member 2 (OCT2) and a novel gene, complete sequence Length = 85786 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 53 gcttccccttcccccgtccccgctcctc 80 ||||||||||||||| |||||| ||||| Sbjct: 84411 gcttccccttcccccttccccgttcctc 84438
>emb|AL136528.11| Human DNA sequence from clone RP5-1092A11 on chromosome 1p36.2-36.33 Contains the 5' end of the gene for a novel protein (FLJ32825), a novel gene (KIAA0495), two novel genes, the TP73 gene for tumor protein p73, the 5' end of the WDR8 gene for WD repeat domain 8 and five CpG islands, complete sequence Length = 138941 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 gccttcccttcctcgtgagg 102 |||||||||||||||||||| Sbjct: 126084 gccttcccttcctcgtgagg 126103
>emb|BX842579.1| Mycobacterium tuberculosis H37Rv complete genome; segment 8/13 Length = 348247 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 ccgccgcccacgaccaccac 242 |||||||||||||||||||| Sbjct: 37608 ccgccgcccacgaccaccac 37589
>emb|BX248341.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 8/14 Length = 306050 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 ccgccgcccacgaccaccac 242 |||||||||||||||||||| Sbjct: 236594 ccgccgcccacgaccaccac 236575
>gb|AC018861.9| Homo sapiens chromosome 8, clone RP11-577N1, complete sequence Length = 187047 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 gaccaccaccttcattcttt 197 |||||||||||||||||||| Sbjct: 108622 gaccaccaccttcattcttt 108641
>gb|AC087599.14| Oryza sativa chromosome 10 BAC OSJNBa0057L21 genomic sequence, complete sequence Length = 183046 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 220 ccgccgccgcccacgaccaccacc 243 |||||||||||||| ||||||||| Sbjct: 29042 ccgccgccgcccaccaccaccacc 29065
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 221 cgccgccgcccacgaccaccacccgccgcctc 252 |||||||||| ||||| || |||||||||||| Sbjct: 27125316 cgccgccgccgacgacgacgacccgccgcctc 27125285 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 220 ccgccgccgcccacgaccaccacc 243 |||||||||||||| ||||||||| Sbjct: 417413 ccgccgccgcccaccaccaccacc 417436
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 220 ccgccgccgcccacgaccaccacc 243 |||||||||||||| ||||||||| Sbjct: 21979279 ccgccgccgcccaccaccaccacc 21979256
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 3.3 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 220 ccgccgccgc-ccacgaccaccacccgccgcc 250 |||||||||| |||| |||||||||||||||| Sbjct: 19200836 ccgccgccgcaccaccaccaccacccgccgcc 19200805
>dbj|AK105119.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-B03, full insert sequence Length = 1251 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 220 ccgccgccgcccacgaccaccacc 243 |||||||||||||| ||||||||| Sbjct: 323 ccgccgccgcccaccaccaccacc 346
>gb|AC152831.2| Ornithorhynchus anatinus chromosome UNK clone OABb-168A1, complete sequence Length = 139370 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 220 ccgccgccgcccacgaccaccacc 243 |||||||||||||| ||||||||| Sbjct: 100022 ccgccgccgcccaccaccaccacc 99999
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 ccacgaccaccacccgccgc 249 |||||||||||||||||||| Sbjct: 1077694 ccacgaccaccacccgccgc 1077675
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 220 ccgccgccgcccacgaccaccacc 243 |||||||||||||| ||||||||| Sbjct: 21990942 ccgccgccgcccaccaccaccacc 21990919
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 221 cgccgccgcccacgaccaccacccgccgcctc 252 |||||||||| ||||| || |||||||||||| Sbjct: 27050913 cgccgccgccgacgacgacgacccgccgcctc 27050882 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 220 ccgccgccgcccacgaccaccacc 243 |||||||||||||| ||||||||| Sbjct: 417413 ccgccgccgcccaccaccaccacc 417436
>emb|AL713905.6|CNS07YQ5 Oryza sativa chromosome 12, . BAC OJ1584_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131300 Score = 40.1 bits (20), Expect = 3.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 221 cgccgccgcccacgaccaccacccgccgcctc 252 |||||||||| ||||| || |||||||||||| Sbjct: 30921 cgccgccgccgacgacgacgacccgccgcctc 30952
>emb|AL731887.5|CNS08C8R Oryza sativa chromosome 12, . BAC OJ1559_C07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145816 Score = 40.1 bits (20), Expect = 3.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 221 cgccgccgcccacgaccaccacccgccgcctc 252 |||||||||| ||||| || |||||||||||| Sbjct: 64212 cgccgccgccgacgacgacgacccgccgcctc 64181
>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152222 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 220 ccgccgccgcccacgaccaccacc 243 |||||||||||||| ||||||||| Sbjct: 150464 ccgccgccgcccaccaccaccacc 150487
>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141089 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 220 ccgccgccgcccacgaccaccacc 243 |||||||||||||| ||||||||| Sbjct: 129359 ccgccgccgcccaccaccaccacc 129336
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 cgccgccgcccacgaccacc 240 |||||||||||||||||||| Sbjct: 139294 cgccgccgcccacgaccacc 139313 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,393,063 Number of Sequences: 3902068 Number of extensions: 2393063 Number of successful extensions: 47044 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 46506 Number of HSP's gapped (non-prelim): 542 length of query: 255 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 233 effective length of database: 17,147,199,772 effective search space: 3995297546876 effective search space used: 3995297546876 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
