>NIR_MAIZE (P17847) Ferredoxin--nitrite reductase, chloroplast precursor (EC|
           1.7.7.1) (Fragment)
          Length = 569

 Score =  110 bits (275), Expect = 1e-24
 Identities = 53/63 (84%), Positives = 56/63 (88%)
 Frame = +3

Query: 234 ERLEPRVEQREGGYWVLKEKYRTSLNPQEKVKLGKEPMALFTEGGINDLAKLPMEQIDAD 413
           ERLEPRVE+R GGYWVLKEKYR  LNPQEKVKL KEPMALF EGGI DLA++PMEQIDA 
Sbjct: 25  ERLEPRVEERAGGYWVLKEKYRAGLNPQEKVKLEKEPMALFMEGGIQDLARVPMEQIDAA 84

Query: 414 KLT 422
           KLT
Sbjct: 85  KLT 87

>NIR_BETVE (P38500) Ferredoxin--nitrite reductase, chloroplast precursor (EC|
           1.7.7.1)
          Length = 583

 Score = 92.0 bits (227), Expect = 5e-19
 Identities = 43/62 (69%), Positives = 53/62 (85%)
 Frame = +3

Query: 237 RLEPRVEQREGGYWVLKEKYRTSLNPQEKVKLGKEPMALFTEGGINDLAKLPMEQIDADK 416
           RLEPRVE+REG YWVLKEK+R  +NPQEK+KL +EPM LF EGGI DLAK+ +E+ID DK
Sbjct: 42  RLEPRVEEREG-YWVLKEKFREGINPQEKLKLEREPMKLFMEGGIEDLAKMSLEEIDKDK 100

Query: 417 LT 422
           ++
Sbjct: 101 IS 102

>NIR_SPIOL (P05314) Ferredoxin--nitrite reductase, chloroplast precursor (EC|
           1.7.7.1)
          Length = 594

 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 37/60 (61%), Positives = 49/60 (81%)
 Frame = +3

Query: 237 RLEPRVEQREGGYWVLKEKYRTSLNPQEKVKLGKEPMALFTEGGINDLAKLPMEQIDADK 416
           RLEPRVE+R+G +WVLKE++R+ +NP EKVK+ K+PM LF E GI+DLA L ME++D  K
Sbjct: 54  RLEPRVEERDG-FWVLKEEFRSGINPAEKVKIEKDPMKLFIEDGISDLATLSMEEVDKSK 112

>NIR_ARATH (Q39161) Ferredoxin--nitrite reductase, chloroplast precursor (EC|
           1.7.7.1) (NiR)
          Length = 586

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 35/61 (57%), Positives = 50/61 (81%)
 Frame = +3

Query: 234 ERLEPRVEQREGGYWVLKEKYRTSLNPQEKVKLGKEPMALFTEGGINDLAKLPMEQIDAD 413
           +RLEPRVE ++G +++LKEK+R  +NPQEKVK+ +EPM LF E GI +LAK  ME++D++
Sbjct: 44  DRLEPRVELKDG-FFILKEKFRKGINPQEKVKIEREPMKLFMENGIEELAKKSMEELDSE 102

Query: 414 K 416
           K
Sbjct: 103 K 103

>DP2L_PYRFU (P81409) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)|
           (DP2)
          Length = 1263

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 237 RLEPRVEQREGGYWVLKEKYRTSLNPQEK 323
           ++E RVE  +G Y+ L EK+R  + P EK
Sbjct: 299 KVETRVEVEKGFYYKLYEKFRAEIAPSEK 327

>OXAA1_BACSU (Q01625) Membrane protein oxaA 1 precursor|
          Length = 261

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = +3

Query: 282 LKEKYRTSLNPQEKVKLGKEPMALFTEGGINDLA 383
           LKEKY +S + + + KL +E MALF + G+N LA
Sbjct: 100 LKEKY-SSKDQKTQQKLQQETMALFQKHGVNPLA 132

>NAGB_BACCR (Q819D1) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)|
           (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P
           deaminase)
          Length = 262

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +3

Query: 255 EQREGGYWVLKEKYRTSLNPQEKVKLGKEPMALFTEGGINDLAKLPMEQIDADK 416
           E  E GY +++E  +T  NP   +  G  P+ ++ E   N L    +  ++ D+
Sbjct: 11  ELAEAGYKLIEEVVKTKENPTLGMATGSSPLGIYAEMRKNKLDTSRVTTVNLDE 64

>NAGB_BACAN (Q81MH5) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)|
           (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P
           deaminase)
          Length = 262

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +3

Query: 255 EQREGGYWVLKEKYRTSLNPQEKVKLGKEPMALFTEGGINDLAKLPMEQIDADK 416
           E  E GY +++E  +T  NP   +  G  P+ ++ E   N L    +  ++ D+
Sbjct: 11  ELAEAGYKLIEEVVKTKENPTLGMATGSSPLGIYAEMRKNKLDTSRVTTVNLDE 64

>OXAA1_BACHD (Q9RCA5) Membrane protein oxaA 1 precursor|
          Length = 257

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/34 (44%), Positives = 24/34 (70%)
 Frame = +3

Query: 282 LKEKYRTSLNPQEKVKLGKEPMALFTEGGINDLA 383
           L+EKY ++ + + + KL +E MALF + G+N LA
Sbjct: 98  LREKY-SAKDQRTQQKLQQETMALFQKHGVNPLA 130


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.308    0.118    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,241,952
Number of Sequences: 219361
Number of extensions: 302469
Number of successful extensions: 841
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)