Clone Information

BLAST Search Result

Clone Name	baet40h10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_193984.1\| Oryza sativa (japonica cultivar-group), predic...	230	3e-57
2	dbj\|AK061893.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	230	3e-57
3	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	230	3e-57
4	dbj\|AP003312.3\| Oryza sativa (japonica cultivar-group) genomic D...	230	3e-57
5	dbj\|D50556.1\|RICFNR Rice mRNA for ferredoxin-nitrite reductase, ...	230	3e-57
6	dbj\|AK103604.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	222	7e-55
7	gb\|M23456.1\|MZENIRE Zea mays (clone pCIB808) encoding maize nitr...	204	2e-49
8	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	190	3e-45
9	dbj\|AP004817.3\| Oryza sativa (japonica cultivar-group) genomic D...	190	3e-45
10	dbj\|AP003275.2\| Oryza sativa (japonica cultivar-group) genomic D...	190	3e-45
11	dbj\|AP005287.3\| Oryza sativa (japonica cultivar-group) genomic D...	190	3e-45
12	ref\|NM_193986.1\| Oryza sativa (japonica cultivar-group), predic...	165	1e-37
13	gb\|AY109418.1\| Zea mays CL2386_1 mRNA sequence	155	1e-34
14	gb\|AC091248.6\| Mus musculus Strain C57BL6/J chromosome 1 BAC, RP...	44	0.36
15	ref\|XM_464420.1\| Oryza sativa (japonica cultivar-group), mRNA	42	1.4
16	gb\|AC110534.11\| Mus musculus chromosome 17, clone RP23-174D11, c...	42	1.4
17	gb\|CP000317.1\| Polaromonas sp. JS666 plasmid 1, complete sequence	42	1.4
18	dbj\|AK037865.1\| Mus musculus 16 days neonate thymus cDNA, RIKEN ...	42	1.4
19	dbj\|AP005785.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.4
20	emb\|AJ322963.1\|HSA322963 Homo sapiens genomic sequence surroundi...	42	1.4
21	emb\|AL646053.1\| Ralstonia solanacearum GMI1000 megaplasmid compl...	42	1.4
22	dbj\|AK063218.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.4
23	gb\|AE016825.1\| Chromobacterium violaceum ATCC 12472, complete ge...	42	1.4
24	gb\|AC145207.2\| Homo sapiens chromosome 17, clone RP11-498C9, com...	42	1.4
25	ref\|NM_197747.1\| Oryza sativa (japonica cultivar-group) putative...	40	5.7
26	gb\|AF528822.1\| Aspergillus parasiticus oleate delta-12 desaturas...	40	5.7
27	ref\|XM_417548.1\| PREDICTED: Gallus gallus similar to MEGF6 (LOC4...	40	5.7
28	gb\|AC166557.2\| Spironucleus vortens clone JGIBAWF-5F7, complete ...	40	5.7
29	ref\|XM_846110.1\| PREDICTED: Canis familiaris similar to Golgi au...	40	5.7
30	gb\|AF496056.1\| Lactobacillus delbrueckii subsp. lactis abc trans...	40	5.7
31	emb\|AL691458.7\| Human DNA sequence from clone RP11-13F15 on chro...	40	5.7
32	emb\|BX571966.1\| Burkholderia pseudomallei strain K96243, chromos...	40	5.7
33	gb\|AC079874.21\| Oryza sativa chromosome 10 BAC OSJNBa0042H09 gen...	40	5.7
34	gb\|CP000264.1\| Jannaschia sp. CCS1, complete genome	40	5.7
35	ref\|XM_686059.1\| PREDICTED: Danio rerio similar to kalirin, RhoG...	40	5.7
36	gb\|AC079890.13\| Oryza sativa chromosome 10 BAC OSJNBb0089A17 gen...	40	5.7
37	gb\|AE017285.1\| Desulfovibrio vulgaris subsp. vulgaris str. Hilde...	40	5.7
38	gb\|CP000011.2\| Burkholderia mallei ATCC 23344 chromosome 2, comp...	40	5.7
39	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.7
40	emb\|BX119909.5\| Zebrafish DNA sequence from clone CH211-223I3 in...	40	5.7
41	dbj\|AK068343.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	5.7
42	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.7
43	dbj\|AP006135.1\| Lotus japonicus genomic DNA, chromosome 1, clone...	40	5.7
44	gb\|AE014295.3\| Bifidobacterium longum NCC2705, complete genome	40	5.7

>ref|NM_193984.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1791

 Score =  230 bits (116), Expect = 3e-57
 Identities = 170/188 (90%)
 Strand = Plus / Plus

                                                                       
Query: 232 cggagcggctggagccgcgggtggagcagcgggagggcggctactgggtgctcaaggaga 291
           |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 158 cggagcggctggagccgcgggtggagcagcgggagggccggtactgggtgctcaaggaga 217

                                                                       
Query: 292 agtaccgcaccagcctgaacccgcaggagaaggtgaagctgggcaaggagcccatggcgc 351
           ||||||| ||  | ||||||||||||||||||||||||||||| |||||||||||| |  
Sbjct: 218 agtaccggacggggctgaacccgcaggagaaggtgaagctggggaaggagcccatgtcat 277

                                                                       
Query: 352 tcttcaccgagggcggcatcaacgacctcgccaagctgcccatggagcagatcgacgccg 411
           | ||||  |||||||||||||| || ||||||||| ||||||||||| ||||||| ||||
Sbjct: 278 tgttcatggagggcggcatcaaggagctcgccaagatgcccatggaggagatcgaggccg 337

                   
Query: 412 acaagctc 419
           ||||||||
Sbjct: 338 acaagctc 345



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 66  atggcgtcctcggcctccctgcagagcttcctccc 100
           ||||| ||||| |||||||||||| ||||||||||
Sbjct: 1   atggcctcctccgcctccctgcagcgcttcctccc 35

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>dbj|AK061893.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-G06, full
           insert sequence
          Length = 2137

 Score =  230 bits (116), Expect = 3e-57
 Identities = 170/188 (90%)
 Strand = Plus / Plus

                                                                       
Query: 232 cggagcggctggagccgcgggtggagcagcgggagggcggctactgggtgctcaaggaga 291
           |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 214 cggagcggctggagccgcgggtggagcagcgggagggccggtactgggtgctcaaggaga 273

                                                                       
Query: 292 agtaccgcaccagcctgaacccgcaggagaaggtgaagctgggcaaggagcccatggcgc 351
           ||||||| ||  | ||||||||||||||||||||||||||||| |||||||||||| |  
Sbjct: 274 agtaccggacggggctgaacccgcaggagaaggtgaagctggggaaggagcccatgtcat 333

                                                                       
Query: 352 tcttcaccgagggcggcatcaacgacctcgccaagctgcccatggagcagatcgacgccg 411
           | ||||  |||||||||||||| || ||||||||| ||||||||||| ||||||| ||||
Sbjct: 334 tgttcatggagggcggcatcaaggagctcgccaagatgcccatggaggagatcgaggccg 393

                   
Query: 412 acaagctc 419
           ||||||||
Sbjct: 394 acaagctc 401



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 64  ccatggcgtcctcggcctccctgcagagcttcctccc 100
           ||||||| ||||| |||||||||||| ||||||||||
Sbjct: 55  ccatggcctcctccgcctccctgcagcgcttcctccc 91

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  230 bits (116), Expect = 3e-57
 Identities = 170/188 (90%)
 Strand = Plus / Plus

                                                                            
Query: 232      cggagcggctggagccgcgggtggagcagcgggagggcggctactgggtgctcaaggaga 291
                |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 14430463 cggagcggctggagccgcgggtggagcagcgggagggccggtactgggtgctcaaggaga 14430522

                                                                            
Query: 292      agtaccgcaccagcctgaacccgcaggagaaggtgaagctgggcaaggagcccatggcgc 351
                ||||||| ||  | ||||||||||||||||||||||||||||| |||||||||||| |  
Sbjct: 14430523 agtaccggacggggctgaacccgcaggagaaggtgaagctggggaaggagcccatgtcat 14430582

                                                                            
Query: 352      tcttcaccgagggcggcatcaacgacctcgccaagctgcccatggagcagatcgacgccg 411
                | ||||  |||||||||||||| || ||||||||| ||||||||||| ||||||| ||||
Sbjct: 14430583 tgttcatggagggcggcatcaaggagctcgccaagatgcccatggaggagatcgaggccg 14430642

                        
Query: 412      acaagctc 419
                ||||||||
Sbjct: 14430643 acaagctc 14430650



 Score =  190 bits (96), Expect = 3e-45
 Identities = 165/188 (87%)
 Strand = Plus / Plus

                                                                            
Query: 232      cggagcggctggagccgcgggtggagcagcgggagggcggctactgggtgctcaaggaga 291
                |||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 14445404 cggagcggctggagccacgggtggagcagcgggagggccgatactgggtgctcaaggaga 14445463

                                                                            
Query: 292      agtaccgcaccagcctgaacccgcaggagaaggtgaagctgggcaaggagcccatggcgc 351
                ||||||   |  | ||||||||| |||||||||||||||| || |||||||||||| |  
Sbjct: 14445464 agtaccaggctgggctgaacccgtaggagaaggtgaagctcgggaaggagcccatgtcat 14445523

                                                                            
Query: 352      tcttcaccgagggcggcatcaacgacctcgccaagctgcccatggagcagatcgacgccg 411
                | ||||  |||||||||||||| || ||||||||| ||||||||||| ||||||| ||||
Sbjct: 14445524 tgttcatggagggcggcatcaaggagctcgccaagatgcccatggaggagatcgaggccg 14445583

                        
Query: 412      acaagctc 419
                ||||||||
Sbjct: 14445584 acaagctc 14445591



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 64       ccatggcgtcctcggcctccctgcagagcttcctccc 100
                ||||||| ||||| |||||||||||| ||||||||||
Sbjct: 14430304 ccatggcctcctccgcctccctgcagcgcttcctccc 14430340



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                     
Query: 64       ccatggcgtcctcggcctccctgcagagcttcctccc 100
                ||||||| |||||  ||||||||||| ||||||||||
Sbjct: 14445238 ccatggcctcctctacctccctgcagcgcttcctccc 14445274

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>dbj|AP003312.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0025H06
          Length = 151547

 Score =  230 bits (116), Expect = 3e-57
 Identities = 170/188 (90%)
 Strand = Plus / Plus

                                                                         
Query: 232   cggagcggctggagccgcgggtggagcagcgggagggcggctactgggtgctcaaggaga 291
             |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 91860 cggagcggctggagccgcgggtggagcagcgggagggccggtactgggtgctcaaggaga 91919

                                                                         
Query: 292   agtaccgcaccagcctgaacccgcaggagaaggtgaagctgggcaaggagcccatggcgc 351
             ||||||| ||  | ||||||||||||||||||||||||||||| |||||||||||| |  
Sbjct: 91920 agtaccggacggggctgaacccgcaggagaaggtgaagctggggaaggagcccatgtcat 91979

                                                                         
Query: 352   tcttcaccgagggcggcatcaacgacctcgccaagctgcccatggagcagatcgacgccg 411
             | ||||  |||||||||||||| || ||||||||| ||||||||||| ||||||| ||||
Sbjct: 91980 tgttcatggagggcggcatcaaggagctcgccaagatgcccatggaggagatcgaggccg 92039

                     
Query: 412   acaagctc 419
             ||||||||
Sbjct: 92040 acaagctc 92047



 Score =  190 bits (96), Expect = 3e-45
 Identities = 165/188 (87%)
 Strand = Plus / Plus

                                                                          
Query: 232    cggagcggctggagccgcgggtggagcagcgggagggcggctactgggtgctcaaggaga 291
              |||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 106801 cggagcggctggagccacgggtggagcagcgggagggccgatactgggtgctcaaggaga 106860

                                                                          
Query: 292    agtaccgcaccagcctgaacccgcaggagaaggtgaagctgggcaaggagcccatggcgc 351
              ||||||   |  | ||||||||| |||||||||||||||| || |||||||||||| |  
Sbjct: 106861 agtaccaggctgggctgaacccgtaggagaaggtgaagctcgggaaggagcccatgtcat 106920

                                                                          
Query: 352    tcttcaccgagggcggcatcaacgacctcgccaagctgcccatggagcagatcgacgccg 411
              | ||||  |||||||||||||| || ||||||||| ||||||||||| ||||||| ||||
Sbjct: 106921 tgttcatggagggcggcatcaaggagctcgccaagatgcccatggaggagatcgaggccg 106980

                      
Query: 412    acaagctc 419
              ||||||||
Sbjct: 106981 acaagctc 106988



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 64    ccatggcgtcctcggcctccctgcagagcttcctccc 100
             ||||||| ||||| |||||||||||| ||||||||||
Sbjct: 91701 ccatggcctcctccgcctccctgcagcgcttcctccc 91737



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                   
Query: 64     ccatggcgtcctcggcctccctgcagagcttcctccc 100
              ||||||| |||||  ||||||||||| ||||||||||
Sbjct: 106635 ccatggcctcctctacctccctgcagcgcttcctccc 106671

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>dbj|D50556.1|RICFNR Rice mRNA for ferredoxin-nitrite reductase, complete cds
          Length = 2410

 Score =  230 bits (116), Expect = 3e-57
 Identities = 170/188 (90%)
 Strand = Plus / Plus

                                                                       
Query: 232 cggagcggctggagccgcgggtggagcagcgggagggcggctactgggtgctcaaggaga 291
           |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 202 cggagcggctggagccgcgggtggagcagcgggagggccggtactgggtgctcaaggaga 261

                                                                       
Query: 292 agtaccgcaccagcctgaacccgcaggagaaggtgaagctgggcaaggagcccatggcgc 351
           ||||||| ||  | ||||||||||||||||||||||||||||| |||||||||||| |  
Sbjct: 262 agtaccggacggggctgaacccgcaggagaaggtgaagctggggaaggagcccatgtcat 321

                                                                       
Query: 352 tcttcaccgagggcggcatcaacgacctcgccaagctgcccatggagcagatcgacgccg 411
           | ||||  |||||||||||||| || ||||||||| ||||||||||| ||||||| ||||
Sbjct: 322 tgttcatggagggcggcatcaaggagctcgccaagatgcccatggaggagatcgaggccg 381

                   
Query: 412 acaagctc 419
           ||||||||
Sbjct: 382 acaagctc 389



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 64  ccatggcgtcctcggcctccctgcagagcttcctccc 100
           ||||||| ||||| |||||||||||| ||||||||||
Sbjct: 43  ccatggcctcctccgcctccctgcagcgcttcctccc 79

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>dbj|AK103604.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133G10, full
           insert sequence
          Length = 2499

 Score =  222 bits (112), Expect = 7e-55
 Identities = 166/184 (90%)
 Strand = Plus / Plus

                                                                       
Query: 236 gcggctggagccgcgggtggagcagcgggagggcggctactgggtgctcaaggagaagta 295
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 679 gcggctggagccgcgggtggagcagcgggagggccggtactgggtgctcaaggagaagta 738

                                                                       
Query: 296 ccgcaccagcctgaacccgcaggagaaggtgaagctgggcaaggagcccatggcgctctt 355
           ||| ||  | ||||||||||||||||||||||||||||| |||||||||||| |  | ||
Sbjct: 739 ccggacggggctgaacccgcaggagaaggtgaagctggggaaggagcccatgtcattgtt 798

                                                                       
Query: 356 caccgagggcggcatcaacgacctcgccaagctgcccatggagcagatcgacgccgacaa 415
           ||  |||||||||||||| || ||||||||| ||||||||||| ||||||| ||||||||
Sbjct: 799 catggagggcggcatcaaggagctcgccaagatgcccatggaggagatcgaggccgacaa 858

               
Query: 416 gctc 419
           ||||
Sbjct: 859 gctc 862



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 64  ccatggcgtcctcggcctccctgcagagcttcctccc 100
           ||||||| ||||| |||||||||||| ||||||||||
Sbjct: 516 ccatggcctcctccgcctccctgcagcgcttcctccc 552

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>gb|M23456.1|MZENIRE Zea mays (clone pCIB808) encoding maize nitrite reductase (NiR)
           cDNA to mRNA, partial cds
          Length = 1813

 Score =  204 bits (103), Expect = 2e-49
 Identities = 175/199 (87%)
 Strand = Plus / Plus

                                                                       
Query: 225 gtcccgtcggagcggctggagccgcgggtggagcagcgggagggcggctactgggtgctc 284
           |||||| ||||||||||||||||| |||| ||| |||||| |||||| |||||||| |||
Sbjct: 58  gtcccgacggagcggctggagccgagggtcgaggagcgggcgggcgggtactgggtcctc 117

                                                                       
Query: 285 aaggagaagtaccgcaccagcctgaacccgcaggagaaggtgaagctgggcaaggagccc 344
           ||||||||||||||  |  | ||||||||||||||||||||||||||||  |||||||||
Sbjct: 118 aaggagaagtaccgggcggggctgaacccgcaggagaaggtgaagctggagaaggagccc 177

                                                                       
Query: 345 atggcgctcttcaccgagggcggcatcaacgacctcgccaagctgcccatggagcagatc 404
           |||||||| ||||  |||||||||||| | ||||| |||| | | |||||||||||||||
Sbjct: 178 atggcgctgttcatggagggcggcatccaggacctggccagggtccccatggagcagatc 237

                              
Query: 405 gacgccgacaagctcacca 423
           ||||||| |||||||||||
Sbjct: 238 gacgccgccaagctcacca 256

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  190 bits (96), Expect = 3e-45
 Identities = 165/188 (87%)
 Strand = Plus / Minus

                                                                            
Query: 232      cggagcggctggagccgcgggtggagcagcgggagggcggctactgggtgctcaaggaga 291
                ||||||||||||||||||||||||||||||| |||||  | |||| ||||||||||||||
Sbjct: 32275437 cggagcggctggagccgcgggtggagcagcgagaggggcggtactaggtgctcaaggaga 32275378

                                                                            
Query: 292      agtaccgcaccagcctgaacccgcaggagaaggtgaagctgggcaaggagcccatggcgc 351
                |||||||  |  | ||||||||| ||||||||||||||||||| |||||||||||  || 
Sbjct: 32275377 agtaccgggcagggctgaacccgtaggagaaggtgaagctggggaaggagcccatatcgt 32275318

                                                                            
Query: 352      tcttcaccgagggcggcatcaacgacctcgccaagctgcccatggagcagatcgacgccg 411
                | ||||  |||||||||||||| || ||||||||| ||||||||||| ||||||| ||||
Sbjct: 32275317 tgttcatggagggcggcatcaaggagctcgccaagatgcccatggaggagatcgaggccg 32275258

                        
Query: 412      acaagctc 419
                ||||||||
Sbjct: 32275257 acaagctc 32275250



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 113     cgcggcgacgtcgtcgtcccg 133
               |||||||||||||||||||||
Sbjct: 5079391 cgcggcgacgtcgtcgtcccg 5079371

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>dbj|AP004817.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0539D10
          Length = 158691

 Score =  190 bits (96), Expect = 3e-45
 Identities = 165/188 (87%)
 Strand = Plus / Minus

                                                                          
Query: 232    cggagcggctggagccgcgggtggagcagcgggagggcggctactgggtgctcaaggaga 291
              ||||||||||||||||||||||||||||||| |||||  | |||| ||||||||||||||
Sbjct: 119450 cggagcggctggagccgcgggtggagcagcgagaggggcggtactaggtgctcaaggaga 119391

                                                                          
Query: 292    agtaccgcaccagcctgaacccgcaggagaaggtgaagctgggcaaggagcccatggcgc 351
              |||||||  |  | ||||||||| ||||||||||||||||||| |||||||||||  || 
Sbjct: 119390 agtaccgggcagggctgaacccgtaggagaaggtgaagctggggaaggagcccatatcgt 119331

                                                                          
Query: 352    tcttcaccgagggcggcatcaacgacctcgccaagctgcccatggagcagatcgacgccg 411
              | ||||  |||||||||||||| || ||||||||| ||||||||||| ||||||| ||||
Sbjct: 119330 tgttcatggagggcggcatcaaggagctcgccaagatgcccatggaggagatcgaggccg 119271

                      
Query: 412    acaagctc 419
              ||||||||
Sbjct: 119270 acaagctc 119263

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>dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0514H03
          Length = 167230

 Score =  190 bits (96), Expect = 3e-45
 Identities = 165/188 (87%)
 Strand = Plus / Plus

                                                                        
Query: 232  cggagcggctggagccgcgggtggagcagcgggagggcggctactgggtgctcaaggaga 291
            |||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 4717 cggagcggctggagccacgggtggagcagcgggagggccgatactgggtgctcaaggaga 4776

                                                                        
Query: 292  agtaccgcaccagcctgaacccgcaggagaaggtgaagctgggcaaggagcccatggcgc 351
            ||||||   |  | ||||||||| |||||||||||||||| || |||||||||||| |  
Sbjct: 4777 agtaccaggctgggctgaacccgtaggagaaggtgaagctcgggaaggagcccatgtcat 4836

                                                                        
Query: 352  tcttcaccgagggcggcatcaacgacctcgccaagctgcccatggagcagatcgacgccg 411
            | ||||  |||||||||||||| || ||||||||| ||||||||||| ||||||| ||||
Sbjct: 4837 tgttcatggagggcggcatcaaggagctcgccaagatgcccatggaggagatcgaggccg 4896

                    
Query: 412  acaagctc 419
            ||||||||
Sbjct: 4897 acaagctc 4904



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                 
Query: 64   ccatggcgtcctcggcctccctgcagagcttcctccc 100
            ||||||| |||||  ||||||||||| ||||||||||
Sbjct: 4551 ccatggcctcctctacctccctgcagcgcttcctccc 4587

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>dbj|AP005287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1004_A11
          Length = 132352

 Score =  190 bits (96), Expect = 3e-45
 Identities = 165/188 (87%)
 Strand = Plus / Minus

                                                                         
Query: 232   cggagcggctggagccgcgggtggagcagcgggagggcggctactgggtgctcaaggaga 291
             ||||||||||||||||||||||||||||||| |||||  | |||| ||||||||||||||
Sbjct: 51269 cggagcggctggagccgcgggtggagcagcgagaggggcggtactaggtgctcaaggaga 51210

                                                                         
Query: 292   agtaccgcaccagcctgaacccgcaggagaaggtgaagctgggcaaggagcccatggcgc 351
             |||||||  |  | ||||||||| ||||||||||||||||||| |||||||||||  || 
Sbjct: 51209 agtaccgggcagggctgaacccgtaggagaaggtgaagctggggaaggagcccatatcgt 51150

                                                                         
Query: 352   tcttcaccgagggcggcatcaacgacctcgccaagctgcccatggagcagatcgacgccg 411
             | ||||  |||||||||||||| || ||||||||| ||||||||||| ||||||| ||||
Sbjct: 51149 tgttcatggagggcggcatcaaggagctcgccaagatgcccatggaggagatcgaggccg 51090

                     
Query: 412   acaagctc 419
             ||||||||
Sbjct: 51089 acaagctc 51082

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>ref|NM_193986.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1275

 Score =  165 bits (83), Expect = 1e-37
 Identities = 162/188 (86%), Gaps = 4/188 (2%)
 Strand = Plus / Plus

                                                                       
Query: 232 cggagcggctggagccgcgggtggagcagcgggagggcggctactgggtgctcaaggaga 291
           |||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 801 cggagcggctggagccacgggtggagcagcgggagggccgatactgggtgctcaaggaga 860

                                                                       
Query: 292 agtaccgcaccagcctgaacccgcaggagaaggtgaagctgggcaaggagcccatggcgc 351
           ||||||   |  | ||||||||    |||||||||||||| || |||||||||||| |  
Sbjct: 861 agtaccaggctgggctgaaccc----gagaaggtgaagctcgggaaggagcccatgtcat 916

                                                                       
Query: 352 tcttcaccgagggcggcatcaacgacctcgccaagctgcccatggagcagatcgacgccg 411
           | ||||  |||||||||||||| || ||||||||| ||||||||||| ||||||| ||||
Sbjct: 917 tgttcatggagggcggcatcaaggagctcgccaagatgcccatggaggagatcgaggccg 976

                   
Query: 412 acaagctc 419
           ||||||||
Sbjct: 977 acaagctc 984

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>gb|AY109418.1| Zea mays CL2386_1 mRNA sequence
          Length = 1856

 Score =  155 bits (78), Expect = 1e-34
 Identities = 132/150 (88%)
 Strand = Plus / Plus

                                                                       
Query: 274 actgggtgctcaaggagaagtaccgcaccagcctgaacccgcaggagaaggtgaagctgg 333
           ||||||| |||||||||||||||||  |  | ||||||||||||||||||||||||||||
Sbjct: 48  actgggtcctcaaggagaagtaccgggcggggctgaacccgcaggagaaggtgaagctgg 107

                                                                       
Query: 334 gcaaggagcccatggcgctcttcaccgagggcggcatcaacgacctcgccaagctgccca 393
             ||||||||||||||||| ||||  |||||||||||| | ||||| |||| | | ||||
Sbjct: 108 agaaggagcccatggcgctgttcatggagggcggcatccaggacctggccagggtcccca 167

                                         
Query: 394 tggagcagatcgacgccgacaagctcacca 423
           |||||||||||||||||| |||||||||||
Sbjct: 168 tggagcagatcgacgccgccaagctcacca 197

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>gb|AC091248.6| Mus musculus Strain C57BL6/J chromosome 1 BAC, RP23-93D12, complete
             sequence
          Length = 220602

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 78    gcctccctgcagagcttcctcc 99
             ||||||||||||||||||||||
Sbjct: 95919 gcctccctgcagagcttcctcc 95898

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>ref|XM_464420.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 636

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 113 cgcggcgacgtcgtcgtcccg 133
           |||||||||||||||||||||
Sbjct: 319 cgcggcgacgtcgtcgtcccg 339

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>gb|AC110534.11| Mus musculus chromosome 17, clone RP23-174D11, complete sequence
          Length = 174600

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 72    tcctcggcctccctgcagagc 92
             |||||||||||||||||||||
Sbjct: 95057 tcctcggcctccctgcagagc 95037

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>gb|CP000317.1| Polaromonas sp. JS666 plasmid 1, complete sequence
          Length = 360405

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 399    cagatcgacgccgacaagctc 419
              |||||||||||||||||||||
Sbjct: 123307 cagatcgacgccgacaagctc 123327

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>dbj|AK037865.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
           enriched library, clone:A130057C17
           product:unclassifiable, full insert sequence
          Length = 3099

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 72  tcctcggcctccctgcagagc 92
           |||||||||||||||||||||
Sbjct: 793 tcctcggcctccctgcagagc 813

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>dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0453H10
          Length = 133464

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 113   cgcggcgacgtcgtcgtcccg 133
             |||||||||||||||||||||
Sbjct: 39889 cgcggcgacgtcgtcgtcccg 39869

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>emb|AJ322963.1|HSA322963 Homo sapiens genomic sequence surrounding NotI site, clone NR1-MB2C
          Length = 668

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 139 ggcccagccgcgcccgccccg 159
           |||||||||||||||||||||
Sbjct: 27  ggcccagccgcgcccgccccg 47

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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 301     ccagcctgaacccgcaggaga 321
               |||||||||||||||||||||
Sbjct: 1478407 ccagcctgaacccgcaggaga 1478387

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>dbj|AK063218.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-E02, full
           insert sequence
          Length = 636

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 113 cgcggcgacgtcgtcgtcccg 133
           |||||||||||||||||||||
Sbjct: 319 cgcggcgacgtcgtcgtcccg 339

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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 317     ggagaaggtgaagctgggcaaggag 341
               ||||||||||||||||| |||||||
Sbjct: 4443714 ggagaaggtgaagctggacaaggag 4443690

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>gb|AC145207.2| Homo sapiens chromosome 17, clone RP11-498C9, complete sequence
          Length = 182848

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 139    ggcccagccgcgcccgccccg 159
              |||||||||||||||||||||
Sbjct: 153804 ggcccagccgcgcccgccccg 153784

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>ref|NM_197747.1| Oryza sativa (japonica cultivar-group) putative monosaccharide
            transporter (OSJNBa0042H09.10), mRNA
          Length = 1557

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 384  aagctgcccatggagcagat 403
            ||||||||||||||||||||
Sbjct: 1444 aagctgcccatggagcagat 1463

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>gb|AF528822.1| Aspergillus parasiticus oleate delta-12 desaturase-like (odeA) gene,
            complete sequence
          Length = 3211

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 286  aggagaagtaccgcaccagc 305
            ||||||||||||||||||||
Sbjct: 1468 aggagaagtaccgcaccagc 1449

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>ref|XM_417548.1| PREDICTED: Gallus gallus similar to MEGF6 (LOC419385), mRNA
          Length = 5739

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 222  gccgtcccgtcggagcggct 241
            ||||||||||||||||||||
Sbjct: 1087 gccgtcccgtcggagcggct 1068

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>gb|AC166557.2| Spironucleus vortens clone JGIBAWF-5F7, complete sequence
          Length = 40441

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   gagccgcgggtggagcagcg 262
             ||||||||||||||||||||
Sbjct: 31301 gagccgcgggtggagcagcg 31320

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>ref|XM_846110.1| PREDICTED: Canis familiaris similar to Golgi autoantigen, golgin
            subfamily A member 4 (Trans-Golgi p230) (256 kDa golgin)
            (Golgin-245) (72.1 protein) (LOC477020), mRNA
          Length = 4559

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 314  gcaggagaaggtgaagctgggcaaggag 341
            ||||||||||  ||||||||||||||||
Sbjct: 3582 gcaggagaagcagaagctgggcaaggag 3609

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>gb|AF496056.1| Lactobacillus delbrueckii subsp. lactis abc transporter ATP-binding
           protein gene, partial cds
          Length = 710

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 314 gcaggagaaggtgaagctgg 333
           ||||||||||||||||||||
Sbjct: 110 gcaggagaaggtgaagctgg 129

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>emb|AL691458.7| Human DNA sequence from clone RP11-13F15 on chromosome 10, complete
             sequence
          Length = 69133

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   ggcggctactgggtgctcaa 286
             ||||||||||||||||||||
Sbjct: 21372 ggcggctactgggtgctcaa 21353

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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    cggcccacgcggcgacgtcg 125
              ||||||||||||||||||||
Sbjct: 996713 cggcccacgcggcgacgtcg 996694

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>gb|AC079874.21| Oryza sativa chromosome 10 BAC OSJNBa0042H09 genomic sequence,
            complete sequence
          Length = 144191

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 384  aagctgcccatggagcagat 403
            ||||||||||||||||||||
Sbjct: 2186 aagctgcccatggagcagat 2167

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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 141    cccagccgcgcccgccccgt 160
              ||||||||||||||||||||
Sbjct: 203309 cccagccgcgcccgccccgt 203290

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>ref|XM_686059.1| PREDICTED: Danio rerio similar to kalirin, RhoGEF kinase (LOC562685),
            mRNA
          Length = 5187

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 313  cgcaggagaaggtgaagctg 332
            ||||||||||||||||||||
Sbjct: 3641 cgcaggagaaggtgaagctg 3660

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>gb|AC079890.13| Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete
             sequence
          Length = 132927

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 384   aagctgcccatggagcagat 403
             ||||||||||||||||||||
Sbjct: 39775 aagctgcccatggagcagat 39794

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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 348     gcgctcttcaccgagggcgg 367
               ||||||||||||||||||||
Sbjct: 3124080 gcgctcttcaccgagggcgg 3124061

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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 106     cggcccacgcggcgacgtcg 125
               ||||||||||||||||||||
Sbjct: 1486502 cggcccacgcggcgacgtcg 1486521

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 384      aagctgcccatggagcagat 403
                ||||||||||||||||||||
Sbjct: 21607871 aagctgcccatggagcagat 21607890

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>emb|BX119909.5| Zebrafish DNA sequence from clone CH211-223I3 in linkage group 6,
             complete sequence
          Length = 221755

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 313   cgcaggagaaggtgaagctg 332
             ||||||||||||||||||||
Sbjct: 89699 cgcaggagaaggtgaagctg 89680

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>dbj|AK068343.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013148F21, full
            insert sequence
          Length = 1927

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 384  aagctgcccatggagcagat 403
            ||||||||||||||||||||
Sbjct: 1618 aagctgcccatggagcagat 1637

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 384      aagctgcccatggagcagat 403
                ||||||||||||||||||||
Sbjct: 21619534 aagctgcccatggagcagat 21619553

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>dbj|AP006135.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT30O01, TM0233,
             complete sequence
          Length = 126062

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    ctccctgcagagcttcctcc 99
             ||||||||||||||||||||
Sbjct: 48508 ctccctgcagagcttcctcc 48527

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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 403    tcgacgccgacaagctcacc 422
              ||||||||||||||||||||
Sbjct: 241546 tcgacgccgacaagctcacc 241565


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,593,748
Number of Sequences: 3902068
Number of extensions: 2593748
Number of successful extensions: 60526
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59788
Number of HSP's gapped (non-prelim): 723
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result