ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet40h05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_195461.1| Oryza sativa (japonica cultivar-group) putative... 168 9e-39
2gb|AC092387.6| Oryza sativa (japonica cultivar-group) chromosome... 168 9e-39
3gb|AC099325.4| Oryza sativa chromosome 10 BAC OSJNBb0048O22 geno... 168 9e-39
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 168 9e-39
5dbj|AK060177.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 9e-39
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 168 9e-39
7ref|XM_468094.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
8ref|XM_518173.1| PREDICTED: Pan troglodytes similar to hypotheti... 42 1.4
9ref|NM_031140.1| Rattus norvegicus vimentin (Vim), mRNA 42 1.4
10ref|XM_475062.1| Oryza sativa (japonica cultivar-group), predic... 42 1.4
11ref|NM_011701.3| Mus musculus vimentin (Vim), mRNA 42 1.4
12gb|BC061847.1| Rattus norvegicus vimentin, mRNA (cDNA clone MGC:... 42 1.4
13gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 42 1.4
14emb|Z22526.1|MMVMTINA M.musculus vimentin 42 1.4
15emb|X51438.1|MMVIM Mouse mRNA for vimentin 42 1.4
16emb|X62952.1|RNVIM R.norvegicus mRNA for vimentin 42 1.4
17emb|X56397.1|MMVMTM Mouse mRNA for vimentin 42 1.4
18emb|AL731614.4|OSJN00260 Oryza sativa genomic DNA, chromosome 4,... 42 1.4
19gb|AC131025.1| Homo sapiens chromosome 5 clone RP11-394O4, compl... 42 1.4
20emb|CR622771.1| full-length cDNA clone CS0DJ006YH04 of T cells (... 42 1.4
21gb|AE012246.1| Xanthomonas campestris pv. campestris str. ATCC 3... 42 1.4
22dbj|AK131618.1| Mus musculus adult male lung cDNA, RIKEN full-le... 42 1.4
23dbj|AK133726.1| Mus musculus 6 days neonate head cDNA, RIKEN ful... 42 1.4
24dbj|AK153019.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 42 1.4
25dbj|AK151196.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 42 1.4
26gb|AC012613.7| Homo sapiens chromosome 5 clone CTB-162I23, compl... 42 1.4
27dbj|AK159539.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 42 1.4
28dbj|AK170429.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 42 1.4
29dbj|AK169181.1| Mus musculus 17 days embryo heart cDNA, RIKEN fu... 42 1.4
30gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 42 1.4
31dbj|AK076001.1| Mus musculus 10 days embryo whole body cDNA, RIK... 42 1.4
32dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
33dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
34dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
35dbj|AK217953.1| Mus musculus cDNA, clone:Y2G0143I16, strand:plus... 42 1.4
36dbj|AK209386.1| Mus musculus cDNA, clone:Y2G0114P06, strand:plus... 42 1.4
37dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
38emb|AL772303.11| Mouse DNA sequence from clone RP23-185P20 on ch... 42 1.4
39dbj|AK105679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
40dbj|AK103271.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
41gb|BC089335.1| Mus musculus vimentin, mRNA (cDNA clone MGC:10209... 42 1.4
42gb|AC171200.1| Mus musculus BAC clone RP24-423F5 from chromosome... 42 1.4
43gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
44gb|M26251.1|MUSVIMTIN Mouse mRNA encoding vimentin, complete cds 42 1.4
45gb|M24849.1|MUSVIM01 Mouse vimentin mRNA, complete cds 42 1.4
46dbj|D50805.1|MUSVI Mouse Vim gene for vimentin, promoter region ... 42 1.4
47gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 5.5
48gb|AY118081.2| Streptomyces sp. KCTC 0041BP dihydrochalcomyin bi... 40 5.5
49gb|AY509120.1| Streptomyces bikiniensis strain NRRL 2737 chalcom... 40 5.5
50ref|XM_475407.1| Oryza sativa (japonica cultivar-group), predic... 40 5.5
51ref|XM_470204.1| Oryza sativa (japonica cultivar-group), predic... 40 5.5
52gb|AC145366.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
53gb|AC137745.4| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
54ref|XM_422813.1| PREDICTED: Gallus gallus similar to Hypothetica... 40 5.5
55ref|XM_581603.2| PREDICTED: Bos taurus similar to cysteine-rich ... 40 5.5
56gb|AC112159.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
57gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 5.5
58gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
59gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.5
60gb|AY278362.2| Oryza sativa (japonica cultivar-group) cytosolic ... 40 5.5
61ref|XM_843503.1| PREDICTED: Canis familiaris similar to ciliary ... 40 5.5
62emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.5
63gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 5.5
64gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 5.5
65gb|AF394196.1|AF394196 Simian adenovirus 25, complete genome 40 5.5
66gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 5.5
67gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 5.5
68gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 5.5
69dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
70dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
71dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
72dbj|AB193739.1| Auxis rochei genes for 18S rRNA, ITS1, 5.8S rRNA... 40 5.5
73dbj|AB193737.1| Auxis rochei genes for 18S rRNA, ITS1, 5.8S rRNA... 40 5.5
74gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.5
75gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
76dbj|AP005565.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
77dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
78dbj|AK071592.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
79dbj|AK064681.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
80gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 5.5
81gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.5
82gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete... 40 5.5
83gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5 
>ref|NM_195461.1| Oryza sativa (japonica cultivar-group) putative proline-rich
           protein (OSJNBb0048O22.1), mRNA
          Length = 831

 Score =  168 bits (85), Expect = 9e-39
 Identities = 127/141 (90%)
 Strand = Plus / Plus

                                                                       
Query: 259 ttcccgccgattcctctcgtgccggagccaccgaacatcgggggcgtgcccatcccgccg 318
           ||||||||| | ||||||||||||||||| ||||||||||| |||||||| || ||||||
Sbjct: 508 ttcccgccgctccctctcgtgccggagccgccgaacatcggcggcgtgccaattccgccg 567

                                                                       
Query: 319 aacccgatcacgccggcgccgccgtcgctcgtcccgccgttgttccccgccccgtctccg 378
           || || |||||||||||||||||||| |||||||||||| |||||||| |||| ||||| 
Sbjct: 568 aatccaatcacgccggcgccgccgtctctcgtcccgccggtgttccccaccccatctcca 627

                                
Query: 379 ccatccatcctgccgccgctc 399
           ||||| |||||||||||||||
Sbjct: 628 ccatcaatcctgccgccgctc 648
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>gb|AC092387.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJ1004_F02
            map C8, complete sequence
          Length = 116304

 Score =  168 bits (85), Expect = 9e-39
 Identities = 127/141 (90%)
 Strand = Plus / Minus

                                                                        
Query: 259  ttcccgccgattcctctcgtgccggagccaccgaacatcgggggcgtgcccatcccgccg 318
            ||||||||| | ||||||||||||||||| ||||||||||| |||||||| || ||||||
Sbjct: 8396 ttcccgccgctccctctcgtgccggagccgccgaacatcggcggcgtgccaattccgccg 8337

                                                                        
Query: 319  aacccgatcacgccggcgccgccgtcgctcgtcccgccgttgttccccgccccgtctccg 378
            || || |||||||||||||||||||| |||||||||||| |||||||| |||| ||||| 
Sbjct: 8336 aatccaatcacgccggcgccgccgtctctcgtcccgccggtgttccccaccccatctcca 8277

                                 
Query: 379  ccatccatcctgccgccgctc 399
            ||||| |||||||||||||||
Sbjct: 8276 ccatcaatcctgccgccgctc 8256
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>gb|AC099325.4| Oryza sativa chromosome 10 BAC OSJNBb0048O22 genomic sequence, complete
             sequence
          Length = 134825

 Score =  168 bits (85), Expect = 9e-39
 Identities = 127/141 (90%)
 Strand = Plus / Plus

                                                                         
Query: 259   ttcccgccgattcctctcgtgccggagccaccgaacatcgggggcgtgcccatcccgccg 318
             ||||||||| | ||||||||||||||||| ||||||||||| |||||||| || ||||||
Sbjct: 15020 ttcccgccgctccctctcgtgccggagccgccgaacatcggcggcgtgccaattccgccg 15079

                                                                         
Query: 319   aacccgatcacgccggcgccgccgtcgctcgtcccgccgttgttccccgccccgtctccg 378
             || || |||||||||||||||||||| |||||||||||| |||||||| |||| ||||| 
Sbjct: 15080 aatccaatcacgccggcgccgccgtctctcgtcccgccggtgttccccaccccatctcca 15139

                                  
Query: 379   ccatccatcctgccgccgctc 399
             ||||| |||||||||||||||
Sbjct: 15140 ccatcaatcctgccgccgctc 15160
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score =  168 bits (85), Expect = 9e-39
 Identities = 127/141 (90%)
 Strand = Plus / Minus

                                                                           
Query: 259     ttcccgccgattcctctcgtgccggagccaccgaacatcgggggcgtgcccatcccgccg 318
               ||||||||| | ||||||||||||||||| ||||||||||| |||||||| || ||||||
Sbjct: 7151788 ttcccgccgctccctctcgtgccggagccgccgaacatcggcggcgtgccaattccgccg 7151729

                                                                           
Query: 319     aacccgatcacgccggcgccgccgtcgctcgtcccgccgttgttccccgccccgtctccg 378
               || || |||||||||||||||||||| |||||||||||| |||||||| |||| ||||| 
Sbjct: 7151728 aatccaatcacgccggcgccgccgtctctcgtcccgccggtgttccccaccccatctcca 7151669

                                    
Query: 379     ccatccatcctgccgccgctc 399
               ||||| |||||||||||||||
Sbjct: 7151668 ccatcaatcctgccgccgctc 7151648
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>dbj|AK060177.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-312-A05, full
           insert sequence
          Length = 1030

 Score =  168 bits (85), Expect = 9e-39
 Identities = 127/141 (90%)
 Strand = Plus / Plus

                                                                       
Query: 259 ttcccgccgattcctctcgtgccggagccaccgaacatcgggggcgtgcccatcccgccg 318
           ||||||||| | ||||||||||||||||| ||||||||||| |||||||| || ||||||
Sbjct: 535 ttcccgccgctccctctcgtgccggagccgccgaacatcggcggcgtgccaattccgccg 594

                                                                       
Query: 319 aacccgatcacgccggcgccgccgtcgctcgtcccgccgttgttccccgccccgtctccg 378
           || || |||||||||||||||||||| |||||||||||| |||||||| |||| ||||| 
Sbjct: 595 aatccaatcacgccggcgccgccgtctctcgtcccgccggtgttccccaccccatctcca 654

                                
Query: 379 ccatccatcctgccgccgctc 399
           ||||| |||||||||||||||
Sbjct: 655 ccatcaatcctgccgccgctc 675
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  168 bits (85), Expect = 9e-39
 Identities = 127/141 (90%)
 Strand = Plus / Minus

                                                                           
Query: 259     ttcccgccgattcctctcgtgccggagccaccgaacatcgggggcgtgcccatcccgccg 318
               ||||||||| | ||||||||||||||||| ||||||||||| |||||||| || ||||||
Sbjct: 7155074 ttcccgccgctccctctcgtgccggagccgccgaacatcggcggcgtgccaattccgccg 7155015

                                                                           
Query: 319     aacccgatcacgccggcgccgccgtcgctcgtcccgccgttgttccccgccccgtctccg 378
               || || |||||||||||||||||||| |||||||||||| |||||||| |||| ||||| 
Sbjct: 7155014 aatccaatcacgccggcgccgccgtctctcgtcccgccggtgttccccaccccatctcca 7154955

                                    
Query: 379     ccatccatcctgccgccgctc 399
               ||||| |||||||||||||||
Sbjct: 7154954 ccatcaatcctgccgccgctc 7154934
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>ref|XM_468094.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 381

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 331 ccggcgccgccgtcgctcgtc 351
           |||||||||||||||||||||
Sbjct: 231 ccggcgccgccgtcgctcgtc 251
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>ref|XM_518173.1| PREDICTED: Pan troglodytes similar to hypothetical protein MGC3265
           (LOC462355), mRNA
          Length = 386

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 103 ctcgccgcccgccatggcccg 123
           |||||||||||||||||||||
Sbjct: 32  ctcgccgcccgccatggcccg 52
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>ref|NM_031140.1| Rattus norvegicus vimentin (Vim), mRNA
          Length = 1796

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 gtgccggagccaccgaacatc 297
           |||||||||||||||||||||
Sbjct: 139 gtgccggagccaccgaacatc 119
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>ref|XM_475062.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2811

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 364 cccgccccgtctccgccatcc 384
           |||||||||||||||||||||
Sbjct: 221 cccgccccgtctccgccatcc 241
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>ref|NM_011701.3| Mus musculus vimentin (Vim), mRNA
          Length = 2174

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 gtgccggagccaccgaacatc 297
           |||||||||||||||||||||
Sbjct: 539 gtgccggagccaccgaacatc 519
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>gb|BC061847.1| Rattus norvegicus vimentin, mRNA (cDNA clone MGC:72372
           IMAGE:5621065), complete cds
          Length = 1890

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 gtgccggagccaccgaacatc 297
           |||||||||||||||||||||
Sbjct: 179 gtgccggagccaccgaacatc 159
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 60      cctgctcctgctactggtggccttc 84
               |||||||||||| ||||||||||||
Sbjct: 3653037 cctgctcctgctgctggtggccttc 3653061
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>emb|Z22526.1|MMVMTINA M.musculus vimentin
          Length = 3397

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 277  gtgccggagccaccgaacatc 297
            |||||||||||||||||||||
Sbjct: 3396 gtgccggagccaccgaacatc 3376
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>emb|X51438.1|MMVIM Mouse mRNA for vimentin
          Length = 1800

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 gtgccggagccaccgaacatc 297
           |||||||||||||||||||||
Sbjct: 149 gtgccggagccaccgaacatc 129
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>emb|X62952.1|RNVIM R.norvegicus mRNA for vimentin
          Length = 1796

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 gtgccggagccaccgaacatc 297
           |||||||||||||||||||||
Sbjct: 139 gtgccggagccaccgaacatc 119
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>emb|X56397.1|MMVMTM Mouse mRNA for vimentin
          Length = 1748

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 gtgccggagccaccgaacatc 297
           |||||||||||||||||||||
Sbjct: 143 gtgccggagccaccgaacatc 123
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>emb|AL731614.4|OSJN00260 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079F16,
             complete sequence
          Length = 157801

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 99    ccacctcgccgcccgccatgg 119
             |||||||||||||||||||||
Sbjct: 90253 ccacctcgccgcccgccatgg 90273
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>gb|AC131025.1| Homo sapiens chromosome 5 clone RP11-394O4, complete sequence
          Length = 179633

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 103    ctcgccgcccgccatggcccg 123
              |||||||||||||||||||||
Sbjct: 104046 ctcgccgcccgccatggcccg 104026
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>emb|CR622771.1| full-length cDNA clone CS0DJ006YH04 of T cells (Jurkat cell line)
           Cot 10-normalized of Homo sapiens (human)
          Length = 2489

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 103 ctcgccgcccgccatggcccg 123
           |||||||||||||||||||||
Sbjct: 23  ctcgccgcccgccatggcccg 43
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>gb|AE012246.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 154
            of 460 of the complete genome
          Length = 11666

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 51   cggctcgcgcctgctcctgct 71
            |||||||||||||||||||||
Sbjct: 7901 cggctcgcgcctgctcctgct 7881
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>dbj|AK131618.1| Mus musculus adult male lung cDNA, RIKEN full-length enriched
           library, clone:1200014D23 product:vimentin, full insert
           sequence
          Length = 1834

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 gtgccggagccaccgaacatc 297
           |||||||||||||||||||||
Sbjct: 182 gtgccggagccaccgaacatc 162
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>dbj|AK133726.1| Mus musculus 6 days neonate head cDNA, RIKEN full-length enriched
           library, clone:5430439O09 product:vimentin, full insert
           sequence
          Length = 1835

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 gtgccggagccaccgaacatc 297
           |||||||||||||||||||||
Sbjct: 181 gtgccggagccaccgaacatc 161
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>dbj|AK153019.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830119C09 product:vimentin,
           full insert sequence
          Length = 1837

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 gtgccggagccaccgaacatc 297
           |||||||||||||||||||||
Sbjct: 183 gtgccggagccaccgaacatc 163
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>dbj|AK151196.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830026K23 product:vimentin,
           full insert sequence
          Length = 1835

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 gtgccggagccaccgaacatc 297
           |||||||||||||||||||||
Sbjct: 183 gtgccggagccaccgaacatc 163
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>gb|AC012613.7| Homo sapiens chromosome 5 clone CTB-162I23, complete sequence
          Length = 164550

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 103  ctcgccgcccgccatggcccg 123
            |||||||||||||||||||||
Sbjct: 7087 ctcgccgcccgccatggcccg 7067
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>dbj|AK159539.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
           library, clone:I420023H06 product:vimentin, full insert
           sequence
          Length = 1827

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 gtgccggagccaccgaacatc 297
           |||||||||||||||||||||
Sbjct: 181 gtgccggagccaccgaacatc 161
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>dbj|AK170429.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630103E23
           product:vimentin, full insert sequence
          Length = 1827

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 gtgccggagccaccgaacatc 297
           |||||||||||||||||||||
Sbjct: 181 gtgccggagccaccgaacatc 161
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>dbj|AK169181.1| Mus musculus 17 days embryo heart cDNA, RIKEN full-length enriched
           library, clone:I920087O13 product:vimentin, full insert
           sequence
          Length = 1828

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 gtgccggagccaccgaacatc 297
           |||||||||||||||||||||
Sbjct: 182 gtgccggagccaccgaacatc 162
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 51      cggctcgcgcctgctcctgct 71
               |||||||||||||||||||||
Sbjct: 3338055 cggctcgcgcctgctcctgct 3338075
to top
>dbj|AK076001.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2610021E04 product:vimentin,
           full insert sequence
          Length = 1832

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 gtgccggagccaccgaacatc 297
           |||||||||||||||||||||
Sbjct: 182 gtgccggagccaccgaacatc 162
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 99       ccacctcgccgcccgccatgg 119
                |||||||||||||||||||||
Sbjct: 11921658 ccacctcgccgcccgccatgg 11921678
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 364    cccgccccgtctccgccatcc 384
              |||||||||||||||||||||
Sbjct: 187989 cccgccccgtctccgccatcc 188009



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 165      ccccggcggcgcggccacgg 184
                ||||||||||||||||||||
Sbjct: 22849045 ccccggcggcgcggccacgg 22849026
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 331      ccggcgccgccgtcgctcgtc 351
                |||||||||||||||||||||
Sbjct: 33016088 ccggcgccgccgtcgctcgtc 33016108
to top
>dbj|AK217953.1| Mus musculus cDNA, clone:Y2G0143I16, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000028062, based on BLAT search
          Length = 418

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 gtgccggagccaccgaacatc 297
           |||||||||||||||||||||
Sbjct: 26  gtgccggagccaccgaacatc 6
to top
>dbj|AK209386.1| Mus musculus cDNA, clone:Y2G0114P06, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000028062, based on BLAT search
          Length = 414

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 gtgccggagccaccgaacatc 297
           |||||||||||||||||||||
Sbjct: 26  gtgccggagccaccgaacatc 6
to top
>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1293_A01
          Length = 139121

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 331   ccggcgccgccgtcgctcgtc 351
             |||||||||||||||||||||
Sbjct: 62028 ccggcgccgccgtcgctcgtc 62048
to top
>emb|AL772303.11| Mouse DNA sequence from clone RP23-185P20 on chromosome 2, complete
             sequence
          Length = 202001

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 277   gtgccggagccaccgaacatc 297
             |||||||||||||||||||||
Sbjct: 47694 gtgccggagccaccgaacatc 47674
to top
>dbj|AK105679.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-B03, full
           insert sequence
          Length = 3336

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 364 cccgccccgtctccgccatcc 384
           |||||||||||||||||||||
Sbjct: 334 cccgccccgtctccgccatcc 354
to top
>dbj|AK103271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124H21, full
           insert sequence
          Length = 3259

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 364 cccgccccgtctccgccatcc 384
           |||||||||||||||||||||
Sbjct: 274 cccgccccgtctccgccatcc 294
to top
>gb|BC089335.1| Mus musculus vimentin, mRNA (cDNA clone MGC:102095 IMAGE:6415629),
           complete cds
          Length = 1888

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 gtgccggagccaccgaacatc 297
           |||||||||||||||||||||
Sbjct: 176 gtgccggagccaccgaacatc 156
to top
>gb|AC171200.1| Mus musculus BAC clone RP24-423F5 from chromosome 13, complete sequence
          Length = 170621

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 73     ctggtggccttctctttgttc 93
              |||||||||||||||||||||
Sbjct: 131538 ctggtggccttctctttgttc 131518
to top
>gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668H12,
             complete sequence
          Length = 160603

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 364   cccgccccgtctccgccatcc 384
             |||||||||||||||||||||
Sbjct: 70173 cccgccccgtctccgccatcc 70193
to top
>gb|M26251.1|MUSVIMTIN Mouse mRNA encoding vimentin, complete cds
          Length = 2174

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 gtgccggagccaccgaacatc 297
           |||||||||||||||||||||
Sbjct: 539 gtgccggagccaccgaacatc 519
to top
>gb|M24849.1|MUSVIM01 Mouse vimentin mRNA, complete cds
          Length = 1443

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 gtgccggagccaccgaacatc 297
           |||||||||||||||||||||
Sbjct: 97  gtgccggagccaccgaacatc 77
to top
>dbj|D50805.1|MUSVI Mouse Vim gene for vimentin, promoter region and partial cds
          Length = 3677

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 277  gtgccggagccaccgaacatc 297
            |||||||||||||||||||||
Sbjct: 3391 gtgccggagccaccgaacatc 3371
to top
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 315     gccgaacccgatcacgccgg 334
               ||||||||||||||||||||
Sbjct: 3522773 gccgaacccgatcacgccgg 3522792
to top
>gb|AY118081.2| Streptomyces sp. KCTC 0041BP dihydrochalcomyin biosynthesis gene
             cluster, complete sequence
          Length = 75439

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 92    tccacggccacctcgccgcccgcc 115
             |||||||||| |||||||||||||
Sbjct: 42705 tccacggccatctcgccgcccgcc 42728
to top
>gb|AY509120.1| Streptomyces bikiniensis strain NRRL 2737 chalcomycin biosynthetic gene
             cluster, partial sequence
          Length = 85915

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 92    tccacggccacctcgccgcccgcc 115
             |||||| |||||||||||||||||
Sbjct: 38524 tccacgaccacctcgccgcccgcc 38547
to top
>ref|XM_475407.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1083

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 165 ccccggcggcgcggccacgg 184
           ||||||||||||||||||||
Sbjct: 222 ccccggcggcgcggccacgg 241
to top
>ref|XM_470204.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1254

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 330 gccggcgccgccgtcgctcg 349
           ||||||||||||||||||||
Sbjct: 219 gccggcgccgccgtcgctcg 238
to top
>gb|AC145366.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0014O08 map near S2137, complete sequence
          Length = 134033

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    tccacggccacctcgccgcc 111
             ||||||||||||||||||||
Sbjct: 94731 tccacggccacctcgccgcc 94712
to top
>gb|AC137745.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBb0041J18, complete sequence
          Length = 129523

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 159  cgtcggccccggcggcgcgg 178
            ||||||||||||||||||||
Sbjct: 2355 cgtcggccccggcggcgcgg 2374
to top
>ref|XM_422813.1| PREDICTED: Gallus gallus similar to Hypothetical protein MGC76205
           (LOC425009), mRNA
          Length = 3043

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 301 ggcgtgcccatcccgccgaacccg 324
           ||||||||||||||||| ||||||
Sbjct: 553 ggcgtgcccatcccgcccaacccg 576
to top
>ref|XM_581603.2| PREDICTED: Bos taurus similar to cysteine-rich secretory protein
           LCCL domain containing 2 (LOC505329), mRNA
          Length = 4591

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 194 cctcaggcgcccaggccgcc 213
           ||||||||||||||||||||
Sbjct: 727 cctcaggcgcccaggccgcc 746
to top
>gb|AC112159.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1058_C01,
             complete sequence
          Length = 114236

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   ccccggcggcgcggccacgg 184
             ||||||||||||||||||||
Sbjct: 47749 ccccggcggcgcggccacgg 47730
to top
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 322     ccgatcacgccggcgccgcc 341
               ||||||||||||||||||||
Sbjct: 3010874 ccgatcacgccggcgccgcc 3010855
to top
>gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057E15,
              complete sequence
          Length = 149035

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 159    cgtcggccccggcggcgcgg 178
              ||||||||||||||||||||
Sbjct: 115185 cgtcggccccggcggcgcgg 115204
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 330     gccggcgccgccgtcgctcg 349
               ||||||||||||||||||||
Sbjct: 2492138 gccggcgccgccgtcgctcg 2492157
to top
>gb|AY278362.2| Oryza sativa (japonica cultivar-group) cytosolic 6-phosphogluconate
           dehydrogenase (6PGDH2) mRNA, complete cds
          Length = 1480

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 cgtcggccccggcggcgcgg 178
           ||||||||||||||||||||
Sbjct: 491 cgtcggccccggcggcgcgg 510
to top
>ref|XM_843503.1| PREDICTED: Canis familiaris similar to ciliary rootlet coiled-coil,
            rootletin (LOC606998), mRNA
          Length = 2394

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 390  gccgccgctcgtcccgcagc 409
            ||||||||||||||||||||
Sbjct: 1867 gccgccgctcgtcccgcagc 1848
to top
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 322     ccgatcacgccggcgccgcc 341
               ||||||||||||||||||||
Sbjct: 1189696 ccgatcacgccggcgccgcc 1189677
to top
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 158     ccgtcggccccggcggcgcg 177
               ||||||||||||||||||||
Sbjct: 4768967 ccgtcggccccggcggcgcg 4768948
to top
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 92      tccacggccacctcgccgcc 111
               ||||||||||||||||||||
Sbjct: 2908283 tccacggccacctcgccgcc 2908302
to top
>gb|AF394196.1|AF394196 Simian adenovirus 25, complete genome
          Length = 36521

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 54    ctcgcgcctgctcctgctactggtggcc 81
             |||||||||||| ||||| |||||||||
Sbjct: 12722 ctcgcgcctgctgctgctgctggtggcc 12749
to top
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 312     cccgccgaacccgatcacgc 331
               ||||||||||||||||||||
Sbjct: 3019940 cccgccgaacccgatcacgc 3019959
to top
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 322     ccgatcacgccggcgccgcc 341
               ||||||||||||||||||||
Sbjct: 1438242 ccgatcacgccggcgccgcc 1438261
to top
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 323     cgatcacgccggcgccgccgtcgc 346
               |||||||||||||| |||||||||
Sbjct: 1939090 cgatcacgccggcgtcgccgtcgc 1939067
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 159      cgtcggccccggcggcgcgg 178
                ||||||||||||||||||||
Sbjct: 16474586 cgtcggccccggcggcgcgg 16474605



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 92      tccacggccacctcgccgcc 111
               ||||||||||||||||||||
Sbjct: 8683565 tccacggccacctcgccgcc 8683546
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 327      cacgccggcgccgccgtcgc 346
                ||||||||||||||||||||
Sbjct: 15940782 cacgccggcgccgccgtcgc 15940801
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 330     gccggcgccgccgtcgctcg 349
               ||||||||||||||||||||
Sbjct: 2492248 gccggcgccgccgtcgctcg 2492267
to top
>dbj|AB193739.1| Auxis rochei genes for 18S rRNA, ITS1, 5.8S rRNA. ITS2, 28S rRNA,
            partial and complete sequence, Atlant 6
          Length = 3045

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 102  cctcgccgcccgccatggcccgaggcacgcgc 133
            ||||||||||| ||  ||||||||||||||||
Sbjct: 1910 cctcgccgccccccccggcccgaggcacgcgc 1941
to top
>dbj|AB193737.1| Auxis rochei genes for 18S rRNA, ITS1, 5.8S rRNA. ITS2, 28S rRNA,
            partial and complete sequence, Atlant 4
          Length = 3045

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 102  cctcgccgcccgccatggcccgaggcacgcgc 133
            ||||||||||| ||  ||||||||||||||||
Sbjct: 1910 cctcgccgccccccccggcccgaggcacgcgc 1941
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 323     cgatcacgccggcgccgccg 342
               ||||||||||||||||||||
Sbjct: 2640556 cgatcacgccggcgccgccg 2640537



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 97      ggccacctcgccgcccgcca 116
               ||||||||||||||||||||
Sbjct: 2291327 ggccacctcgccgcccgcca 2291346
to top
>gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1172F09,
             complete sequence
          Length = 106057

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 330   gccggcgccgccgtcgctcg 349
             ||||||||||||||||||||
Sbjct: 64634 gccggcgccgccgtcgctcg 64653
to top
>dbj|AP005565.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1238_G07
          Length = 78304

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   cacgccggcgccgccgtcgc 346
             ||||||||||||||||||||
Sbjct: 11495 cacgccggcgccgccgtcgc 11514
to top
>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1081_G10
          Length = 107955

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 327    cacgccggcgccgccgtcgc 346
              ||||||||||||||||||||
Sbjct: 103908 cacgccggcgccgccgtcgc 103927
to top
>dbj|AK071592.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104G24, full
           insert sequence
          Length = 1890

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 cgtcggccccggcggcgcgg 178
           ||||||||||||||||||||
Sbjct: 647 cgtcggccccggcggcgcgg 666
to top
>dbj|AK064681.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-A05, full
           insert sequence
          Length = 1385

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 165 ccccggcggcgcggccacgg 184
           ||||||||||||||||||||
Sbjct: 262 ccccggcggcgcggccacgg 281
to top
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 338     cgccgtcgctcgtcccgccgttgt 361
               |||||||||||||| |||||||||
Sbjct: 1615505 cgccgtcgctcgtcacgccgttgt 1615482
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 200     gcgcccaggccgccgtccgg 219
               ||||||||||||||||||||
Sbjct: 4276698 gcgcccaggccgccgtccgg 4276717
to top
>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence
          Length = 412348

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    tcggccccggcggcgcggcc 180
              ||||||||||||||||||||
Sbjct: 224966 tcggccccggcggcgcggcc 224985
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 159      cgtcggccccggcggcgcgg 178
                ||||||||||||||||||||
Sbjct: 16565590 cgtcggccccggcggcgcgg 16565609



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 92      tccacggccacctcgccgcc 111
               ||||||||||||||||||||
Sbjct: 8754328 tccacggccacctcgccgcc 8754309


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,735,005
Number of Sequences: 3902068
Number of extensions: 2735005
Number of successful extensions: 76128
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72672
Number of HSP's gapped (non-prelim): 3456
length of query: 412
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 390
effective length of database: 17,147,199,772
effective search space: 6687407911080
effective search space used: 6687407911080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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