>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 266

 Score = 54.7 bits (130), Expect = 6e-08
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = +3

Query: 117 GKAVKDLPSSALFGEARVTMRKTAAKAKPVSSS 215
           GKAVK+LPSSAL G+ARV MRKTAAKAK VSSS
Sbjct: 15  GKAVKNLPSSALIGDARVNMRKTAAKAKQVSSS 47

>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor|
           (LHCII type I CAB-M9) (LHCP)
          Length = 265

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 27/33 (81%), Positives = 30/33 (90%)
 Frame = +3

Query: 117 GKAVKDLPSSALFGEARVTMRKTAAKAKPVSSS 215
           GKAV ++PSS LFGEARVTMRKTAAKAKP +SS
Sbjct: 15  GKAV-NVPSS-LFGEARVTMRKTAAKAKPAASS 45

>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 265

 Score = 44.3 bits (103), Expect = 9e-05
 Identities = 25/33 (75%), Positives = 30/33 (90%)
 Frame = +3

Query: 117 GKAVKDLPSSALFGEARVTMRKTAAKAKPVSSS 215
           GKAV ++PSS+ FGEARVTMRKTAAKAKP ++S
Sbjct: 15  GKAV-NVPSSS-FGEARVTMRKTAAKAKPAAAS 45

>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 265

 Score = 44.3 bits (103), Expect = 9e-05
 Identities = 21/25 (84%), Positives = 23/25 (92%)
 Frame = +3

Query: 141 SSALFGEARVTMRKTAAKAKPVSSS 215
           SSALFGEAR+TMRKTAAK KP +SS
Sbjct: 21  SSALFGEARITMRKTAAKPKPAASS 45

>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor|
           (LHCII type I CAB-C) (LHCP)
          Length = 267

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 24/34 (70%), Positives = 28/34 (82%), Gaps = 1/34 (2%)
 Frame = +3

Query: 117 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVSSS 215
           GKAVK  PSS+ + G  +VTMRKTA+KAKPVSSS
Sbjct: 15  GKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSS 48

>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor|
           (LHCII type I CAB-16) (LHCP)
          Length = 266

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 23/33 (69%), Positives = 27/33 (81%), Gaps = 1/33 (3%)
 Frame = +3

Query: 117 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVSS 212
           GKAVK  PSS+ + G  +VTMRKTA+KAKPVSS
Sbjct: 14  GKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSS 46

>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor|
           (LHCII type I CAB-3C) (LHCP)
          Length = 267

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 23/33 (69%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
 Frame = +3

Query: 117 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVSS 212
           GKAVK  PSS+ + G  RVTMRKTA KAKP SS
Sbjct: 15  GKAVKLSPSSSEITGNGRVTMRKTATKAKPASS 47

>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor|
           (LHCII type I CAB-E) (LHCP)
          Length = 266

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 23/33 (69%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
 Frame = +3

Query: 117 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVSS 212
           GKAVK  PSS+ + G  +VTMRKTA KAKPVSS
Sbjct: 14  GKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSS 46

>CB2F_LYCES (P14277) Chlorophyll a-b binding protein 3B, chloroplast precursor|
           (LHCII type I CAB-3B) (LHCP) (Fragments)
          Length = 267

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 22/33 (66%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
 Frame = +3

Query: 117 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVSS 212
           GKAVK  PSS+ + G  R+TMRKTAAK KP SS
Sbjct: 15  GKAVKLSPSSSEISGNGRITMRKTAAKPKPASS 47

>CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloroplast precursor|
           (LHCII type I CAB-3A) (LHCP) (Fragments)
          Length = 267

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 21/33 (63%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = +3

Query: 117 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVSS 212
           GK VK  PSS+ + G  R+TMRKTAAK KP SS
Sbjct: 15  GKTVKLAPSSSEITGNGRITMRKTAAKPKPASS 47

>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor|
           (LHCII type I CAB-50) (LHCP)
          Length = 267

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 21/33 (63%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
 Frame = +3

Query: 117 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVSS 212
           GKAVK  PSS+ + G  +VTMRKT  KAKP+SS
Sbjct: 15  GKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSS 47

>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor|
           (LHCII type I CAB-91R) (LHCP)
          Length = 267

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 21/33 (63%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = +3

Query: 117 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVSS 212
           GKAVK  PSS+ + G  + TMRKT  KAKPVSS
Sbjct: 15  GKAVKFSPSSSEITGNGKATMRKTVTKAKPVSS 47

>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor|
           (LHCII type I CAB-40) (LHCP)
          Length = 267

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 22/33 (66%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
 Frame = +3

Query: 117 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVSS 212
           GKAVK  PSS+ + G  +VTMRKTA+KAK VSS
Sbjct: 15  GKAVKLSPSSSEITGNGKVTMRKTASKAKTVSS 47

>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor|
           (LHCII type I CAB-22L) (LHCP)
          Length = 267

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 21/33 (63%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = +3

Query: 117 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVSS 212
           GK VK  PSS+ + G  + TMRKTA KAKPVSS
Sbjct: 15  GKVVKLSPSSSEITGNGKATMRKTATKAKPVSS 47

>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor|
           (LHCII type I CAB-22R) (LHCP)
          Length = 267

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 21/34 (61%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +3

Query: 117 GKAVK-DLPSSALFGEARVTMRKTAAKAKPVSSS 215
           GKAVK    SS + G  +VTMRKT  KAKP SSS
Sbjct: 15  GKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSS 48

>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor|
           (LHCII type I CAB-25) (LHCP)
          Length = 266

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 19/32 (59%), Positives = 21/32 (65%)
 Frame = +3

Query: 117 GKAVKDLPSSALFGEARVTMRKTAAKAKPVSS 212
           GKAV    SS + G  + TMRKT  KAKPVSS
Sbjct: 15  GKAVNVPSSSQITGNGKATMRKTVTKAKPVSS 46

>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 267

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 21/34 (61%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +3

Query: 117 GKAVKDLPS-SALFGEARVTMRKTAAKAKPVSSS 215
           GKAVK  P+ S + GE R+TMRKTA K K V SS
Sbjct: 15  GKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSS 48

>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type I CAB-13) (LHCP)
          Length = 266

 Score = 35.8 bits (81), Expect = 0.031
 Identities = 19/32 (59%), Positives = 21/32 (65%)
 Frame = +3

Query: 117 GKAVKDLPSSALFGEARVTMRKTAAKAKPVSS 212
           GKAV    SS +    +VTMRKT  KAKPVSS
Sbjct: 15  GKAVNVPSSSEITRNGKVTMRKTVTKAKPVSS 46

>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor|
           (LHCII type I CAB-48) (LHCP)
          Length = 264

 Score = 34.7 bits (78), Expect = 0.069
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +3

Query: 150 LFGEARVTMRKTAAKAKPVSS 212
           +FGE R+TMRKTAAK KP  S
Sbjct: 24  VFGEGRITMRKTAAKPKPARS 44

>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCII type I CAB-7) (LHCP)
          Length = 267

 Score = 34.3 bits (77), Expect = 0.091
 Identities = 19/33 (57%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 117 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVSS 212
           G AVK  PSS+ + G  +  MRKT  KAKPVSS
Sbjct: 15  GNAVKLSPSSSEITGNGKAIMRKTVTKAKPVSS 47

>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 261

 Score = 34.3 bits (77), Expect = 0.091
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +3

Query: 141 SSALFGEARVTMRKTAAKAKPVSS 212
           ++ +FGE R+TMRK+AAK KP +S
Sbjct: 18  AAKVFGEGRITMRKSAAKPKPAAS 41

>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 264

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 19/29 (65%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
 Frame = +3

Query: 117 GKAVKDLPSSA-LFGEARVTMRKTAAKAK 200
           GKAVK+L SS+ + G+ARV+MRKTAA  K
Sbjct: 15  GKAVKNLSSSSEVQGDARVSMRKTAATKK 43

>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (CAB-140) (LHCP)
          Length = 267

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 20/34 (58%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 117 GKAVKDLPS-SALFGEARVTMRKTAAKAKPVSSS 215
           GKAVK  P+ S + G  RVTMRKT AK K  S S
Sbjct: 15  GKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGS 48

>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor|
           (Allergen Api g 3)
          Length = 264

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 21/34 (61%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +3

Query: 117 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVSSS 215
           GKAVK  PSS+ LFG  RV+MRKT     PVS S
Sbjct: 15  GKAVKVAPSSSELFGNGRVSMRKTV--KAPVSDS 46

>CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloroplast precursor|
           (LHCII type I CAB-1C) (LHCP) (Fragments)
          Length = 265

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 117 GKAVKDLPS-SALFGEARVTMRKTAAKAKPVSS 212
           G+AVK  PS S + G  R+TMRK  AK+ P SS
Sbjct: 15  GQAVKLSPSASEISGNGRITMRKAVAKSAPSSS 47

>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor|
           (LHCII type I CAB-1B) (LHCP)
          Length = 265

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 117 GKAVKDLPS-SALFGEARVTMRKTAAKAKPVSS 212
           G+AVK  PS S + G  R+TMRK  AK+ P SS
Sbjct: 15  GQAVKLSPSASEISGNGRITMRKAVAKSAPSSS 47

>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast|
           precursor (LHCII type I CAB-165/180)
          Length = 267

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 117 GKAVKDLPS-SALFGEARVTMRKTAAKAKPVSSS 215
           GKAV   P+ S + G  RVTMRKT AK K  S S
Sbjct: 15  GKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGS 48

>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 266

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 117 GKAVKDLP-SSALFGEARVTMRKTAAKAKPVSS 212
           GKAVK  P +S +FG  RVTMRKT     P  S
Sbjct: 15  GKAVKLSPGASEVFGTGRVTMRKTVKPTGPSGS 47

>CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloroplast precursor|
           (LHCII type I CAB-1A) (LHCP) (Fragments)
          Length = 265

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 117 GKAVKDLPS-SALFGEARVTMRKTAAKAKPVSS 212
           G+AVK  PS S   G  R+TMRK  AK+ P SS
Sbjct: 15  GQAVKLSPSASENSGNGRITMRKAVAKSAPSSS 47

>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast|
           precursor (LHCII type I CAB-AB80) (LHCP)
          Length = 269

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = +3

Query: 117 GKAVKDLPSSALFGEARVTMRKTAAKAKPVSS 212
           GK +K  PSS   G AR TMRK+A   K  SS
Sbjct: 18  GKQLKLNPSSQELGAARFTMRKSATTKKVASS 49

>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 256

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 117 GKAVKDLPSSALFGEARVTMRKTAAK 194
           G+A+K  PS+   G  RV+MRKTA K
Sbjct: 15  GQAMKLAPSTPELGVGRVSMRKTAPK 40

>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 262

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 153 FGEARVTMRKTAAKAKPVSS 212
           FGE R+TMRKT  K K  +S
Sbjct: 23  FGEGRITMRKTVGKPKVAAS 42


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.127    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,244,643
Number of Sequences: 219361
Number of extensions: 314471
Number of successful extensions: 977
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 80,573,946
effective HSP length: 47
effective length of database: 70,263,979
effective search space used: 1686335496
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)