ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet40d08 |
|---|---|
| Clone Library Name | barley_pub |
>PORA_HORVU (P13653) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 118 bits (295), Expect = 7e-27 Identities = 64/100 (64%), Positives = 64/100 (64%) Frame = +1 Query: 130 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXX 309 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQ Sbjct: 9 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQVATAPSPVTTSPGSTASSPSG 68 Query: 310 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRD 429 KKTLRQGVVVIT ETGKWHVVMACRD Sbjct: 69 KKTLRQGVVVITGASSGLGLAAAKALAETGKWHVVMACRD 108
>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 117 bits (292), Expect = 2e-26 Identities = 63/100 (63%), Positives = 63/100 (63%) Frame = +1 Query: 130 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXX 309 TLSVPKKGSSMGA AVKDTAAFLGVSSKAKKASLAVRTQ Sbjct: 9 TLSVPKKGSSMGAAAVKDTAAFLGVSSKAKKASLAVRTQVATAPSSVTTSPGSATAKPSG 68 Query: 310 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRD 429 KKTLRQGVVVIT ETGKWHVVMACRD Sbjct: 69 KKTLRQGVVVITGASSGLGLAAAKALAETGKWHVVMACRD 108
>PORA_CUCSA (Q41249) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 52.8 bits (125), Expect = 3e-07 Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 12/111 (10%) Frame = +1 Query: 133 LSVPKKGSSMGAVAVKDTAAFLGVSS----KAKKASLAVRTQ--------XXXXXXXXXX 276 LS+PK+G S +V +KD++ F G+S K++ +S +R + Sbjct: 13 LSIPKEGKS--SVCLKDSSLF-GISFSDHLKSEFSSSTLRCKRELNQQIGAIRAQTTATE 69 Query: 277 XXXXXXXXXXXKKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRD 429 KKTLR+G VVIT ETGKWHV+MACRD Sbjct: 70 SPAVNKATPDGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRD 120
>POR_PEA (Q01289) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 399 Score = 49.3 bits (116), Expect = 4e-06 Identities = 38/112 (33%), Positives = 50/112 (44%), Gaps = 12/112 (10%) Frame = +1 Query: 130 TLSVPKKGSSMGAVAVKDTAAFLGVSS-----KAKKASLAVRTQ-------XXXXXXXXX 273 + S+PK+G +GA ++KD+ F GVSS K S A+R + Sbjct: 12 SFSIPKEGK-IGA-SLKDSTLF-GVSSLSDSLKGDFTSSALRCKELRQKVGAVRAETAAP 68 Query: 274 XXXXXXXXXXXXKKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRD 429 KKTLR+G VVIT E+GKWHV+MACRD Sbjct: 69 ATPAVNKSSSEGKKTLRKGNVVITGASSGLGLATAKALAESGKWHVIMACRD 120
>POR_DAUCA (Q9SDT1) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 48.5 bits (114), Expect = 7e-06 Identities = 21/40 (52%), Positives = 24/40 (60%) Frame = +1 Query: 310 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRD 429 KKTLR+G V+IT ETGKWHV+MACRD Sbjct: 80 KKTLRKGSVIITGASSGLGLATAKALAETGKWHVIMACRD 119
>PORA_ARATH (Q42536) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 405 Score = 48.1 bits (113), Expect = 9e-06 Identities = 21/40 (52%), Positives = 24/40 (60%) Frame = +1 Query: 310 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRD 429 KKTLR+G VV+T ETGKWHV+MACRD Sbjct: 87 KKTLRKGNVVVTGASSGLGLATAKALAETGKWHVIMACRD 126
>PORB_ARATH (P21218) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 401 Score = 45.4 bits (106), Expect = 6e-05 Identities = 20/40 (50%), Positives = 24/40 (60%) Frame = +1 Query: 310 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRD 429 KKTLR+G VV+T ETGKW+V+MACRD Sbjct: 83 KKTLRKGNVVVTGASSGLGLATAKALAETGKWNVIMACRD 122
>PORB_HORVU (Q42850) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 395 Score = 45.4 bits (106), Expect = 6e-05 Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 1/89 (1%) Frame = +1 Query: 166 AVAVKDTAAFLGVSSK-AKKASLAVRTQXXXXXXXXXXXXXXXXXXXXXKKTLRQGVVVI 342 A +K A LG+ +K +S+A+R Q KKT+R G +I Sbjct: 33 ADGLKLDATSLGLRTKRVNTSSVAIRAQAAAVSAPTATPASPAG-----KKTVRTGNAII 87 Query: 343 TXXXXXXXXXXXXXXXETGKWHVVMACRD 429 T E+GKWHV+MACRD Sbjct: 88 TGASSGLGLATAKALAESGKWHVIMACRD 116
>PORC_ARATH (O48741) Protochlorophyllide reductase C, chloroplast precursor (EC| 1.3.1.33) (PCR C) (NADPH-protochlorophyllide oxidoreductase C) (POR C) Length = 401 Score = 42.4 bits (98), Expect = 5e-04 Identities = 18/40 (45%), Positives = 22/40 (55%) Frame = +1 Query: 310 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRD 429 KKT R+G VIT +TGKWHV+MACR+ Sbjct: 84 KKTERKGTAVITGASSGLGLATAKALADTGKWHVIMACRN 123
>POR_AVESA (P15904) Protochlorophyllide reductase (EC 1.3.1.33) (PCR)| (NADPH-protochlorophyllide oxidoreductase) (POR) (Fragment) Length = 313 Score = 39.7 bits (91), Expect = 0.003 Identities = 18/33 (54%), Positives = 18/33 (54%) Frame = +1 Query: 331 VVVITXXXXXXXXXXXXXXXETGKWHVVMACRD 429 VVVIT ETGKWHVVMACRD Sbjct: 1 VVVITGASSGLGLAAAKALAETGKWHVVMACRD 33
>POR_MARPA (O80333) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 458 Score = 38.5 bits (88), Expect = 0.007 Identities = 26/93 (27%), Positives = 36/93 (38%) Frame = +1 Query: 151 GSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXXKKTLRQG 330 G MG VA K A L VS+ A ++++ KKT + Sbjct: 92 GLRMGEVA-KFGGALLSVSTVAAN----LKSKPGVLSVNAVTAPAETMNKPSSKKTATKS 146 Query: 331 VVVITXXXXXXXXXXXXXXXETGKWHVVMACRD 429 +IT +TG+WHV+MACRD Sbjct: 147 TCIITGASSGLGLATAKALADTGEWHVIMACRD 179
>POR_CHLRE (Q39617) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 397 Score = 33.1 bits (74), Expect = 0.29 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = +1 Query: 316 TLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRD 429 T ++ +IT TG+WHVVMACRD Sbjct: 82 TQQKQTAIITGASSGLGLNAAKALAATGEWHVVMACRD 119
>RPOA_ANAMM (Q5PA81) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 366 Score = 32.0 bits (71), Expect = 0.64 Identities = 19/50 (38%), Positives = 26/50 (52%) Frame = -2 Query: 188 AVSFTATAPMLLPFLGTERVEGRSWRAMDDGELGLSLASTALQEFNELEL 39 AVS L F+G+E VEG S + +D E L L++ +ELEL Sbjct: 243 AVSARVLQDQLQSFIGSEEVEGESRKKVDKEEGALPYDHNLLRKVDELEL 292
>ICAM5_MOUSE (Q60625) Intercellular adhesion molecule 5 precursor (ICAM-5)| (Telencephalin) Length = 917 Score = 30.8 bits (68), Expect = 1.4 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -2 Query: 329 PCRSVFLPLGDDAVEPGLVVTGEGAVATCVLTAS 228 P V+L LGD + P + + G+ VAT TAS Sbjct: 258 PEAGVYLSLGDQRLNPNVTLDGDSLVATATATAS 291
>YHIM_ECOLI (P37630) Inner membrane protein yhiM| Length = 364 Score = 30.4 bits (67), Expect = 1.9 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = -2 Query: 296 DAVEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPM 159 D G V+ G G +A CV T + + LL P+NAA S + P+ Sbjct: 117 DEFVAGHVIFGVGMIAACVSTVAASSGHFLLIPKNAAGSKSDGTPV 162
>CASK_CAMDR (P79139) Kappa-casein precursor| Length = 182 Score = 30.0 bits (66), Expect = 2.4 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -2 Query: 290 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 168 VEP ++ T E AV T V+ + + F TP V T+T Sbjct: 140 VEPPVIPTAEPAVNTVVIAEASSEFITTSTPETTTVQITST 180
>ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor (ICAM-5)| (Telencephalin) Length = 924 Score = 28.9 bits (63), Expect = 5.4 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -2 Query: 317 VFLPLGDDAVEPGLVVTGEGAVATCVLTAS 228 V+L LGD + P + + G+ VAT TAS Sbjct: 262 VYLALGDQNLSPDVTLEGDAFVATATATAS 291
>FLR1_YEAST (P38124) Fluconazole resistance protein 1| Length = 548 Score = 28.5 bits (62), Expect = 7.1 Identities = 26/86 (30%), Positives = 39/86 (45%) Frame = -2 Query: 275 VVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPMLLPFLGTERVEGRSWRAMDDG 96 + TG G VA + S L+L +A AP+L P LG V+ ++WR + Sbjct: 212 LATGGGTVADII---SPEMVPLVLGMWSAGA---VAAPVLAPLLGAAMVDAKNWRFIFWL 265 Query: 95 ELGLSLASTALQEFNELELECTVLLY 18 + LS A+ L F E + +LY Sbjct: 266 LMWLSAATFILLAFFFPETQHHNILY 291
>CASK_LAMGU (Q28451) Kappa-casein (Fragment)| Length = 125 Score = 28.5 bits (62), Expect = 7.1 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -2 Query: 290 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 168 VEP ++ T E V T V+ + + F TP V T+T Sbjct: 83 VEPPVIPTAEPVVNTVVIAEASSEFITTSTPETTTVQITST 123
>CASK_TAYTA (Q28794) Kappa-casein (Fragment)| Length = 146 Score = 28.1 bits (61), Expect = 9.2 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = -2 Query: 290 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 168 VEP L+ T E V T V+ + + F + TP AV ++T Sbjct: 104 VEPTLIPTTEPVVNTVVIPEAASEFLITNTPETTAVQVSST 144
>ALGE_PSEAE (P18895) Alginate production protein algE precursor| Length = 490 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Frame = -2 Query: 116 WRAMDDGELGLSLASTALQEFNE---LELECTVLLYFTSGL 3 WR DD ++G S + ALQ + EL+ V YF GL Sbjct: 402 WRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQGL 442
>ANP3_PSEAM (P02733) Ice-structuring protein 3 (ISP 3) (Antifreeze peptide 3)| Length = 37 Score = 28.1 bits (61), Expect = 9.2 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -2 Query: 269 TGEGAVATCVLTASDAFFALLLTPRNAAVSFTATA 165 T A A LTA++A A LT +AA + ATA Sbjct: 2 TASDAAAAAALTAABAAAAAKLTABBAAAAAAATA 36 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.126 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,899,308 Number of Sequences: 219361 Number of extensions: 325453 Number of successful extensions: 1257 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 1248 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1253 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
