ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet40b08 |
|---|---|
| Clone Library Name | barley_pub |
>RP3A_MOUSE (P47708) Rabphilin-3A (Exophilin-1)| Length = 681 Score = 32.0 bits (71), Expect = 0.79 Identities = 16/46 (34%), Positives = 20/46 (43%) Frame = +2 Query: 266 GLPGGVRLLPAQTLLPRARGDVPRARPAHAGAVRPAEHQLHDAADG 403 G PGG R P P + P + P + GAV PA + A G Sbjct: 294 GPPGGSRATPGPGRFPEQSTEAPPSDPGYPGAVAPAREERTGPAGG 339
>CO7_PONPY (Q5RAD0) Complement component C7 precursor| Length = 843 Score = 31.6 bits (70), Expect = 1.0 Identities = 16/49 (32%), Positives = 24/49 (48%) Frame = +3 Query: 183 RSLPPFYEVVAAASIIAAKLRHMCRPKEVYLVEYGCFRPRPCYRAPVAT 329 + L P YE+V ++ K ++ R E YL E+ RPC +AT Sbjct: 419 QKLTPLYELVKEVPCVSVKKLYLKRALEEYLDEFDPCHCRPCQNGGLAT 467
>PELW_DICD3 (Q05526) Pectate disaccharide-lyase (EC 4.2.2.9)| (Exopolygalacturonate lyase) (ExoPL) Length = 553 Score = 31.2 bits (69), Expect = 1.3 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 9/44 (20%) Frame = -3 Query: 296 PEAAVLHQVNL---------LWPAHVPQFSCYDAGRGDDFIERR 192 P LHQVN W AHV +SC D GR D+ +R Sbjct: 147 PYYEFLHQVNPEKTRHFIQGFWNAHVEDWSCLDLGRHGDYARQR 190
>HPSE2_ARATH (Q8L608) Heparanase-like protein 2 precursor (EC 3.2.-.-)| Length = 539 Score = 31.2 bits (69), Expect = 1.3 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Frame = +2 Query: 242 EAHVQAKGG-LPGGVRLLPAQTLLPRARGDVPRARPAHAGAVRP 370 E H+ K G L + LL + L+P A GD+P+ P G P Sbjct: 474 EYHLSPKDGDLRSKIMLLNGKPLVPTATGDIPKLEPVRHGVKSP 517
>RP3A_RAT (P47709) Rabphilin-3A (Exophilin-1)| Length = 684 Score = 30.8 bits (68), Expect = 1.8 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = +2 Query: 266 GLPGGVRLLPAQTLLPRARGDVPRARPAHAGAVRPAEHQ 382 G PGG R P P + P + P + GAV PA + Sbjct: 297 GPPGGSRAAPGPGRFPEQSTEAPPSDPGYPGAVAPAREE 335
>MA2B2_MOUSE (O54782) Epididymis-specific alpha-mannosidase precursor (EC| 3.2.1.24) (Mannosidase alpha class 2B member 2) Length = 1018 Score = 30.8 bits (68), Expect = 1.8 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%) Frame = -3 Query: 458 GYVVVRQRHAGLRAEP*PLHQPHHEVDALLVEQLRHELGVLAARRHGRAVAGSGPEAAVL 279 GY + R+ + ++ P P + + V + +E + L +LA R HG + G+G +L Sbjct: 745 GYQMQRRPYKAFKSNPIPRNY-YPMVQSAFIEDDKSRLVLLAERPHGVSSQGNGQVEVML 803 Query: 278 HQ---VNLLW 258 H+ NL W Sbjct: 804 HRRLWNNLAW 813
>DPO3_STRR6 (Q8DRA5) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1463 Score = 28.9 bits (63), Expect = 6.7 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = -3 Query: 365 EQLRHELGVLAARRHGRAVAGSGPEAAVLHQVNLLWPAH 249 E L ++LG+ A R A+A + E V+H+++ +W H Sbjct: 6 EILMNQLGMPAEMRQAPALAQANIERVVVHKISKVWEFH 44
>DPO3_STRPN (Q97SQ2) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1463 Score = 28.9 bits (63), Expect = 6.7 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = -3 Query: 365 EQLRHELGVLAARRHGRAVAGSGPEAAVLHQVNLLWPAH 249 E L ++LG+ A R A+A + E V+H+++ +W H Sbjct: 6 EILMNQLGMPAEMRQAPALAQANIERVVVHKISKVWEFH 44
>UQCR2_DEBHA (Q6BPY6) Ubiquinol-cytochrome-c reductase complex core protein 2,| mitochondrial precursor (EC 1.10.2.2) Length = 376 Score = 28.9 bits (63), Expect = 6.7 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +2 Query: 338 ARPAHAGAVRPAEHQLHDAADGEVRARRGDLRAVGVPLHT 457 A PA + P E LH+ + +RA G + +GVP+ T Sbjct: 208 ALPAGSSKTTPVE--LHNGKESRIRAAGGSVALIGVPIKT 245
>YBJT_ECOLI (P75822) Hypothetical protein ybjT| Length = 476 Score = 28.9 bits (63), Expect = 6.7 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 9/60 (15%) Frame = -3 Query: 341 VLAARRHGRAVAGSGPEAAVLHQVNLLWPAHVP---------QFSCYDAGRGDDFIERRQ 189 +LAA RH +A H+V+L WP ++P F + G G DFI + + Sbjct: 29 ILAAARHVDRLAKLQLANVSCHKVDLSWPDNLPALLQDIDTVYFLVHSMGEGGDFIAQER 88
>TRPD_CORDI (Q6NEC1) Anthranilate phosphoribosyltransferase (EC 2.4.2.18)| Length = 341 Score = 28.9 bits (63), Expect = 6.7 Identities = 18/69 (26%), Positives = 31/69 (44%) Frame = -3 Query: 371 LVEQLRHELGVLAARRHGRAVAGSGPEAAVLHQVNLLWPAHVPQFSCYDAGRGDDFIERR 192 ++ ++ ELG R H V GSG + +H +W + S Y + I R Sbjct: 206 IIAEVFRELG----RSHALVVHGSGTDEIAVHGPTTVWELRDGEISTYTITPEEIGINRY 261 Query: 191 QGAQPAGGE 165 + ++ AGG+ Sbjct: 262 ELSELAGGD 270
>SALM_DROME (P39770) Homeotic protein spalt-major| Length = 1365 Score = 28.5 bits (62), Expect = 8.7 Identities = 11/31 (35%), Positives = 15/31 (48%) Frame = -3 Query: 413 P*PLHQPHHEVDALLVEQLRHELGVLAARRH 321 P P H PHH + ++HE+ L R H Sbjct: 760 PPPHHHPHHMARSPFFNPIKHEMAALLPRPH 790
>FAB1_MYCTU (P63454) 3-oxoacyl-[acyl-carrier-protein] synthase 1 (EC 2.3.1.41)| (Beta-ketoacyl-ACP synthase 1) (KAS 1) Length = 416 Score = 28.5 bits (62), Expect = 8.7 Identities = 19/42 (45%), Positives = 23/42 (54%) Frame = +2 Query: 314 RARGDVPRARPAHAGAVRPAEHQLHDAADGEVRARRGDLRAV 439 +ARG P AR AG A H + AADG VRA R R++ Sbjct: 255 KARGAKPLARLLGAGITSDAFHMVAPAADG-VRAGRAMTRSL 295
>FAB1_MYCLE (Q9CBS7) 3-oxoacyl-[acyl-carrier-protein] synthase 1 (EC 2.3.1.41)| (Beta-ketoacyl-ACP synthase 1) (KAS 1) Length = 416 Score = 28.5 bits (62), Expect = 8.7 Identities = 19/42 (45%), Positives = 23/42 (54%) Frame = +2 Query: 314 RARGDVPRARPAHAGAVRPAEHQLHDAADGEVRARRGDLRAV 439 +ARG P AR AG A H + AADG VRA R R++ Sbjct: 255 KARGAKPLARLLGAGITSDAFHMVAPAADG-VRAGRAMTRSL 295
>FAB1_MYCBO (P63455) 3-oxoacyl-[acyl-carrier-protein] synthase 1 (EC 2.3.1.41)| (Beta-ketoacyl-ACP synthase 1) (KAS 1) Length = 416 Score = 28.5 bits (62), Expect = 8.7 Identities = 19/42 (45%), Positives = 23/42 (54%) Frame = +2 Query: 314 RARGDVPRARPAHAGAVRPAEHQLHDAADGEVRARRGDLRAV 439 +ARG P AR AG A H + AADG VRA R R++ Sbjct: 255 KARGAKPLARLLGAGITSDAFHMVAPAADG-VRAGRAMTRSL 295
>IF2_AGRT5 (Q8UJ51) Translation initiation factor IF-2| Length = 913 Score = 28.5 bits (62), Expect = 8.7 Identities = 17/50 (34%), Positives = 24/50 (48%) Frame = +2 Query: 272 PGGVRLLPAQTLLPRARGDVPRARPAHAGAVRPAEHQLHDAADGEVRARR 421 PGG + P + + G + P A RP + LHD + GE+ ARR Sbjct: 89 PGGQQQRPGSSQSQQRSGS---SAPQQRQADRPRGNVLHDLSAGEMEARR 135 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,511,622 Number of Sequences: 219361 Number of extensions: 1284692 Number of successful extensions: 3478 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3349 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3478 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
