ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet40b08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_193176.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1437 Score = 69.9 bits (35), Expect = 7e-09 Identities = 74/87 (85%) Strand = Plus / Plus Query: 270 tacctggtggagtacggctgcttccggcccagaccctgctaccgcgcgcccgtggcgacg 329 ||||||||||||||||| |||||||| ||||| || |||||||| || || | |||||| Sbjct: 208 tacctggtggagtacgggtgcttccgccccaggccgtgctaccgggccccgttcgcgacg 267 Query: 330 tgccgcgagcacgcccagctcatgccg 356 |||| ||||||||||| || |||||| Sbjct: 268 tgcctggagcacgcccacctgatgccg 294
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 69.9 bits (35), Expect = 7e-09 Identities = 74/87 (85%) Strand = Plus / Plus Query: 270 tacctggtggagtacggctgcttccggcccagaccctgctaccgcgcgcccgtggcgacg 329 ||||||||||||||||| |||||||| ||||| || |||||||| || || | |||||| Sbjct: 19055628 tacctggtggagtacgggtgcttccgccccaggccgtgctaccgggccccgttcgcgacg 19055687 Query: 330 tgccgcgagcacgcccagctcatgccg 356 |||| ||||||||||| || |||||| Sbjct: 19055688 tgcctggagcacgcccacctgatgccg 19055714
>dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0702H08 Length = 166899 Score = 69.9 bits (35), Expect = 7e-09 Identities = 74/87 (85%) Strand = Plus / Plus Query: 270 tacctggtggagtacggctgcttccggcccagaccctgctaccgcgcgcccgtggcgacg 329 ||||||||||||||||| |||||||| ||||| || |||||||| || || | |||||| Sbjct: 21045 tacctggtggagtacgggtgcttccgccccaggccgtgctaccgggccccgttcgcgacg 21104 Query: 330 tgccgcgagcacgcccagctcatgccg 356 |||| ||||||||||| || |||||| Sbjct: 21105 tgcctggagcacgcccacctgatgccg 21131
>dbj|AK101002.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147G07, full insert sequence Length = 1933 Score = 69.9 bits (35), Expect = 7e-09 Identities = 74/87 (85%) Strand = Plus / Plus Query: 270 tacctggtggagtacggctgcttccggcccagaccctgctaccgcgcgcccgtggcgacg 329 ||||||||||||||||| |||||||| ||||| || |||||||| || || | |||||| Sbjct: 284 tacctggtggagtacgggtgcttccgccccaggccgtgctaccgggccccgttcgcgacg 343 Query: 330 tgccgcgagcacgcccagctcatgccg 356 |||| ||||||||||| || |||||| Sbjct: 344 tgcctggagcacgcccacctgatgccg 370
>gb|DQ429568.1| Sorghum propinquum locus pSB1120 genomic sequence Length = 781 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 270 tacctggtggagtacggctgcttccggcccagaccctgctaccgcgcgcccgtggcgacg 329 ||||| ||||||||||||||||||||||||| ||||||| ||| ||||| | || ||| Sbjct: 588 tacctcgtggagtacggctgcttccggcccaagccctgcttccgggcgccgtttgccacg 647 Query: 330 tgccgcgagcacgcc 344 |||| ||||||||| Sbjct: 648 tgcctggagcacgcc 662
>gb|DQ429567.1| Sorghum bicolor voucher PI585454 locus pSB1120 genomic sequence Length = 791 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 270 tacctggtggagtacggctgcttccggcccagaccctgctaccgcgcgcccgtggcgacg 329 ||||| ||||||||||||||||||||||||| ||||||| ||| ||||| | || ||| Sbjct: 598 tacctcgtggagtacggctgcttccggcccaagccctgcttccgggcgccgttcgccacg 657 Query: 330 tgccgcgagcacgcc 344 |||| ||||||||| Sbjct: 658 tgcctggagcacgcc 672
>gb|DQ429566.1| Sorghum bicolor voucher PI267539 locus pSB1120 genomic sequence Length = 788 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 270 tacctggtggagtacggctgcttccggcccagaccctgctaccgcgcgcccgtggcgacg 329 ||||| ||||||||||||||||||||||||| ||||||| ||| ||||| | || ||| Sbjct: 595 tacctcgtggagtacggctgcttccggcccaagccctgcttccgggcgccgttcgccacg 654 Query: 330 tgccgcgagcacgcc 344 |||| ||||||||| Sbjct: 655 tgcctggagcacgcc 669
>gb|DQ429565.1| Sorghum bicolor voucher PI267408 locus pSB1120 genomic sequence Length = 788 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 270 tacctggtggagtacggctgcttccggcccagaccctgctaccgcgcgcccgtggcgacg 329 ||||| ||||||||||||||||||||||||| ||||||| ||| ||||| | || ||| Sbjct: 595 tacctcgtggagtacggctgcttccggcccaagccctgcttccgggcgccgttcgccacg 654 Query: 330 tgccgcgagcacgcc 344 |||| ||||||||| Sbjct: 655 tgcctggagcacgcc 669
>gb|DQ429564.1| Sorghum bicolor voucher PI221607 locus pSB1120 genomic sequence Length = 788 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 270 tacctggtggagtacggctgcttccggcccagaccctgctaccgcgcgcccgtggcgacg 329 ||||| ||||||||||||||||||||||||| ||||||| ||| ||||| | || ||| Sbjct: 595 tacctcgtggagtacggctgcttccggcccaagccctgcttccgggcgccgttcgccacg 654 Query: 330 tgccgcgagcacgcc 344 |||| ||||||||| Sbjct: 655 tgcctggagcacgcc 669
>gb|DQ429563.1| Sorghum bicolor voucher PI152702 locus pSB1120 genomic sequence Length = 788 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 270 tacctggtggagtacggctgcttccggcccagaccctgctaccgcgcgcccgtggcgacg 329 ||||| ||||||||||||||||||||||||| ||||||| ||| ||||| | || ||| Sbjct: 595 tacctcgtggagtacggctgcttccggcccaagccctgcttccgggcgccgttcgccacg 654 Query: 330 tgccgcgagcacgcc 344 |||| ||||||||| Sbjct: 655 tgcctggagcacgcc 669
>gb|DQ429562.1| Sorghum bicolor voucher NSL92371 locus pSB1120 genomic sequence Length = 788 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 270 tacctggtggagtacggctgcttccggcccagaccctgctaccgcgcgcccgtggcgacg 329 ||||| ||||||||||||||||||||||||| ||||||| ||| ||||| | || ||| Sbjct: 595 tacctcgtggagtacggctgcttccggcccaagccctgcttccgggcgccgttcgccacg 654 Query: 330 tgccgcgagcacgcc 344 |||| ||||||||| Sbjct: 655 tgcctggagcacgcc 669
>gb|DQ429561.1| Sorghum bicolor voucher NSL87902b locus pSB1120 genomic sequence Length = 788 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 270 tacctggtggagtacggctgcttccggcccagaccctgctaccgcgcgcccgtggcgacg 329 ||||| ||||||||||||||||||||||||| ||||||| ||| ||||| | || ||| Sbjct: 595 tacctcgtggagtacggctgcttccggcccaagccctgcttccgggcgccgttcgccacg 654 Query: 330 tgccgcgagcacgcc 344 |||| ||||||||| Sbjct: 655 tgcctggagcacgcc 669
>gb|DQ429560.1| Sorghum bicolor voucher NSL87902a locus pSB1120 genomic sequence Length = 788 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 270 tacctggtggagtacggctgcttccggcccagaccctgctaccgcgcgcccgtggcgacg 329 ||||| ||||||||||||||||||||||||| ||||||| ||| ||||| | || ||| Sbjct: 595 tacctcgtggagtacggctgcttccggcccaagccctgcttccgggcgccgttcgccacg 654 Query: 330 tgccgcgagcacgcc 344 |||| ||||||||| Sbjct: 655 tgcctggagcacgcc 669
>gb|DQ429559.1| Sorghum bicolor voucher NSL87666 locus pSB1120 genomic sequence Length = 788 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 270 tacctggtggagtacggctgcttccggcccagaccctgctaccgcgcgcccgtggcgacg 329 ||||| ||||||||||||||||||||||||| ||||||| ||| ||||| | || ||| Sbjct: 595 tacctcgtggagtacggctgcttccggcccaagccctgcttccgggcgccgttcgccacg 654 Query: 330 tgccgcgagcacgcc 344 |||| ||||||||| Sbjct: 655 tgcctggagcacgcc 669
>gb|DQ429558.1| Sorghum bicolor voucher NSL77217 locus pSB1120 genomic sequence Length = 790 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 270 tacctggtggagtacggctgcttccggcccagaccctgctaccgcgcgcccgtggcgacg 329 ||||| ||||||||||||||||||||||||| ||||||| ||| ||||| | || ||| Sbjct: 597 tacctcgtggagtacggctgcttccggcccaagccctgcttccgggcgccgttcgccacg 656 Query: 330 tgccgcgagcacgcc 344 |||| ||||||||| Sbjct: 657 tgcctggagcacgcc 671
>gb|DQ429557.1| Sorghum bicolor voucher NSL77034 locus pSB1120 genomic sequence Length = 788 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 270 tacctggtggagtacggctgcttccggcccagaccctgctaccgcgcgcccgtggcgacg 329 ||||| ||||||||||||||||||||||||| ||||||| ||| ||||| | || ||| Sbjct: 595 tacctcgtggagtacggctgcttccggcccaagccctgcttccgggcgccgttcgccacg 654 Query: 330 tgccgcgagcacgcc 344 |||| ||||||||| Sbjct: 655 tgcctggagcacgcc 669
>gb|DQ429556.1| Sorghum bicolor voucher NSL56174 locus pSB1120 genomic sequence Length = 788 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 270 tacctggtggagtacggctgcttccggcccagaccctgctaccgcgcgcccgtggcgacg 329 ||||| ||||||||||||||||||||||||| ||||||| ||| ||||| | || ||| Sbjct: 595 tacctcgtggagtacggctgcttccggcccaagccctgcttccgggcgccgttcgccacg 654 Query: 330 tgccgcgagcacgcc 344 |||| ||||||||| Sbjct: 655 tgcctggagcacgcc 669
>gb|DQ429555.1| Sorghum bicolor voucher NSL56003 locus pSB1120 genomic sequence Length = 788 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 270 tacctggtggagtacggctgcttccggcccagaccctgctaccgcgcgcccgtggcgacg 329 ||||| ||||||||||||||||||||||||| ||||||| ||| ||||| | || ||| Sbjct: 595 tacctcgtggagtacggctgcttccggcccaagccctgcttccgggcgccgttcgccacg 654 Query: 330 tgccgcgagcacgcc 344 |||| ||||||||| Sbjct: 655 tgcctggagcacgcc 669
>gb|DQ429554.1| Sorghum bicolor voucher NSL55243 locus pSB1120 genomic sequence Length = 790 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 270 tacctggtggagtacggctgcttccggcccagaccctgctaccgcgcgcccgtggcgacg 329 ||||| ||||||||||||||||||||||||| ||||||| ||| ||||| | || ||| Sbjct: 597 tacctcgtggagtacggctgcttccggcccaagccctgcttccgggcgccgttcgccacg 656 Query: 330 tgccgcgagcacgcc 344 |||| ||||||||| Sbjct: 657 tgcctggagcacgcc 671
>gb|DQ429553.1| Sorghum bicolor voucher NSL51365 locus pSB1120 genomic sequence Length = 788 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 270 tacctggtggagtacggctgcttccggcccagaccctgctaccgcgcgcccgtggcgacg 329 ||||| ||||||||||||||||||||||||| ||||||| ||| ||||| | || ||| Sbjct: 595 tacctcgtggagtacggctgcttccggcccaagccctgcttccgggcgccgttcgccacg 654 Query: 330 tgccgcgagcacgcc 344 |||| ||||||||| Sbjct: 655 tgcctggagcacgcc 669
>gb|DQ429552.1| Sorghum bicolor voucher NSL51030 locus pSB1120 genomic sequence Length = 791 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 270 tacctggtggagtacggctgcttccggcccagaccctgctaccgcgcgcccgtggcgacg 329 ||||| ||||||||||||||||||||||||| ||||||| ||| ||||| | || ||| Sbjct: 598 tacctcgtggagtacggctgcttccggcccaagccctgcttccgggcgccgttcgccacg 657 Query: 330 tgccgcgagcacgcc 344 |||| ||||||||| Sbjct: 658 tgcctggagcacgcc 672
>gb|DQ429551.1| Sorghum bicolor voucher NSL50875 locus pSB1120 genomic sequence Length = 790 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 270 tacctggtggagtacggctgcttccggcccagaccctgctaccgcgcgcccgtggcgacg 329 ||||| ||||||||||||||||||||||||| ||||||| ||| ||||| | || ||| Sbjct: 597 tacctcgtggagtacggctgcttccggcccaagccctgcttccgggcgccgttcgccacg 656 Query: 330 tgccgcgagcacgcc 344 |||| ||||||||| Sbjct: 657 tgcctggagcacgcc 671
>gb|DQ429550.1| Sorghum bicolor voucher BTx623 locus pSB1120 genomic sequence Length = 788 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 270 tacctggtggagtacggctgcttccggcccagaccctgctaccgcgcgcccgtggcgacg 329 ||||| ||||||||||||||||||||||||| ||||||| ||| ||||| | || ||| Sbjct: 595 tacctcgtggagtacggctgcttccggcccaagccctgcttccgggcgccgttcgccacg 654 Query: 330 tgccgcgagcacgcc 344 |||| ||||||||| Sbjct: 655 tgcctggagcacgcc 669
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 157 cgggcgagctcaccgccggcgggctgcgctc 187 |||| |||| ||||||||||||||||||||| Sbjct: 3262724 cgggtgagcacaccgccggcgggctgcgctc 3262754
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 157 cgggcgagctcaccgccggcgggctgcgctc 187 |||| |||| ||||||||||||||||||||| Sbjct: 3263080 cgggtgagcgcaccgccggcgggctgcgctc 3263110
>gb|DQ397584.1| Cenarchaeum symbiosum clone C19G04, complete sequence Length = 46841 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 155 atcgggcgagctcaccgccggc 176 |||||||||||||||||||||| Sbjct: 24633 atcgggcgagctcaccgccggc 24612 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 atcgggcgagctcaccgccgg 175 ||||||||||||||||||||| Sbjct: 37449 atcgggcgagctcaccgccgg 37429
>gb|AC009534.9|AC009534 Drosophila melanogaster, chromosome 2L, region 27F-27F, BAC clone BACR01E19, complete sequence Length = 161009 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 120 gtggccgtagctgctgctgct 140 ||||||||||||||||||||| Sbjct: 52956 gtggccgtagctgctgctgct 52976
>gb|U84292.1|DMU84292 Drosophila melanogaster wingless protein (wg) gene, partial cds Length = 5257 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 120 gtggccgtagctgctgctgct 140 ||||||||||||||||||||| Sbjct: 2261 gtggccgtagctgctgctgct 2281
>gb|AE003617.3| Drosophila melanogaster chromosome 2L, section 26 of 83 of the complete sequence Length = 257317 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 120 gtggccgtagctgctgctgct 140 ||||||||||||||||||||| Sbjct: 9318 gtggccgtagctgctgctgct 9338
>emb|AJ251968.1|DME251968 Drosophila melanogaster wingless gene promoter region Length = 8685 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 120 gtggccgtagctgctgctgct 140 ||||||||||||||||||||| Sbjct: 5863 gtggccgtagctgctgctgct 5883
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 tgaagtcgtcgccgcggcca 222 |||||||||||||||||||| Sbjct: 1990240 tgaagtcgtcgccgcggcca 1990221
>gb|AC092143.4| Homo sapiens chromosome 16 clone RP11-566K11, complete sequence Length = 146534 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 tagctgctgctgctttattt 146 |||||||||||||||||||| Sbjct: 125243 tagctgctgctgctttattt 125262
>ref|XM_745812.1| Aspergillus fumigatus Af293 hypothetical protein (Afu6g10160) partial mRNA Length = 987 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ctgggtagtagcagacactg 32 |||||||||||||||||||| Sbjct: 120 ctgggtagtagcagacactg 101
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 gctgctgctttatttctagc 151 |||||||||||||||||||| Sbjct: 578524 gctgctgctttatttctagc 578543
>emb|AL606446.1|OSJN00016 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F16, complete sequence Length = 119535 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 tagctgctgctgctttattt 146 |||||||||||||||||||| Sbjct: 71798 tagctgctgctgctttattt 71817
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 caacttcatgatgcggctga 399 |||||||||||||||||||| Sbjct: 10198817 caacttcatgatgcggctga 10198798
>gb|DP000055.1| Pan troglodytes chromosome Y chry_random_1 genomic scaffold Length = 276070 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 caacttcatgatgcggctga 399 |||||||||||||||||||| Sbjct: 112869 caacttcatgatgcggctga 112850
>gb|DP000056.1| Pan troglodytes chromosome Y chry_random_3 genomic scaffold Length = 331329 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 caacttcatgatgcggctga 399 |||||||||||||||||||| Sbjct: 176167 caacttcatgatgcggctga 176148
>gb|AC164571.3| Pan troglodytes BAC clone CH251-967O8 from chromosome y, complete sequence Length = 225200 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 caacttcatgatgcggctga 399 |||||||||||||||||||| Sbjct: 191932 caacttcatgatgcggctga 191913
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 tagctgctgctgctttattt 146 |||||||||||||||||||| Sbjct: 33425919 tagctgctgctgctttattt 33425938
>gb|AC133919.3| Homo sapiens chromosome 16 clone RP11-356C4, complete sequence Length = 210446 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 tagctgctgctgctttattt 146 |||||||||||||||||||| Sbjct: 22616 tagctgctgctgctttattt 22635
>gb|AC175060.2| Pan troglodytes BAC clone CH251-724O9 from chromosome y, complete sequence Length = 196548 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 caacttcatgatgcggctga 399 |||||||||||||||||||| Sbjct: 33348 caacttcatgatgcggctga 33329
>gb|AC090023.20| Homo sapiens 12 BAC RP11-221N13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 114177 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 gttttgtcttgagtagcttc 101 |||||||||||||||||||| Sbjct: 21011 gttttgtcttgagtagcttc 20992
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gccgcgagcacgcccagctc 350 |||||||||||||||||||| Sbjct: 3422887 gccgcgagcacgcccagctc 3422868
>gb|AC172373.3| Pan troglodytes BAC clone CH251-1081D19 from chromosome y, complete sequence Length = 194913 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 caacttcatgatgcggctga 399 |||||||||||||||||||| Sbjct: 187138 caacttcatgatgcggctga 187157
>gb|AC163766.3| Pan troglodytes BAC clone CH251-115P4 from chromosome y, complete sequence Length = 185225 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 caacttcatgatgcggctga 399 |||||||||||||||||||| Sbjct: 32349 caacttcatgatgcggctga 32368
>gb|AC163726.3| Pan troglodytes BAC clone CH251-653B19 from chromosome y, complete sequence Length = 207364 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 caacttcatgatgcggctga 399 |||||||||||||||||||| Sbjct: 52216 caacttcatgatgcggctga 52197
>gb|AY623658.2| Aeromicrobium erythreum putative transcriptional repressor and putative dehydrogenase/reductase genes, complete cds; erythromycin biosynthesis gene cluster, complete sequence; putative oxidoreductase and LipN genes, complete cds; monoamine oxidase gene, partial cds; and unknown gene Length = 61845 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 ggcgacgtgccgcgagcacg 342 |||||||||||||||||||| Sbjct: 20428 ggcgacgtgccgcgagcacg 20409
>gb|AC163728.4| Pan troglodytes BAC clone CH251-589C1 from chromosome y, complete sequence Length = 206451 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 caacttcatgatgcggctga 399 |||||||||||||||||||| Sbjct: 48255 caacttcatgatgcggctga 48236
>gb|AC163716.3| Pan troglodytes BAC clone CH251-828J24 from chromosome y, complete sequence Length = 165274 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 caacttcatgatgcggctga 399 |||||||||||||||||||| Sbjct: 118315 caacttcatgatgcggctga 118334
>emb|AJ243907.1|RNO243907 Rattus norvegicus partial cis gene, exon 1 Length = 904 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 293 ccggcccagaccctgctaccgcgc 316 ||||||||||||||||| |||||| Sbjct: 243 ccggcccagaccctgcttccgcgc 266
>gb|AC163727.3| Pan troglodytes BAC clone CH251-1132L6 from chromosome y, complete sequence Length = 191546 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 caacttcatgatgcggctga 399 |||||||||||||||||||| Sbjct: 112858 caacttcatgatgcggctga 112839
>gb|AY655709.1| Rubrivivax gelatinosus cytochrome bd-type quinol oxidase subunit 1 (qoxA), cytochrome bd-type quinol oxidase subunit 2 (qoxB), hypothetical protein, and putative endoribonuclease genes, complete cds Length = 4440 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 tcgtcgccgcggccagcatc 227 |||||||||||||||||||| Sbjct: 3544 tcgtcgccgcggccagcatc 3563
>emb|AL592188.60| Human DNA sequence from clone RP11-337M7 on chromosome 22, complete sequence Length = 161802 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 caacttcatgatgcggctga 399 |||||||||||||||||||| Sbjct: 47794 caacttcatgatgcggctga 47813
>emb|AL606685.3|OSJN00090 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0071I13, complete sequence Length = 152264 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 tagctgctgctgctttattt 146 |||||||||||||||||||| Sbjct: 2108 tagctgctgctgctttattt 2127 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,609,936 Number of Sequences: 3902068 Number of extensions: 3609936 Number of successful extensions: 69292 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68822 Number of HSP's gapped (non-prelim): 470 length of query: 463 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 441 effective length of database: 17,147,199,772 effective search space: 7561915099452 effective search space used: 7561915099452 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
