Clone Information

BLAST Search Result

Clone Name	baet40a02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	NAC90_ARATH (Q9FMR3) NAC domain-containing protein 90 (ANAC090)	32	0.80
2	EMBP1_CAVPO (P22032) Eosinophil granule major basic protein 1 pr...	32	0.80
3	FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing ...	32	0.80
4	POLG_BVDVN (P19711) Genome polyprotein [Contains: N-terminal pro...	32	1.0
5	ZN179_HUMAN (Q9ULX5) Zinc finger protein 179 (Brain finger prote...	31	1.4
6	TRBH_AGRTU (P54916) Conjugal transfer protein trbH precursor	31	1.4
7	BGAL_XANMN (P48982) Beta-galactosidase precursor (EC 3.2.1.23) (...	31	1.8
8	PRLB_ACHLY (P27458) Beta-lytic metalloendopeptidase precursor (E...	31	1.8
9	PPE30_MYCTU (P0A692) Hypothetical PPE-family protein PPE30	31	1.8
10	PPE30_MYCBO (P0A693) Hypothetical PPE-family protein PPE30	31	1.8
11	RIMB2_RAT (Q9JIR1) RIM-binding protein 2 (RIM-BP2)	30	2.3
12	TOP1_XYLFA (Q9PEV8) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoi...	30	2.3
13	CTGE4_HUMAN (Q8IX94) Cutaneous T-cell lymphoma-associated antige...	30	3.1
14	IF2_PROAC (Q6A7M5) Translation initiation factor IF-2	30	3.1
15	NAC61_ARATH (Q9M290) Putative NAC domain-containing protein 61 (...	30	4.0
16	PACC_CEPAC (Q96X49) pH-response transcription factor pacC/RIM101	30	4.0
17	SYN1_RAT (P09951) Synapsin-1 (Synapsin I)	30	4.0
18	FOXD1_MOUSE (Q61345) Forkhead box protein D1 (Forkhead-related p...	30	4.0
19	PACC_FUSOX (Q870A3) pH-response transcription factor pacC/RIM101	30	4.0
20	CCD16_BRARE (Q6P0I6) Coiled-coil domain-containing protein 16	30	4.0
21	WAPL_DROME (Q9W517) Protein wings apart-like (Protein parallel s...	30	4.0
22	CTGE6_HUMAN (Q86UF2) Protein cTAGE-6 (cTAGE family member 6)	30	4.0
23	RS11_METKA (Q8TVB9) 30S ribosomal protein S11P	30	4.0
24	MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia p...	30	4.0
25	EMBP_RAT (Q63189) Eosinophil granule major basic protein precurs...	30	4.0
26	SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)	29	5.2
27	MOAE_KLEAE (P54795) Protein moaE	29	5.2
28	FPG_SYNY3 (P74290) Formamidopyrimidine-DNA glycosylase (EC 3.2.2...	29	5.2
29	TOP1_MYCTU (P0A620) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoi...	29	5.2
30	TOP1_MYCBO (P0A621) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoi...	29	5.2
31	PHHY_PSEFL (P00438) P-hydroxybenzoate hydroxylase (EC 1.14.13.2)...	29	6.8
32	PHHY_PSEAE (P20586) P-hydroxybenzoate hydroxylase (EC 1.14.13.2)...	29	6.8
33	PACC_GIBMO (Q873X0) pH-response transcription factor pacC/RIM101	29	6.8
34	TOP1_XYLFT (Q87AQ6) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoi...	29	6.8
35	RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein	29	6.8
36	MPA5A_LOLPR (Q40240) Major pollen allergen Lol p 5a precursor (L...	29	6.8
37	K1PF_RHOCA (P23386) 1-phosphofructokinase (EC 2.7.1.56) (Fructos...	29	6.8
38	PANB_RHOBA (Q7UM39) 3-methyl-2-oxobutanoate hydroxymethyltransfe...	29	6.8
39	EMBP_MOUSE (Q61878) Eosinophil granule major basic protein precu...	29	6.8
40	MUS81_RAT (Q4KM32) Crossover junction endonuclease MUS81 (EC 3.1...	29	6.8
41	PROB_XANAC (Q8PK34) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glut...	29	6.8
42	PACC_GIBFU (Q8J1U9) pH-response transcription factor pacC/RIM101	29	6.8
43	HEM2_CHLRE (Q42682) Delta-aminolevulinic acid dehydratase, chlor...	28	8.9
44	YMH7_CAEEL (P34474) Hypothetical protein F58A4.7 in chromosome III	28	8.9
45	SDK_CAEBR (Q60ZN5) Protein sidekick homolog precursor (Neuronal ...	28	8.9
46	PROB_XANOR (Q5GZF1) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glut...	28	8.9
47	JDP_DROME (Q9TVP3) J domain-containing protein (dJDP)	28	8.9
48	RB97D_DROME (Q02926) Ribonucleoprotein RB97D	28	8.9
49	MRP6_MOUSE (Q9R1S7) Multidrug resistance-associated protein 6 (A...	28	8.9
50	Y2247_MYCBO (P65822) Hypothetical protein Mb2247c precursor	28	8.9
51	Y2223_MYCTU (P65821) Hypothetical protein Rv2223c/MT2281 precursor	28	8.9

>NAC90_ARATH (Q9FMR3) NAC domain-containing protein 90 (ANAC090)|
          Length = 235

 Score = 32.0 bits (71), Expect = 0.80
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = +2

Query: 125 SGYWPAQHSSGSIVQADGQRAAARCVALCANGGAPRGR---WRCSPY 256
           SGYW A  S G +   D +   A+   +   G AP GR   W+ + Y
Sbjct: 89  SGYWKATGSPGPVFSKDNKMIGAKKTMVFYTGKAPTGRKTKWKMNEY 135

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>EMBP1_CAVPO (P22032) Eosinophil granule major basic protein 1 precursor (MBP-1)|
          Length = 233

 Score = 32.0 bits (71), Expect = 0.80
 Identities = 17/34 (50%), Positives = 18/34 (52%)
 Frame = +2

Query: 176 GQRAAARCVALCANGGAPRGRWRCSPYCRRRPHV 277
           G R   RCV LCA G    G WR S   +RRP V
Sbjct: 201 GGRQRGRCVTLCARG----GHWRRSHCGKRRPFV 230

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>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X|
           protein 1)
          Length = 415

 Score = 32.0 bits (71), Expect = 0.80
 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -2

Query: 419 LAVGASAASFGLGMHLPPPVGARAMNV-ATGASSSSASLRMCLPAPTVARGDVFGNRAST 243
           LA  A AA  G     P  VG +   V AT A S++ S  +  P P            ST
Sbjct: 98  LAAAAQAAQMGQTQIGPQIVGQQGQPVVATTAGSTNGSAAVTQPDP------------ST 145

Query: 242 STGPSVPRRWHI 207
           S+GP  P+R H+
Sbjct: 146 SSGPDGPKRLHV 157

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>POLG_BVDVN (P19711) Genome polyprotein [Contains: N-terminal protease (EC|
            3.4.22.-) (N-pro) (Autoprotease p20); Capsid protein C;
            E(rns) glycoprotein (gp44/48); Envelope glycoprotein E1
            (gp33); Envelope glycoprotein E2 (gp55); p7;
            Nonstructural protein 2
          Length = 3988

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 363  GWCTRHERGHRRLFVEREPQDVPPCADC 280
            G C+R +  HRR  ++REP+    CA+C
Sbjct: 1536 GMCSRCQGKHRRFEMDREPKSARYCAEC 1563

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>ZN179_HUMAN (Q9ULX5) Zinc finger protein 179 (Brain finger protein) (RING|
           finger protein 112)
          Length = 632

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 31/105 (29%), Positives = 39/105 (37%), Gaps = 13/105 (12%)
 Frame = +1

Query: 160 HR-PGRRPACCSTVRGTMCQRRGTEGPVEVLALLPKTSPRATVGAGRHILRLALDEEAPV 336
           HR PG  P CC   R    Q+RG     E + LLP+             L  AL E  PV
Sbjct: 84  HRLPGCEPPCCPECRKICKQKRGLRSLGEKMKLLPQRP-----------LPPALQETCPV 132

Query: 337 AT---FMARAPTGGG---------RCIPSPKLAAEAPTASVSCAG 435
                 + R    GG         RC+  P LA + P   ++  G
Sbjct: 133 RAEPLLLVRINASGGLILRMGAINRCLKHP-LARDTPVCLLAVLG 176

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>TRBH_AGRTU (P54916) Conjugal transfer protein trbH precursor|
          Length = 159

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 21/52 (40%), Positives = 25/52 (48%)
 Frame = +1

Query: 160 HRPGRRPACCSTVRGTMCQRRGTEGPVEVLALLPKTSPRATVGAGRHILRLA 315
           H PG   AC  TV  + CQ   TEG V   A    + P A+  AG  + RLA
Sbjct: 14  HMPGLAAACILTVLLSGCQSIDTEGLVASNAPPEISGPAASAIAGDMVSRLA 65

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>BGAL_XANMN (P48982) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)|
          Length = 598

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = -2

Query: 395 SFGLGMHLPPPVGARAMNVATGASSSSASLRMCLPAPTVARGDVFGNRASTSTGPSVPRR 216
           +F L M  P  +         G +    +LR+  P  T      FG   + + G ++ R 
Sbjct: 503 AFPLPMRTPDSIRGWTGKAVQGPAFHRGTLRIGTPTDTYLDMRAFGKGFAWANGVNLGRH 562

Query: 215 WHIVPRTVL 189
           W+I P+T L
Sbjct: 563 WNIGPQTAL 571

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>PRLB_ACHLY (P27458) Beta-lytic metalloendopeptidase precursor (EC 3.4.24.32)|
           (Beta-lytic protease)
          Length = 374

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 13/65 (20%)
 Frame = +2

Query: 104 SREQLHWSGYWPAQHSSGSIVQADG--QRA---AARCVALCANGGAP--------RGRWR 244
           S E  HW+GY      S S+ +ADG  +RA   +AR +   A+  AP        R RWR
Sbjct: 62  SEEISHWAGY---SGISRSVDRADGAAERAVTPSARRIVRSASWRAPTASARRPARSRWR 118

Query: 245 CSPYC 259
           C+  C
Sbjct: 119 CASRC 123

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>PPE30_MYCTU (P0A692) Hypothetical PPE-family protein PPE30|
          Length = 463

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 22/73 (30%), Positives = 34/73 (46%)
 Frame = -2

Query: 458 SSRLPAPTPAHDTLAVGASAASFGLGMHLPPPVGARAMNVATGASSSSASLRMCLPAPTV 279
           SS L +  PA   ++ GAS A    GM +PP   A    + T A+  S++    +PA  +
Sbjct: 297 SSGLGSTAPA---ISAGASQAGSVGGMSVPPSWAAATPAIRTVAAVFSSTGLQAVPAAAI 353

Query: 278 ARGDVFGNRASTS 240
           + G +    A  S
Sbjct: 354 SEGSLLSQMALAS 366

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>PPE30_MYCBO (P0A693) Hypothetical PPE-family protein PPE30|
          Length = 463

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 22/73 (30%), Positives = 34/73 (46%)
 Frame = -2

Query: 458 SSRLPAPTPAHDTLAVGASAASFGLGMHLPPPVGARAMNVATGASSSSASLRMCLPAPTV 279
           SS L +  PA   ++ GAS A    GM +PP   A    + T A+  S++    +PA  +
Sbjct: 297 SSGLGSTAPA---ISAGASQAGSVGGMSVPPSWAAATPAIRTVAAVFSSTGLQAVPAAAI 353

Query: 278 ARGDVFGNRASTS 240
           + G +    A  S
Sbjct: 354 SEGSLLSQMALAS 366

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>RIMB2_RAT (Q9JIR1) RIM-binding protein 2 (RIM-BP2)|
          Length = 1049

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
 Frame = +2

Query: 53  PARRPLPPLKKTLQAGASRE--QLHW-------SGYWPAQHSSGSIVQADGQRAAARCVA 205
           PA  P PP   T+QAGA+    Q+ W       +G     + +G  V A GQR  A  +A
Sbjct: 480 PAGPPAPPQDVTVQAGATTASVQVSWKPPALTPTGLSNGANVTGYGVYAKGQR-VAEVIA 538

Query: 206 LCANGGA 226
             ANG A
Sbjct: 539 PTANGAA 545

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>TOP1_XYLFA (Q9PEV8) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
           (Omega-protein) (Relaxing enzyme) (Untwisting enzyme)
           (Swivelase)
          Length = 815

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +2

Query: 29  LTSAEKKGPARRPLPPLKKTLQAGASRE--QLHWSGYWPAQHSSGSIVQADGQR 184
           L++   + PA R +   ++ ++A  +RE   +H     PAQH S  +++ DGQ+
Sbjct: 166 LSAGRVQSPALRMIVEREEEIEAFITREYWSIHAECAHPAQHFSAKLIKLDGQK 219

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>CTGE4_HUMAN (Q8IX94) Cutaneous T-cell lymphoma-associated antigen 4 (cTAGE-4|
           protein)
          Length = 504

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = +2

Query: 2   PPTSPTGGSLTSAEKKGPARR---PLPPLKKTLQAGASREQLHWSGYWPAQHSSG 157
           PP +P  G L   + +GP  R   P PP       GASR      GY+P +   G
Sbjct: 422 PPLAPISGPLFPVDTRGPFMRRGPPFPPPPPGTMFGASR------GYFPPRDFPG 470

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>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2|
          Length = 964

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
 Frame = +1

Query: 163 RPGRRPAC--CSTVRGTMCQRRGTEGPVEVLALLPKTSPRATVGAGRHILRLALDEEAPV 336
           +PGR  A    +T R  + +  G     E  A  P++ P  T   G+++ +       P 
Sbjct: 110 KPGRSSAARTSATPRPGLIKSSGASSQQEPPAAKPESKP--TPKPGQNVPKPHAPAPKPK 167

Query: 337 ATFMARAPTGGGRCIPSPKLAAEAPTASVSCAGVGAGRR 453
               +++P  G R  P P  +A  P+A+      GAGRR
Sbjct: 168 PGAPSKSPKPGARPGPRPGGSAGLPSAARPGPRPGAGRR 206

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>NAC61_ARATH (Q9M290) Putative NAC domain-containing protein 61 (ANAC061)|
          Length = 228

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +2

Query: 125 SGYWPAQHSSGSIVQADGQRAAARCVALCANGGAPRGR---WRCSPY 256
           SGYW A  S G +   D +    +   +   G AP GR   W+ + Y
Sbjct: 88  SGYWKATGSPGPVFSPDNRVIGVKKTMVFYTGKAPTGRKTKWKMNEY 134

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>PACC_CEPAC (Q96X49) pH-response transcription factor pacC/RIM101|
          Length = 621

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = -2

Query: 458 SSRLPAPTPAHDTLAVGASAASFGLGMHLPPPVGARAMNVATGASSSSASLRM-CLPAPT 282
           S+  PA TP        +SA S+  G H P P  A AM+  +  SS+S S+    LP   
Sbjct: 402 STGTPAVTPP-------SSAVSYTSG-HSPSP-SAPAMSPQSRHSSTSGSVMYPSLPTSL 452

Query: 281 VARGDVFGNRASTSTGPS 228
            A    FG   +T+ GPS
Sbjct: 453 PAVSQGFGQSTTTTLGPS 470

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>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)|
          Length = 704

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 23/82 (28%), Positives = 34/82 (41%)
 Frame = -2

Query: 464 PDSSRLPAPTPAHDTLAVGASAASFGLGMHLPPPVGARAMNVATGASSSSASLRMCLPAP 285
           P   RLP+PT A    A  A+  + G G    P        VA G  +  A+     P+P
Sbjct: 501 PLPQRLPSPTAAPQQSASQATPMTQGQGRQSRP--------VAGGPGAPPAARPPASPSP 552

Query: 284 TVARGDVFGNRASTSTGPSVPR 219
               G     R ++ +GP+ P+
Sbjct: 553 QRQAGPPQATRQASISGPAPPK 574

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>FOXD1_MOUSE (Q61345) Forkhead box protein D1 (Forkhead-related protein FKHL8)|
           (Forkhead-related transcription factor 4) (FREAC-4)
           (Brain factor-2) (HFH-BF-2)
          Length = 456

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 8/83 (9%)
 Frame = -2

Query: 452 RLPAPTPAHDTLAVGASAASFGLGMHLPPPV--------GARAMNVATGASSSSASLRMC 297
           +LP   P     A  A+AA+     H PPP         GA A    T     S +L   
Sbjct: 281 QLPPCAPPSALFAAAAAAAAAAFHPHSPPPPPPPPPPPPGAAAELARTAFGYRSHALAAA 340

Query: 296 LPAPTVARGDVFGNRASTSTGPS 228
           LP P  A     G R + +   S
Sbjct: 341 LPGPLQAAAVKAGGRGAAALARS 363

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>PACC_FUSOX (Q870A3) pH-response transcription factor pacC/RIM101|
          Length = 609

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 21/65 (32%), Positives = 33/65 (50%)
 Frame = -2

Query: 422 TLAVGASAASFGLGMHLPPPVGARAMNVATGASSSSASLRMCLPAPTVARGDVFGNRAST 243
           T AV AS++      H P P  + AM+  +   S+++ +   LP    A    FG+ A+T
Sbjct: 409 TPAVTASSSMSYTSGHSPSP-SSSAMSPQSRHGSTASVMYPTLPTSLPAVSQGFGHSATT 467

Query: 242 STGPS 228
           + GPS
Sbjct: 468 TLGPS 472

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>CCD16_BRARE (Q6P0I6) Coiled-coil domain-containing protein 16|
          Length = 326

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 464 PDSSRLPAPTPAHDTLAVGASAASFGLGMHLPPPVGARAMNVATGASS 321
           P  +  PA TPAH   A  +S+++       PP  G RA  + TGA +
Sbjct: 85  PAHTPAPAHTPAHTPAAASSSSSTLKRAAEPPPAPGKRA-KLQTGAGA 131

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>WAPL_DROME (Q9W517) Protein wings apart-like (Protein parallel sister|
           chromatids)
          Length = 1741

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
 Frame = -2

Query: 464 PDSSRLPAPTPAHDTLAVGASAA-------SFGLGMHLPPPVGARAMNVATGASSSSAS 309
           P + R PA   A  TLA  +S A       S G    LPPP  A + + +T +   SAS
Sbjct: 266 PKAGRQPAEVAATATLAAASSEAFISSTFGSPGSEPSLPPPTSAPSASASTSSQLPSAS 324

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>CTGE6_HUMAN (Q86UF2) Protein cTAGE-6 (cTAGE family member 6)|
          Length = 732

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = +2

Query: 2   PPTSPTGGSLTSAEKKGPARR---PLPPLKKTLQAGASREQLHWSGYWPAQHSSG 157
           PP +P  G L   + +GP  R   P PP       GASR      GY+P +   G
Sbjct: 651 PPLAPVRGPLFPVDTRGPFMRRGPPFPPPPPGTMFGASR------GYFPPRDFPG 699

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>RS11_METKA (Q8TVB9) 30S ribosomal protein S11P|
          Length = 137

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = +1

Query: 262 KTSPRATVGAGRHILRLALDEEAPVATFMARAPTGGGRCIPSPKLAAEAPTASVSCAGVG 441
           ++SP A + A R     A+++         RAP G G   P P   A+A   +++ AG+ 
Sbjct: 54  ESSPYAAMKAARRAAEEAMEKGITAVHVKVRAPGGHGPKTPGP--GAQAAIRALARAGLK 111

Query: 442 AGRRDE 459
            GR ++
Sbjct: 112 IGRIED 117

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>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2|
            (ALL1-related protein)
          Length = 5262

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = -2

Query: 341  VATGASSSSASLRMCLPAPTVARGDVFGNRASTSTGPSVPRRWHIVPRTVLQHAGRRPGR 162
            + +G+SS ++S+   L  P+V+ GD  G+      GP  P    ++ R +  + G +P +
Sbjct: 3844 LGSGSSSEASSVPHLLAQPSVSLGDQPGSMTQNLLGPQQP----MLERPMQNNTGPQPPK 3899

Query: 161  WSPM 150
              P+
Sbjct: 3900 PGPV 3903

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>EMBP_RAT (Q63189) Eosinophil granule major basic protein precursor (MBP)|
          Length = 227

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 179 QRAAARCVALCANGGAPRGRWRCSPYCRRRPHV 277
           +R   RCV LC  G    G WR S   +RRP +
Sbjct: 196 RRGGGRCVTLCTRG----GHWRRSGCGKRRPFI 224

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>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)|
          Length = 705

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 23/82 (28%), Positives = 34/82 (41%)
 Frame = -2

Query: 464 PDSSRLPAPTPAHDTLAVGASAASFGLGMHLPPPVGARAMNVATGASSSSASLRMCLPAP 285
           P   RLP+PT A    A  A+  + G G    P        VA G  +  A+     P+P
Sbjct: 503 PLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRP--------VAGGPGAPPAARPPASPSP 554

Query: 284 TVARGDVFGNRASTSTGPSVPR 219
               G     R ++ +GP+ P+
Sbjct: 555 QRQAGPPQATRQTSVSGPAPPK 576

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>MOAE_KLEAE (P54795) Protein moaE|
          Length = 257

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = -2

Query: 413 VGASAASFGLGMHLPP-PVGARAMNVATG-ASSSSASLRMCLPAPTVARGDVF--GNRAS 246
           + +SAA  G     PP P  A       G  +S+ AS+R CLP+    RG+V    + AS
Sbjct: 76  MSSSAAPAGWATAPPPRPATANEREALDGNLTSAFASVRACLPSLIARRGNVLFVASIAS 135

Query: 245 TSTGP 231
            + GP
Sbjct: 136 LAAGP 140

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>FPG_SYNY3 (P74290) Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)|
           (FAPY-DNA glycosylase) (DNA-(apurinic or apyrimidinic
           site) lyase mutM) (EC 4.2.99.18) (AP lyase mutM)
          Length = 286

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 399 GKLRAGDAPAPAGWCTRHER-GHRRLFVEREPQ 304
           G+LR+  AP PAGW   H R   + L+ ER+ Q
Sbjct: 63  GELRSNQAPGPAGWLGCHLRMTGQLLWTERDQQ 95

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>TOP1_MYCTU (P0A620) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
           (Omega-protein) (Relaxing enzyme) (Untwisting enzyme)
           (Swivelase)
          Length = 934

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 26  SLTSAEKKGPARRPLPP-LKKTLQAGASRE 112
           ++ SAE+K  ARRP PP +  TLQ  ASR+
Sbjct: 290 TVASAEEKPYARRPYPPFMTSTLQQEASRK 319

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>TOP1_MYCBO (P0A621) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
           (Omega-protein) (Relaxing enzyme) (Untwisting enzyme)
           (Swivelase)
          Length = 934

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 26  SLTSAEKKGPARRPLPP-LKKTLQAGASRE 112
           ++ SAE+K  ARRP PP +  TLQ  ASR+
Sbjct: 290 TVASAEEKPYARRPYPPFMTSTLQQEASRK 319

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>PHHY_PSEFL (P00438) P-hydroxybenzoate hydroxylase (EC 1.14.13.2)|
           (4-hydroxybenzoate 3-monooxygenase)
          Length = 394

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 389 GLGMHLPPPVGARAMNVATGASSSSASLRMCLPAPTVARGDV 264
           G   H+ PP GA+ +N+A  AS  S   R+ L A    RG++
Sbjct: 285 GDAAHIVPPTGAKGLNLA--ASDVSTLYRLLLKAYREGRGEL 324

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>PHHY_PSEAE (P20586) P-hydroxybenzoate hydroxylase (EC 1.14.13.2)|
           (4-hydroxybenzoate 3-monooxygenase) (PHBH)
          Length = 394

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 389 GLGMHLPPPVGARAMNVATGASSSSASLRMCLPAPTVARGDV 264
           G   H+ PP GA+ +N+A  AS  S   R+ L A    RG++
Sbjct: 285 GDAAHIVPPTGAKGLNLA--ASDVSTLYRLLLKAYREGRGEL 324

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>PACC_GIBMO (Q873X0) pH-response transcription factor pacC/RIM101|
          Length = 613

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 24/77 (31%), Positives = 38/77 (49%)
 Frame = -2

Query: 458 SSRLPAPTPAHDTLAVGASAASFGLGMHLPPPVGARAMNVATGASSSSASLRMCLPAPTV 279
           S+  PA TP        +S+ S+  G H P P  + AM+  +   S+++ +   LP    
Sbjct: 409 STGTPAVTPP-------SSSMSYTSG-HSPSP-SSSAMSPQSRHGSTASVMYPTLPTSLP 459

Query: 278 ARGDVFGNRASTSTGPS 228
           A    FG+ A+T+ GPS
Sbjct: 460 AVSQGFGHSATTTLGPS 476

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>TOP1_XYLFT (Q87AQ6) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
           (Omega-protein) (Relaxing enzyme) (Untwisting enzyme)
           (Swivelase)
          Length = 815

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +2

Query: 29  LTSAEKKGPARRPLPPLKKTLQAGASRE--QLHWSGYWPAQHSSGSIVQADGQR 184
           L++   + PA R +   ++ ++A  +RE   +H     PAQH S  +++ DG++
Sbjct: 166 LSAGRVQSPALRMIVEREEEIEAFITREYWSIHAECTHPAQHFSAKLIKLDGKK 219

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>RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein|
          Length = 2480

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 23/74 (31%), Positives = 32/74 (43%)
 Frame = +1

Query: 211  CQRRGTEGPVEVLALLPKTSPRATVGAGRHILRLALDEEAPVATFMARAPTGGGRCIPSP 390
            C   GTE P E  + L +T P A+       L   L E+ P AT M +  T        P
Sbjct: 1522 CPAEGTEEPTEPPSHLSETDPSASESQSGSQLEPGL-EKPPGATMMGQEHTQA-----QP 1575

Query: 391  KLAAEAPTASVSCA 432
               A   ++SV+C+
Sbjct: 1576 TQGAAERSSSVACS 1589

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>MPA5A_LOLPR (Q40240) Major pollen allergen Lol p 5a precursor (Lol p Va) (Lol p|
           Ib)
          Length = 308

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 12/101 (11%)
 Frame = +2

Query: 2   PPTSPTGGSLTSAEKKGPA---------RRPLPPLKKTLQAGASREQLHWSGYWPAQHSS 154
           P  +P GG     +++  A         R+P PPL   L+  +SR     S   P   S 
Sbjct: 41  PAATPAGGWREGDDRRAEAAGGRQRLASRQPWPPLPTPLRRTSSRSSRPPSPSPPRASSP 100

Query: 155 GSIVQADG---QRAAARCVALCANGGAPRGRWRCSPYCRRR 268
            S  +A G   +   A  VA  A    PRG+ R   +C  R
Sbjct: 101 TSAAKAPGLIPKLDTAYDVAYKAAEAHPRGQVRRLRHCPHR 141

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>K1PF_RHOCA (P23386) 1-phosphofructokinase (EC 2.7.1.56) (Fructose 1-phosphate|
           kinase)
          Length = 316

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
 Frame = +1

Query: 232 GPVEVLALLPKTSPRATVGAGR-------HILRLALD--EEAPVATFMARAPTG--GGRC 378
           G   VLA+ P T   +TVGAG        H   L LD  E A +AT  +    G  G   
Sbjct: 236 GAEAVLAIPPATPIASTVGAGDAMVAGLIHAATLGLDLAETARLATAFSLGALGEIGPHL 295

Query: 379 IPSPKLAAEAPTASV 423
            P  +LAA A T +V
Sbjct: 296 PPPERLAALARTVTV 310

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>PANB_RHOBA (Q7UM39) 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC|
           2.1.2.11) (Ketopantoate hydroxymethyltransferase)
          Length = 269

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 24/57 (42%), Positives = 27/57 (47%)
 Frame = +1

Query: 295 RHILRLALDEEAPVATFMARAPTGGGRCIPSPKLAAEAPTASVSCAGVGAGRRDESG 465
           R I RL  D +A  A   A A T    C+PS   AA      V   G+GAG RD SG
Sbjct: 163 RDIERLVADAKAAEA---AGAFTVLIECVPSEAAAAITDAVKVPTIGIGAG-RDVSG 215

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>EMBP_MOUSE (Q61878) Eosinophil granule major basic protein precursor (MBP)|
           (Proteoglycan 2, bone marrow)
          Length = 223

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 194 RCVALCANGGAPRGRWRCSPYCRRRPHV 277
           RCV LC  G    G WR S   +RRP +
Sbjct: 197 RCVTLCTQG----GHWRLSHCVKRRPFI 220

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>MUS81_RAT (Q4KM32) Crossover junction endonuclease MUS81 (EC 3.1.22.-)|
          Length = 551

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 5   PTSPTGGSLTSAEKKGPARRPLPPLKKTLQAGASREQLHWSGYWPAQHS 151
           P+SP+G    S       +    P+    QAG++      +GYWPAQ+S
Sbjct: 93  PSSPSGKKRASKGPPAQVQGSSMPVPTQPQAGSTN-----AGYWPAQNS 136

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>PROB_XANAC (Q8PK34) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)|
           (GK)
          Length = 363

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = +1

Query: 283 VGAGRHILRLALDEEAPVATFMARAPTGGGRCIPSPKLAAEAPTASV 423
           V AGR IL  A+D  AP+A   A A  G  + I   +   E P A V
Sbjct: 46  VAAGRAILPKAMDVGAPIAARQALAALGQAQLIALWQRFFERPVAQV 92

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>PACC_GIBFU (Q8J1U9) pH-response transcription factor pacC/RIM101|
          Length = 618

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 24/77 (31%), Positives = 38/77 (49%)
 Frame = -2

Query: 458 SSRLPAPTPAHDTLAVGASAASFGLGMHLPPPVGARAMNVATGASSSSASLRMCLPAPTV 279
           S+  PA TP        +S+ S+  G H P P  + AM+  +   S+++ +   LP    
Sbjct: 414 STGTPAVTPP-------SSSMSYTSG-HSPSP-SSSAMSPQSRHGSTASVMYPTLPTSLP 464

Query: 278 ARGDVFGNRASTSTGPS 228
           A    FG+ A+T+ GPS
Sbjct: 465 AVSQGFGHSATTTLGPS 481

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>HEM2_CHLRE (Q42682) Delta-aminolevulinic acid dehydratase, chloroplast|
           precursor (EC 4.2.1.24) (Porphobilinogen synthase)
           (ALADH)
          Length = 390

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 14  PTGGSLTSAEKKGPARRPLPPLKKTLQ 94
           P   +L SA K G A R +PP KKT Q
Sbjct: 259 PFRDALASAPKPGQAHRRIPPNKKTYQ 285

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>YMH7_CAEEL (P34474) Hypothetical protein F58A4.7 in chromosome III|
          Length = 431

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -2

Query: 371 PPPVGARAMNVATGASSSSASLRMCLPAPTVARGDVFGNRASTSTGPSVP 222
           PP + + A      AS    SLR  LP  T+    +  NR+ +   P  P
Sbjct: 52  PPSIMSAASAFDLTASGMQNSLRSVLPTSTIGHAPMLANRSLSQPAPLSP 101

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>SDK_CAEBR (Q60ZN5) Protein sidekick homolog precursor (Neuronal IgCAM protein|
            4)
          Length = 2322

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +2

Query: 8    TSPTGGSLTSAEKK-GPARR-PLPPLKKTLQAGASREQLHWSGYWPAQHSSGSIVQA 172
            TS   G L SA    GP++  PLPP K  + +G S   L W+    +    G ++QA
Sbjct: 1853 TSAGKGELRSANVTIGPSKDGPLPPSKPQITSGQSYVTLSWNDVANSDEIVGHLLQA 1909

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>PROB_XANOR (Q5GZF1) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)|
           (GK)
          Length = 362

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = +1

Query: 283 VGAGRHILRLALDEEAPVATFMARAPTGGGRCIPSPKLAAEAPTASV 423
           V AGR IL  A+D  AP+A   A A  G  + I   +   E P A V
Sbjct: 46  VAAGRAILPKAVDVGAPIAARQALAALGQAQLIALWQRFFERPVAQV 92

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>JDP_DROME (Q9TVP3) J domain-containing protein (dJDP)|
          Length = 195

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 23/85 (27%), Positives = 30/85 (35%)
 Frame = -2

Query: 374 LPPPVGARAMNVATGASSSSASLRMCLPAPTVARGDVFGNRASTSTGPSVPRRWHIVPRT 195
           LP   GA A    TGA  SS  L    P P         +R ++  G ++          
Sbjct: 129 LPETGGAAAQGPGTGAGCSSGGLTAASPNP--------AHRRASEGGAAL---------- 170

Query: 194 VLQHAGRRPGRWSPMNVGLANSHSN 120
              + G R G W   N  +AN   N
Sbjct: 171 ---YYGSRKGEWGGENTDVANKFRN 192

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>RB97D_DROME (Q02926) Ribonucleoprotein RB97D|
          Length = 471

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 464 PDSSRLPAPTPAHDTLAVGASAASFGLGMHLPPPVGARAMNVATGASSSSAS 309
           P+S   P P PA+     G +A        +PPP GA+A+ V+ G+ ++  S
Sbjct: 418 PNSYHTPQP-PAY----TGYNAGPLPPNGSVPPPTGAKAVGVSNGSVATGGS 464

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>MRP6_MOUSE (Q9R1S7) Multidrug resistance-associated protein 6 (ATP-binding|
           cassette sub-family C member 6)
          Length = 1498

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 425 DTLAVGASAASFGLGMHLPPPVGARAMNVATG 330
           D  A+G+  ASF  G+H   P+G + MN++ G
Sbjct: 725 DACALGSDVASFPAGVH--TPIGEQGMNLSGG 754

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>Y2247_MYCBO (P65822) Hypothetical protein Mb2247c precursor|
          Length = 520

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 234 PLGAPPLAHSATHRAAARWPSAWTMEPDECW 142
           PL APPLA +     A + P A  + P + W
Sbjct: 25  PLAAPPLAGATEEPGAGQTPGAPVVAPQQSW 55

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>Y2223_MYCTU (P65821) Hypothetical protein Rv2223c/MT2281 precursor|
          Length = 520

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 234 PLGAPPLAHSATHRAAARWPSAWTMEPDECW 142
           PL APPLA +     A + P A  + P + W
Sbjct: 25  PLAAPPLAGATEEPGAGQTPGAPVVAPQQSW 55


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,953,750
Number of Sequences: 219361
Number of extensions: 1711651
Number of successful extensions: 6360
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 5829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6348
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result