ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet39h04 |
|---|---|
| Clone Library Name | barley_pub |
>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 266 Score = 62.0 bits (149), Expect = 8e-10 Identities = 29/38 (76%), Positives = 31/38 (81%) Frame = +2 Query: 368 GKAVKDLPSSALFGEARVTMRKTAAKAKPVXXXXPWYG 481 GKAVK+LPSSAL G+ARV MRKTAAKAK V PWYG Sbjct: 15 GKAVKNLPSSALIGDARVNMRKTAAKAKQVSSSSPWYG 52
>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor| (LHCII type I CAB-C) (LHCP) Length = 267 Score = 50.8 bits (120), Expect = 2e-06 Identities = 25/39 (64%), Positives = 29/39 (74%), Gaps = 1/39 (2%) Frame = +2 Query: 368 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVXXXXPWYG 481 GKAVK PSS+ + G +VTMRKTA+KAKPV PWYG Sbjct: 15 GKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYG 53
>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor| (LHCII type I CAB-M9) (LHCP) Length = 265 Score = 50.4 bits (119), Expect = 2e-06 Identities = 29/39 (74%), Positives = 31/39 (79%), Gaps = 1/39 (2%) Frame = +2 Query: 368 GKAVKDLPSSALFGEARVTMRKTAAKAKPVXXX-XPWYG 481 GKAV ++PSS LFGEARVTMRKTAAKAKP PWYG Sbjct: 15 GKAV-NVPSS-LFGEARVTMRKTAAKAKPAASSGSPWYG 51
>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor| (LHCII type I CAB-16) (LHCP) Length = 266 Score = 50.1 bits (118), Expect = 3e-06 Identities = 25/39 (64%), Positives = 29/39 (74%), Gaps = 1/39 (2%) Frame = +2 Query: 368 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVXXXXPWYG 481 GKAVK PSS+ + G +VTMRKTA+KAKPV PWYG Sbjct: 14 GKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYG 52
>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor| (LHCII type I CAB-3C) (LHCP) Length = 267 Score = 49.7 bits (117), Expect = 4e-06 Identities = 25/39 (64%), Positives = 27/39 (69%), Gaps = 1/39 (2%) Frame = +2 Query: 368 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVXXXXPWYG 481 GKAVK PSS+ + G RVTMRKTA KAKP PWYG Sbjct: 15 GKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYG 53
>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 265 Score = 49.3 bits (116), Expect = 5e-06 Identities = 28/39 (71%), Positives = 31/39 (79%), Gaps = 1/39 (2%) Frame = +2 Query: 368 GKAVKDLPSSALFGEARVTMRKTAAKAKPVXXX-XPWYG 481 GKAV ++PSS+ FGEARVTMRKTAAKAKP PWYG Sbjct: 15 GKAV-NVPSSS-FGEARVTMRKTAAKAKPAAASGSPWYG 51
>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor| (LHCII type I CAB-E) (LHCP) Length = 266 Score = 48.9 bits (115), Expect = 7e-06 Identities = 25/39 (64%), Positives = 28/39 (71%), Gaps = 1/39 (2%) Frame = +2 Query: 368 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVXXXXPWYG 481 GKAVK PSS+ + G +VTMRKTA KAKPV PWYG Sbjct: 14 GKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYG 52
>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 265 Score = 48.1 bits (113), Expect = 1e-05 Identities = 23/31 (74%), Positives = 24/31 (77%), Gaps = 1/31 (3%) Frame = +2 Query: 392 SSALFGEARVTMRKTAAKAKPVXXX-XPWYG 481 SSALFGEAR+TMRKTAAK KP PWYG Sbjct: 21 SSALFGEARITMRKTAAKPKPAASSGSPWYG 51
>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor| (LHCII type I CAB-50) (LHCP) Length = 267 Score = 47.4 bits (111), Expect = 2e-05 Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 1/39 (2%) Frame = +2 Query: 368 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVXXXXPWYG 481 GKAVK PSS+ + G +VTMRKT KAKP+ PWYG Sbjct: 15 GKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYG 53
>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor| (LHCII type I CAB-91R) (LHCP) Length = 267 Score = 47.4 bits (111), Expect = 2e-05 Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 1/39 (2%) Frame = +2 Query: 368 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVXXXXPWYG 481 GKAVK PSS+ + G + TMRKT KAKPV PWYG Sbjct: 15 GKAVKFSPSSSEITGNGKATMRKTVTKAKPVSSGSPWYG 53
>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor| (LHCII type I CAB-40) (LHCP) Length = 267 Score = 47.4 bits (111), Expect = 2e-05 Identities = 24/39 (61%), Positives = 28/39 (71%), Gaps = 1/39 (2%) Frame = +2 Query: 368 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVXXXXPWYG 481 GKAVK PSS+ + G +VTMRKTA+KAK V PWYG Sbjct: 15 GKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYG 53
>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor| (LHCII type I CAB-22L) (LHCP) Length = 267 Score = 47.0 bits (110), Expect = 3e-05 Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 1/39 (2%) Frame = +2 Query: 368 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVXXXXPWYG 481 GK VK PSS+ + G + TMRKTA KAKPV PWYG Sbjct: 15 GKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYG 53
>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor| (LHCII type I CAB-25) (LHCP) Length = 266 Score = 45.8 bits (107), Expect = 6e-05 Identities = 21/38 (55%), Positives = 23/38 (60%) Frame = +2 Query: 368 GKAVKDLPSSALFGEARVTMRKTAAKAKPVXXXXPWYG 481 GKAV SS + G + TMRKT KAKPV PWYG Sbjct: 15 GKAVNVPSSSQITGNGKATMRKTVTKAKPVSSGSPWYG 52
>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 267 Score = 45.8 bits (107), Expect = 6e-05 Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 1/39 (2%) Frame = +2 Query: 368 GKAVKDLPS-SALFGEARVTMRKTAAKAKPVXXXXPWYG 481 GKAVK P+ S + GE R+TMRKTA K K V PWYG Sbjct: 15 GKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYG 53
>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor| (LHCII type I CAB-22R) (LHCP) Length = 267 Score = 45.1 bits (105), Expect = 1e-04 Identities = 22/39 (56%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +2 Query: 368 GKAVK-DLPSSALFGEARVTMRKTAAKAKPVXXXXPWYG 481 GKAVK SS + G +VTMRKT KAKP PWYG Sbjct: 15 GKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYG 53
>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor| (LHCII type I CAB-48) (LHCP) Length = 264 Score = 44.7 bits (104), Expect = 1e-04 Identities = 18/27 (66%), Positives = 20/27 (74%) Frame = +2 Query: 401 LFGEARVTMRKTAAKAKPVXXXXPWYG 481 +FGE R+TMRKTAAK KP PWYG Sbjct: 24 VFGEGRITMRKTAAKPKPARSGSPWYG 50
>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type I CAB-13) (LHCP) Length = 266 Score = 44.3 bits (103), Expect = 2e-04 Identities = 21/38 (55%), Positives = 23/38 (60%) Frame = +2 Query: 368 GKAVKDLPSSALFGEARVTMRKTAAKAKPVXXXXPWYG 481 GKAV SS + +VTMRKT KAKPV PWYG Sbjct: 15 GKAVNVPSSSEITRNGKVTMRKTVTKAKPVSSGSPWYG 52
>CB2F_LYCES (P14277) Chlorophyll a-b binding protein 3B, chloroplast precursor| (LHCII type I CAB-3B) (LHCP) (Fragments) Length = 267 Score = 43.9 bits (102), Expect = 2e-04 Identities = 22/37 (59%), Positives = 25/37 (67%), Gaps = 1/37 (2%) Frame = +2 Query: 368 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVXXXXPW 475 GKAVK PSS+ + G R+TMRKTAAK KP PW Sbjct: 15 GKAVKLSPSSSEISGNGRITMRKTAAKPKPASSGSPW 51
>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 261 Score = 43.9 bits (102), Expect = 2e-04 Identities = 17/30 (56%), Positives = 22/30 (73%) Frame = +2 Query: 392 SSALFGEARVTMRKTAAKAKPVXXXXPWYG 481 ++ +FGE R+TMRK+AAK KP PWYG Sbjct: 18 AAKVFGEGRITMRKSAAKPKPAASGSPWYG 47
>CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloroplast precursor| (LHCII type I CAB-3A) (LHCP) (Fragments) Length = 267 Score = 42.7 bits (99), Expect = 5e-04 Identities = 21/37 (56%), Positives = 24/37 (64%), Gaps = 1/37 (2%) Frame = +2 Query: 368 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVXXXXPW 475 GK VK PSS+ + G R+TMRKTAAK KP PW Sbjct: 15 GKTVKLAPSSSEITGNGRITMRKTAAKPKPASSGSPW 51
>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCII type I CAB-7) (LHCP) Length = 267 Score = 42.7 bits (99), Expect = 5e-04 Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +2 Query: 368 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVXXXXPWYG 481 G AVK PSS+ + G + MRKT KAKPV PWYG Sbjct: 15 GNAVKLSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYG 53
>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 264 Score = 39.7 bits (91), Expect = 0.004 Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 1/39 (2%) Frame = +2 Query: 368 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVXXXXPWYG 481 GKAVK+L SS+ + G+ARV+MRKTAA K PWYG Sbjct: 15 GKAVKNLSSSSEVQGDARVSMRKTAATKK---VGSPWYG 50
>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast| precursor (LHCII type I CAB-AB80) (LHCP) Length = 269 Score = 38.9 bits (89), Expect = 0.007 Identities = 19/38 (50%), Positives = 21/38 (55%) Frame = +2 Query: 368 GKAVKDLPSSALFGEARVTMRKTAAKAKPVXXXXPWYG 481 GK +K PSS G AR TMRK+A K PWYG Sbjct: 18 GKQLKLNPSSQELGAARFTMRKSATTKKVASSGSPWYG 55
>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor| (LHCII type I CAB-21) (LHCP) Length = 265 Score = 38.1 bits (87), Expect = 0.012 Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Frame = +2 Query: 368 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVXXXXPWYG 481 G+AVK PS+ + G RV+MRKT AK PV PWYG Sbjct: 15 GQAVKLSPSAPEITGNGRVSMRKTVAK--PVASSSPWYG 51
>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 262 Score = 38.1 bits (87), Expect = 0.012 Identities = 15/26 (57%), Positives = 16/26 (61%) Frame = +2 Query: 404 FGEARVTMRKTAAKAKPVXXXXPWYG 481 FGE R+TMRKT K K PWYG Sbjct: 23 FGEGRITMRKTVGKPKVAASGSPWYG 48
>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor| (Allergen Api g 3) Length = 264 Score = 38.1 bits (87), Expect = 0.012 Identities = 22/39 (56%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +2 Query: 368 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVXXXXPWYG 481 GKAVK PSS+ LFG RV+MRKT K PWYG Sbjct: 15 GKAVKVAPSSSELFGNGRVSMRKT---VKAPVSDSPWYG 50
>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (CAB-140) (LHCP) Length = 267 Score = 37.4 bits (85), Expect = 0.021 Identities = 22/39 (56%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +2 Query: 368 GKAVKDLPS-SALFGEARVTMRKTAAKAKPVXXXXPWYG 481 GKAVK P+ S + G RVTMRKT AK K PWYG Sbjct: 15 GKAVKLSPAASEVLGSGRVTMRKTVAKPKG-PSGSPWYG 52
>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor| (LHCII type I CAB-1B) (LHCP) Length = 265 Score = 37.0 bits (84), Expect = 0.027 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +2 Query: 368 GKAVKDLPS-SALFGEARVTMRKTAAKAKPVXXXXPWYG 481 G+AVK PS S + G R+TMRK AK+ P PWYG Sbjct: 15 GQAVKLSPSASEISGNGRITMRKAVAKSAP--SSSPWYG 51
>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 266 Score = 36.6 bits (83), Expect = 0.036 Identities = 21/39 (53%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +2 Query: 368 GKAVKDLP-SSALFGEARVTMRKTAAKAKPVXXXXPWYG 481 GKAVK P +S +FG RVTMRKT P PWYG Sbjct: 15 GKAVKLSPGASEVFGTGRVTMRKTVKPTGP--SGSPWYG 51
>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 256 Score = 36.6 bits (83), Expect = 0.036 Identities = 19/38 (50%), Positives = 23/38 (60%) Frame = +2 Query: 368 GKAVKDLPSSALFGEARVTMRKTAAKAKPVXXXXPWYG 481 G+A+K PS+ G RV+MRKTA K V PWYG Sbjct: 15 GQAMKLAPSTPELGVGRVSMRKTAPKT--VSSGSPWYG 50
>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast| precursor (LHCII type I CAB-165/180) Length = 267 Score = 35.4 bits (80), Expect = 0.080 Identities = 21/39 (53%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +2 Query: 368 GKAVKDLPS-SALFGEARVTMRKTAAKAKPVXXXXPWYG 481 GKAV P+ S + G RVTMRKT AK K PWYG Sbjct: 15 GKAVNLSPAASEVLGSGRVTMRKTVAKPKG-PSGSPWYG 52
>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCII type I CAB-8) Length = 268 Score = 35.0 bits (79), Expect = 0.10 Identities = 16/31 (51%), Positives = 17/31 (54%) Frame = +2 Query: 389 PSSALFGEARVTMRKTAAKAKPVXXXXPWYG 481 PSS G AR TMRK+A K PWYG Sbjct: 24 PSSQELGGARFTMRKSATTKKVASSGSPWYG 54
>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) (Fragment) Length = 255 Score = 34.3 bits (77), Expect = 0.18 Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%) Frame = +2 Query: 368 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVXXXXPWYG 481 G+AVK P++ + G A+ TMRKTA+K+ V PWYG Sbjct: 5 GQAVKLSPNAPEIQGNAKFTMRKTASKS--VSSGSPWYG 41
>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) (Fragment) Length = 245 Score = 33.1 bits (74), Expect = 0.40 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +2 Query: 389 PSSALFGEARVTMRKTAAKAKPVXXXXPWYG 481 PS+ G RV+MRKTA+K V PWYG Sbjct: 3 PSTPQLGVGRVSMRKTASKT--VSSGSPWYG 31
>RAI2_HUMAN (Q9Y5P3) Retinoic acid-induced protein 2| Length = 530 Score = 32.3 bits (72), Expect = 0.67 Identities = 20/65 (30%), Positives = 30/65 (46%) Frame = -2 Query: 203 EPLLGRISPFAPQPTGY*QPFPVVVPLPRAGSYALLTRSPLETPLPVRLACVKHAASVHP 24 +P +SP P P P+PV+VPLP P+ P+PV + +S P Sbjct: 215 QPFSSPLSPLVP-PATLLVPYPVIVPLP--------VPVPIPIPIPVPQSSESKFSSSFP 265 Query: 23 EPGSN 9 +P S+ Sbjct: 266 KPPSS 270
>CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloroplast precursor| (LHCII type I CAB-1C) (LHCP) (Fragments) Length = 265 Score = 32.0 bits (71), Expect = 0.88 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = +2 Query: 368 GKAVKDLPS-SALFGEARVTMRKTAAKAKPVXXXXPW 475 G+AVK PS S + G R+TMRK AK+ P PW Sbjct: 15 GQAVKLSPSASEISGNGRITMRKAVAKSAP--SSSPW 49
>HHEX_CHICK (Q05502) Homeobox protein PRH (Hematopoietically expressed| homeobox) Length = 277 Score = 31.6 bits (70), Expect = 1.2 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Frame = -2 Query: 203 EPLLGRISPFAPQPTGY*QPFPVVVPLPRAGSYALLT--RSPLETPLPVRLACVKHAASV 30 E +LGR AP P P P +P P + +L+ R+P+ P P+ A H A+ Sbjct: 38 EDILGRGPAAAPAPHSLPAPPPPTLPSPNSSFTSLVAPYRTPVYEPTPIHPAFSHHLAAT 97 Query: 29 H 27 + Sbjct: 98 Y 98
>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,| chloroplast precursor (Chlorophyll a-b binding protein type II 1B) (CAB) (LHCP) Length = 274 Score = 30.8 bits (68), Expect = 2.0 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +2 Query: 395 SALFGEARVTMRK-TAAKAKPVXXXXPWYG 481 + + GEARVTMRK T K PWYG Sbjct: 31 AGVHGEARVTMRKATTKKLTASASTSPWYG 60
>RAI2_MOUSE (Q9QVY8) Retinoic acid-induced protein 2 (3f8)| Length = 529 Score = 30.4 bits (67), Expect = 2.6 Identities = 19/65 (29%), Positives = 29/65 (44%) Frame = -2 Query: 203 EPLLGRISPFAPQPTGY*QPFPVVVPLPRAGSYALLTRSPLETPLPVRLACVKHAASVHP 24 +P +SP P P P+PV+VPLP P+ P+PV + + P Sbjct: 215 QPFNSPLSPLVP-PATLLVPYPVIVPLP--------VPVPIPIPVPVPQSTESKFSPTFP 265 Query: 23 EPGSN 9 +P S+ Sbjct: 266 KPPSS 270
>MOT8_MOUSE (O70324) Monocarboxylate transporter 8 (MCT 8) (X-linked| PEST-containing transporter) Length = 565 Score = 30.4 bits (67), Expect = 2.6 Identities = 19/56 (33%), Positives = 22/56 (39%) Frame = -2 Query: 185 ISPFAPQPTGY*QPFPVVVPLPRAGSYALLTRSPLETPLPVRLACVKHAASVHPEP 18 + P PQP QP P PLP G A PL P P+ + PEP Sbjct: 50 VPPPEPQPEPEPQPLPDPAPLPELGFEAEPEPQPLPDPAPLPELGFEAEPVQEPEP 105
>CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloroplast precursor| (LHCII type I CAB-1A) (LHCP) (Fragments) Length = 265 Score = 30.0 bits (66), Expect = 3.3 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = +2 Query: 368 GKAVKDLPS-SALFGEARVTMRKTAAKAKPVXXXXPW 475 G+AVK PS S G R+TMRK AK+ P PW Sbjct: 15 GQAVKLSPSASENSGNGRITMRKAVAKSAP--SSSPW 49
>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor| (LHCII type II CAB-1A) (LHCP) Length = 278 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%) Frame = +2 Query: 407 GEARVTMRK-TAAKAKPVXXXXPWYG 481 GEAR+TMRK T K+ PWYG Sbjct: 39 GEARLTMRKATGRKSVAASIDSPWYG 64
>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,| chloroplast precursor (Chlorophyll a-b binding protein type II 1A) (CAB) (LHCP) Length = 278 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%) Frame = +2 Query: 407 GEARVTMRK-TAAKAKPVXXXXPWYG 481 GEAR+TMRK T K+ PWYG Sbjct: 39 GEARLTMRKATGKKSVAASIDSPWYG 64
>Y433_MYCPN (P75355) Hypothetical ABC transporter ATP-binding protein MG304| homolog (A05_orf270L) Length = 270 Score = 29.6 bits (65), Expect = 4.4 Identities = 13/46 (28%), Positives = 27/46 (58%) Frame = -3 Query: 139 QLLFPSQGQVLTRYSPVRHWKHHFPFDLHVLSMPPAFILSQDQTLH 2 +++F S+GQ+L ++SP +K F H ++P ++L+ + H Sbjct: 201 EIIFLSKGQLLKQFSPAAIYKQLHLFHQHHFTLPFPWLLAHEVADH 246
>MANB_CALSA (P22533) Beta-mannanase/endoglucanase A precursor [Includes: Mannan| endo-1,4-beta-mannosidase A (EC 3.2.1.78) (Beta-mannanase) (Endo-1,4-mannanase); Endo-1,4-beta-glucanase (EC 3.2.1.4) (Cellulase)] Length = 1331 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/36 (38%), Positives = 16/36 (44%) Frame = -2 Query: 173 APQPTGY*QPFPVVVPLPRAGSYALLTRSPLETPLP 66 AP PT P P V P P +T +P TP P Sbjct: 521 APAPTATPTPTPTVTPTPTVTPTPTVTATPTPTPTP 556 Score = 28.9 bits (63), Expect = 7.5 Identities = 16/51 (31%), Positives = 21/51 (41%) Frame = -2 Query: 170 PQPTGY*QPFPVVVPLPRAGSYALLTRSPLETPLPVRLACVKHAASVHPEP 18 P PT P P V P P +T +P TP P+ V ++ P P Sbjct: 737 PTPTPTPTPTPTVTPTPTVTPTPTVTATPTPTPTPI--PTVTPLPTISPSP 785
>NU5M_CHICK (P18940) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 605 Score = 29.3 bits (64), Expect = 5.7 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = -1 Query: 156 VLATVSSCCSPPKGRFLRV-THPFATGNTTSRSTCMC 49 V A + S G FL + THPF + N T+ +TC+C Sbjct: 243 VSALLHSSTMVVAGIFLLIRTHPFLSSNKTALTTCLC 279
>GRN_HUMAN (P28799) Granulins precursor (Proepithelin) (PEPI) [Contains:| Acrogranin; Paragranulin; Granulin-1 (Granulin G); Granulin-2 (Granulin F); Granulin-3 (Granulin B); Granulin-4 (Granulin A); Granulin-5 (Granulin C); Granulin-6 (Granulin D); Granul Length = 593 Score = 29.3 bits (64), Expect = 5.7 Identities = 20/58 (34%), Positives = 24/58 (41%) Frame = -1 Query: 255 GYHRLGKLLPHQLANQTRAPPWADFSFCSSAYGVLATVSSCCSPPKGRFLRVTHPFAT 82 G H L K LP Q N RA + C A S+CC P G++ P AT Sbjct: 183 GTHPLAKKLPAQRTN--RAVALSSSVMCPDARSRCPDGSTCCELPSGKYGCCPMPNAT 238
>NOTC3_HUMAN (Q9UM47) Neurogenic locus notch homolog protein 3 precursor (Notch 3)| [Contains: Notch 3 extracellular truncation; Notch 3 intracellular domain] Length = 2321 Score = 28.9 bits (63), Expect = 7.5 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Frame = -1 Query: 210 QTRAPPWADFSFCSSAYGVLATVSSCCSPPKGRFLRV--THPFATGNTTS 67 Q R PP+ Y V SS PPK RFLRV HP+ T + S Sbjct: 2205 QERPPPYLAVPGHGEEYPVAGAHSS---PPKARFLRVPSEHPYLTPSPES 2251
>GDA6_WHEAT (P04726) Alpha/beta-gliadin clone PW1215 precursor (Prolamin)| Length = 296 Score = 28.5 bits (62), Expect = 9.7 Identities = 20/71 (28%), Positives = 29/71 (40%) Frame = -2 Query: 215 LIRREPLLGRISPFAPQPTGY*QPFPVVVPLPRAGSYALLTRSPLETPLPVRLACVKHAA 36 L++++ G+ F PQ QP+P P P Y L P P P +L Sbjct: 44 LVQQQQFPGQQQQFPPQ-----QPYPQPQPFPSQQPYLQLQPFPQPQPFPPQLP------ 92 Query: 35 SVHPEPGSNSP 3 +P+P SP Sbjct: 93 --YPQPPPFSP 101
>GDA5_WHEAT (P04725) Alpha/beta-gliadin A-V precursor (Prolamin)| Length = 319 Score = 28.5 bits (62), Expect = 9.7 Identities = 20/71 (28%), Positives = 29/71 (40%) Frame = -2 Query: 215 LIRREPLLGRISPFAPQPTGY*QPFPVVVPLPRAGSYALLTRSPLETPLPVRLACVKHAA 36 L++++ G+ F PQ QP+P P P Y L P P P +L Sbjct: 44 LVQQQQFPGQQQQFPPQ-----QPYPQPQPFPSQQPYLQLQPFPQPQPFPPQLP------ 92 Query: 35 SVHPEPGSNSP 3 +P+P S P Sbjct: 93 --YPQPQSFPP 101
>ENT1_SCHPO (O74423) Epsin-1| Length = 706 Score = 28.5 bits (62), Expect = 9.7 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Frame = -2 Query: 188 RISPFAPQPTGY*QPF----PVVVPLPRAGSYALLTRSPLETPLPVRLACVKHAASVHPE 21 R PQ TG+ QPF P V P+ + +P+ P H VHP+ Sbjct: 465 RTGMMQPQRTGFSQPFESNNPFPVMQPQRTGFGQTPNAPMMAP--------NHTGYVHPQ 516 Query: 20 P 18 P Sbjct: 517 P 517
>PLXB1_MOUSE (Q8CJH3) Plexin-B1 precursor| Length = 2119 Score = 28.5 bits (62), Expect = 9.7 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 7/83 (8%) Frame = -2 Query: 311 SCVSGVRAR*QWGCGG-VWRDIIALVSYCLTN*LI--RREPLLGRISPFAPQPTGY*QPF 141 +CVS +WGC VW+ + + C ++ ++ PLL I P + T PF Sbjct: 643 ACVSS-----RWGCNWCVWQQLCTHKASCDAGPMVASQQSPLLPLIPPARDELT----PF 693 Query: 140 PVVVP----LPRAGSYALLTRSP 84 P VP P S+ + R+P Sbjct: 694 PPTVPQTTVTPTPNSFPIEPRAP 716
>HMW1_MYCPN (Q50365) Cytadherence high molecular weight protein 1 (Cytadherence| accessory protein 1) Length = 1018 Score = 28.5 bits (62), Expect = 9.7 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Frame = -2 Query: 212 IRREPLLGRISPFAPQPTGY*QPFPVVVPLPRAGSYALLTR-SPLETP--LPVRLACVKH 42 ++ EP++ + +PT +P P P P + L +P+E P +PV + + Sbjct: 450 VQPEPVVETVQEAVAEPTQVVEPQPQAAPQPAVYEWNLTPEAAPVEQPEVIPVTVVESQA 509 Query: 41 AASVHPEP 18 A+ P+P Sbjct: 510 TATAEPQP 517 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,002,385 Number of Sequences: 219361 Number of extensions: 1314266 Number of successful extensions: 3904 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 3428 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3858 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
