ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet39f04 |
|---|---|
| Clone Library Name | barley_pub |
>ELI5_HORVU (P14895) High molecular mass early light-inducible protein HV58,| chloroplast precursor (ELIP) Length = 231 Score = 104 bits (260), Expect = 8e-23 Identities = 69/147 (46%), Positives = 69/147 (46%), Gaps = 37/147 (25%) Frame = +1 Query: 100 MATMVALSSFAVVGXXXXXXXXXXXXXXTLVVRAQTE----------------------- 210 MATMVALSSFAVVG TLVVRAQTE Sbjct: 1 MATMVALSSFAVVGRSAARSPVVAPRRRTLVVRAQTEVSLHVARTITVSVFGCLPASTIT 60 Query: 211 --------------PDMDSAKEXXXXXXXXXXXXXXXXXXXXXXXXXXXVTKKANPSVWD 348 PDMDSAKE VTKKANPSVWD Sbjct: 61 SRLDLTVNLFVYVQPDMDSAKETTSASTSPSPSQYTSPSPTTIPAAPKPVTKKANPSVWD 120 Query: 349 ALAFSGPAPERINGRLAMVGFVAALSV 429 ALAFSGPAPERINGRLAMVGFVAALSV Sbjct: 121 ALAFSGPAPERINGRLAMVGFVAALSV 147
>ELI6_HORVU (P14896) Low molecular mass early light-inducible protein HV60,| chloroplast precursor (ELIP) Length = 167 Score = 68.6 bits (166), Expect = 6e-12 Identities = 49/113 (43%), Positives = 57/113 (50%), Gaps = 3/113 (2%) Frame = +1 Query: 100 MATMVALSSFA--VVGXXXXXXXXXXXXXXTLVVRAQTE-PDMDSAKEXXXXXXXXXXXX 270 MATM+A+SSFA V TLVVRAQTE P+ + Sbjct: 1 MATMMAMSSFAGAAVLPRGSARSLPALGRRTLVVRAQTEGPNAPPPNK------------ 48 Query: 271 XXXXXXXXXXXXXXXVTKKANPSVWDALAFSGPAPERINGRLAMVGFVAALSV 429 KA+ S+WDA+AFSGPAPERINGRLAMVGFV AL+V Sbjct: 49 -----------------PKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAV 84
>ELI9_HORVU (P14897) Low molecular mass early light-inducible protein HV90,| chloroplast precursor (ELIP) Length = 172 Score = 62.0 bits (149), Expect = 6e-10 Identities = 28/35 (80%), Positives = 32/35 (91%) Frame = +1 Query: 325 KANPSVWDALAFSGPAPERINGRLAMVGFVAALSV 429 KA+ S+WD +AFSGPAPERINGRLAMVGFV AL+V Sbjct: 55 KASTSIWDEMAFSGPAPERINGRLAMVGFVTALAV 89
>ELI_PEA (P11432) Early light-induced protein, chloroplast precursor (ELIP)| Length = 196 Score = 51.6 bits (122), Expect = 8e-07 Identities = 23/28 (82%), Positives = 26/28 (92%) Frame = +1 Query: 346 DALAFSGPAPERINGRLAMVGFVAALSV 429 D +AFSGPAPERINGRLAM+GFVAA+ V Sbjct: 89 DLMAFSGPAPERINGRLAMIGFVAAMGV 116
>DS22_CRAPL (Q01931) Desiccation stress protein DSP-22, chloroplast precursor| Length = 199 Score = 41.6 bits (96), Expect = 8e-04 Identities = 19/28 (67%), Positives = 22/28 (78%) Frame = +1 Query: 346 DALAFSGPAPERINGRLAMVGFVAALSV 429 D +F G APERINGR AM+GFVAA+ V Sbjct: 90 DLFSFDGLAPERINGRSAMIGFVAAVGV 117
>CBR_DUNBA (P27516) Carotene biosynthesis-related protein CBR, chloroplast| precursor Length = 172 Score = 41.6 bits (96), Expect = 8e-04 Identities = 22/32 (68%), Positives = 26/32 (81%) Frame = +1 Query: 328 ANPSVWDALAFSGPAPERINGRLAMVGFVAAL 423 A P+V + + FSG APE INGRLAM+GFVAAL Sbjct: 63 AAPTVTEVMGFSG-APEIINGRLAMLGFVAAL 93
>NUOG_MYCTU (P95175) NADH-quinone oxidoreductase chain G (EC 1.6.99.5) (NADH| dehydrogenase I, chain G) (NDH-1, chain G) Length = 806 Score = 32.3 bits (72), Expect = 0.49 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Frame = -2 Query: 416 ATKPTMASRPLMRSGAGPLNA--SASQTEGLAFLVTGLGAA----GIVVGDGLVYWE 264 AT+P + + PL+R G P A S + +A GL AA G++VG G V WE Sbjct: 285 ATQPDVITTPLIRDGGDPKGALVPTSWSHAMAVAAQGLAAARGRTGVLVG-GRVTWE 340
>NUOG_MYCBO (P59962) NADH-quinone oxidoreductase chain G (EC 1.6.99.5) (NADH| dehydrogenase I, chain G) (NDH-1, chain G) Length = 806 Score = 32.3 bits (72), Expect = 0.49 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Frame = -2 Query: 416 ATKPTMASRPLMRSGAGPLNA--SASQTEGLAFLVTGLGAA----GIVVGDGLVYWE 264 AT+P + + PL+R G P A S + +A GL AA G++VG G V WE Sbjct: 285 ATQPDVITTPLIRDGGDPKGALVPTSWSHAMAVAAQGLAAARGRTGVLVG-GRVTWE 340
>SECA1_MYCTU (P0A5Y8) Preprotein translocase secA 1 subunit| Length = 949 Score = 28.9 bits (63), Expect = 5.4 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = +3 Query: 345 GRARVQRPGAGAHQRPAG 398 G A+VQR G GAH+ PAG Sbjct: 902 GSAQVQRNGGGAHKTPAG 919
>SECA1_MYCBO (P0A5Y9) Preprotein translocase secA 1 subunit| Length = 949 Score = 28.9 bits (63), Expect = 5.4 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = +3 Query: 345 GRARVQRPGAGAHQRPAG 398 G A+VQR G GAH+ PAG Sbjct: 902 GSAQVQRNGGGAHKTPAG 919
>NOEK_RHISN (P55356) Phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 474 Score = 28.1 bits (61), Expect = 9.2 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 12/83 (14%) Frame = -2 Query: 425 DSAATKPTMASRPLMRSGAGPLNASASQTEGLAFLVTGLGAAGIVV--------GDGLVY 270 DS++ + L R+G P++ T LA LGAA +++ +G+ + Sbjct: 53 DSSSEIAAICMAALARAGMVPVDCGGLPTPALALYGRKLGAASLMITGSHIPADRNGIKF 112 Query: 269 WEGEGEV----DALVVSLAESMS 213 + +GE+ + + +LAE +S Sbjct: 113 YLPDGEINKADEQAITALAEQLS 135
>YCF17_CYAPA (P48367) Hypothetical 5.5 kDa protein ycf17| Length = 49 Score = 28.1 bits (61), Expect = 9.2 Identities = 15/29 (51%), Positives = 20/29 (68%) Frame = +1 Query: 337 SVWDALAFSGPAPERINGRLAMVGFVAAL 423 ++W+ SG E NGRLAM+GF+AAL Sbjct: 6 NIWNWGFTSGA--ENWNGRLAMLGFIAAL 32 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,595,517 Number of Sequences: 219361 Number of extensions: 603553 Number of successful extensions: 2282 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2205 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2280 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
