>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional|
           activator IE175) (Alpha-4 protein)
          Length = 1298

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 24/55 (43%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = +3

Query: 192 AADGSGHGVP-----RRAQLRGSAPAERQRQEPRLRLPYATDFLRRPVRHGRGRP 341
           AAD +G   P     R A LRG+ P    R  PR   P A    RR  RHGR RP
Sbjct: 126 AADAAGDRAPARGREREAPLRGAYPDPTDRLSPR---PPAQPPRRR--RHGRWRP 175

>TAF1_DROME (P51123) Transcription initiation factor TFIID subunit 1 (EC|
            2.7.11.1) (Transcription initiation factor TFIID 230 kDa
            subunit) (TAFII-230) (TAFII250) (TBP-associated factor
            230 kDa) (p230)
          Length = 2129

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +3

Query: 162  SSDHDGRGRWAADGSGHGVP--RRAQLRGSAPAERQRQEPRL-RLPYATDFLRRPVRHGR 332
            SS+   R   A  GS H  P  R+    G    +R R  PR  R P      + PV+ GR
Sbjct: 1757 SSNSIHRSMGAEAGSSHTAPAVRKPAPPGPGEVKRGRGRPRKQRDPVEEVKSQNPVKRGR 1816

Query: 333  GRP 341
            GRP
Sbjct: 1817 GRP 1819

>DBP7_EMENI (Q5BGX6) ATP-dependent RNA helicase dbp7 (EC 3.6.1.-)|
          Length = 778

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 174 DGRGRWAADGSGHGVPRRAQLRGSAPAERQRQE 272
           DG G    + SG   P R Q+ GS PA+RQ+ +
Sbjct: 50  DGDGNKDGNESGPRNPNRIQVSGSRPAKRQKTD 82

>KCTD2_MOUSE (Q8CEZ0) Potassium channel tetramerisation domain-containing|
           protein 2
          Length = 266

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 19/56 (33%), Positives = 21/56 (37%)
 Frame = +3

Query: 186 RWAADGSGHGVPRRAQLRGSAPAERQRQEPRLRLPYATDFLRRPVRHGRGRPCGPA 353
           RWA   +    P    LRG  PA+     P  R   A           RGRP GPA
Sbjct: 20  RWATAAARAADPPALALRGRHPADTAASPPPPRTAGARARTSGADGRRRGRPLGPA 75

>CJ006_MOUSE (Q6P9P0) Protein C10orf6 homolog|
          Length = 1278

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 17/75 (22%), Positives = 31/75 (41%)
 Frame = +3

Query: 123 VEQVEFILKEKSCSSDHDGRGRWAADGSGHGVPRRAQLRGSAPAERQRQEPRLRLPYATD 302
           V ++E I KE    +D        ++   H      Q+  ++  E + Q+P L LP    
Sbjct: 500 VLRLEDIAKEPEDETDRSSADSAPSNAGHHSSRNSDQVHSASTKETKIQKPHLPLPQEKS 559

Query: 303 FLRRPVRHGRGRPCG 347
            ++R     + +P G
Sbjct: 560 TIKRASNLQKNKPAG 574

>Y004_MYCTU (P71573) UPF0232 protein Rv0004/MT0004|
          Length = 187

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 21/71 (29%), Positives = 29/71 (40%)
 Frame = +3

Query: 57  KPDKN*KWEGDRRS*TPQLQVVVEQVEFILKEKSCSSDHDGRGRWAADGSGHGVPRRAQL 236
           +PD+N    G+R   +P L +V   ++             GRGR A+  SG    RR   
Sbjct: 7   RPDQN---RGERSMKSPGLDLVRRTLDEARAAARARGQDAGRGRVASVASGRVAGRRRSW 63

Query: 237 RGSAPAERQRQ 269
            G  P  R  Q
Sbjct: 64  SGPGPDIRDPQ 74


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,517,980
Number of Sequences: 219361
Number of extensions: 850193
Number of successful extensions: 2514
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2514
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)