Clone Information

BLAST Search Result

Clone Name	baet39d06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ZN759_MOUSE (Q80VM4) Zinc finger protein 579	32	0.37
2	SSB2_ECOLI (P28043) Plasmid-derived single-stranded DNA-binding ...	31	0.63
3	CCNT1_PANTR (Q8HXN7) Cyclin-T1 (Cyclin-T) (CycT1)	31	0.63
4	EP400_MOUSE (Q8CHI8) E1A-binding protein p400 (EC 3.6.1.-) (p400...	31	0.63
5	IF2_SYNP6 (Q5N0A5) Translation initiation factor IF-2	31	0.82
6	CCNT1_HUMAN (O60563) Cyclin-T1 (Cyclin-T) (CycT1)	31	0.82
7	RYR1_HUMAN (P21817) Ryanodine receptor 1 (Skeletal muscle-type r...	30	1.1
8	TLE2_BRARE (O13166) Groucho 2 protein	30	1.1
9	TAU_MACMU (P57786) Microtubule-associated protein tau (Neurofibr...	30	1.1
10	DRD5_RAT (P25115) D(1B) dopamine receptor (D(5) dopamine receptor)	30	1.8
11	CMLR_STRLI (P31141) Chloramphenicol resistance protein	30	1.8
12	TAU_PANTR (Q5YCW1) Microtubule-associated protein tau	30	1.8
13	TAU_GORGO (Q5YCW0) Microtubule-associated protein tau	30	1.8
14	LOXL4_BOVIN (Q8MJ24) Lysyl oxidase homolog 4 precursor (EC 1.4.3...	29	2.4
15	MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia p...	29	2.4
16	IF2_PELCD (Q3A4A7) Translation initiation factor IF-2	29	2.4
17	PKHA6_MOUSE (Q7TQG1) Pleckstrin homology domain-containing famil...	29	3.1
18	ACVS_NOCLA (P27743) N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D...	29	3.1
19	BRE1B_MACFA (Q4R7K7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-)...	29	3.1
20	AQPM_METTM (Q9C4Z5) Aquaporin aqpM	29	3.1
21	IF2_CORGL (Q8NP40) Translation initiation factor IF-2	28	4.1
22	LOXL4_HUMAN (Q96JB6) Lysyl oxidase homolog 4 precursor (EC 1.4.3...	28	4.1
23	PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presy...	28	5.3
24	LAC1_BOTCI (Q12570) Laccase (EC 1.10.3.2) (Benzenediol:oxygen ox...	28	5.3
25	AMEL_MONDO (Q28462) Amelogenin	28	5.3
26	IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2	28	5.3
27	BUD3_ASHGO (Q9HF61) Bud site selection protein BUD3	28	5.3
28	DUFFY_PANTR (Q95LF3) Duffy antigen/chemokine receptor (CD234 ant...	28	5.3
29	TAU_HYLLA (Q5YCV9) Microtubule-associated protein tau	28	5.3
30	GLGB_SYNEL (Q8DLB8) 1,4-alpha-glucan branching enzyme (EC 2.4.1....	28	7.0
31	RYR1_PIG (P16960) Ryanodine receptor 1 (Skeletal muscle-type rya...	28	7.0
32	BLI1_CAEEL (Q09457) Cuticle collagen bli-1 (Blistered cuticle pr...	28	7.0
33	Y705_DEIRA (Q9RWG3) Hypothetical protein DR0705	28	7.0
34	RYR1_RABIT (P11716) Ryanodine receptor 1 (Skeletal muscle-type r...	28	7.0
35	APA_MYCTU (Q50906) Alanine and proline-rich secreted protein apa...	28	7.0
36	APA_MYCBO (O30620) Alanine and proline-rich secreted protein apa...	28	7.0
37	BRE1B_HUMAN (O75150) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-)...	28	7.0
38	SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains prote...	27	9.1
39	K0574_HUMAN (O60320) Protein KIAA0574 (Fragment)	27	9.1
40	Y7333_BRAJA (Q89DV4) UPF0182 protein bll7333	27	9.1
41	CMLA_PSEAE (P32482) Chloramphenicol resistance protein	27	9.1
42	CCMF_ECOLI (P33927) Cytochrome c-type biogenesis protein ccmF	27	9.1
43	Y5204_STRCO (Q9FCI4) UPF0182 protein SCO5204	27	9.1
44	RCOR3_MOUSE (Q6PGA0) REST corepressor 3	27	9.1
45	RCOR3_HUMAN (Q9P2K3) REST corepressor 3	27	9.1
46	GLGB_SALTY (Q8ZLG5) 1,4-alpha-glucan branching enzyme (EC 2.4.1....	27	9.1
47	GLGB_SALTI (Q8Z235) 1,4-alpha-glucan branching enzyme (EC 2.4.1....	27	9.1
48	GLGB_SALPA (Q5PM06) 1,4-alpha-glucan branching enzyme (EC 2.4.1....	27	9.1

>ZN759_MOUSE (Q80VM4) Zinc finger protein 579|
          Length = 562

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 75  ANTQPAIANQKIATQPSQKRRPPH--HGDRGGLVAPLPGVKVRAPEPALKPQN 227
           A  + A A Q++ TQ SQ  +PP     +  GL  P+  +K   P P   PQ+
Sbjct: 468 AELERAAALQELQTQASQSPQPPQPLKQEAEGLPLPIAHIKEEPPSPGTPPQS 520

to top

>SSB2_ECOLI (P28043) Plasmid-derived single-stranded DNA-binding protein (SSB)|
           (Helix-destabilizing protein)
          Length = 178

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 21/62 (33%), Positives = 28/62 (45%)
 Frame = +3

Query: 36  TRTTVLWLPGTAAANTQPAIANQKIATQPSQKRRPPHHGDRGGLVAPLPGVKVRAPEPAL 215
           T  T+  L   A A TQP    Q+ + QP  + +      +GG      G KV  PEP L
Sbjct: 104 TTGTMQMLGRAAGAQTQPE-EGQQFSAQPQPEPQSEAGTKKGGAKTKGRGRKVAQPEPQL 162

Query: 216 KP 221
           +P
Sbjct: 163 QP 164

to top

>CCNT1_PANTR (Q8HXN7) Cyclin-T1 (Cyclin-T) (CycT1)|
          Length = 725

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 18/71 (25%), Positives = 28/71 (39%)
 Frame = +3

Query: 3   AASGENSPYPHTRTTVLWLPGTAAANTQPAIANQKIATQPSQKRRPPHHGDRGGLVAPLP 182
           +++ +  P   T   V   P   A +T+ +  N    + P+  + P H  D  GL    P
Sbjct: 568 SSTRKRGPSEETGGAVFDHPAKIAKSTKSSSLNFSFPSLPTMAQMPGHSSDTSGLSFSQP 627

Query: 183 GVKVRAPEPAL 215
             K R P   L
Sbjct: 628 SCKTRVPHSKL 638

to top

>EP400_MOUSE (Q8CHI8) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa|
           SWI2/SNF2-related protein) (Domino homolog) (mDomino)
          Length = 3072

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 19/73 (26%), Positives = 27/73 (36%)
 Frame = +3

Query: 3   AASGENSPYPHTRTTVLWLPGTAAANTQPAIANQKIATQPSQKRRPPHHGDRGGLVAPLP 182
           A S +  P+ H   T   + G  +A        Q++     Q +RP       G+V   P
Sbjct: 473 AFSSQQQPFQHQSLTGSLVVGPGSATEADPFKRQQVMPPTEQSKRPRLEVGHPGVVFQHP 532

Query: 183 GVKVRAPEPALKP 221
           GV    P   L P
Sbjct: 533 GVNAGVPLQQLMP 545

to top

>IF2_SYNP6 (Q5N0A5) Translation initiation factor IF-2|
          Length = 1030

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = +3

Query: 60  PGTAAANTQPAIANQKIATQPSQKRRPPHHGDRGGLVAPLPGVKVRAPEPALKPQN---R 230
           P   A   +PA AN+  A  P +  RP    ++  +V P P     + EPA  P      
Sbjct: 111 PNIVAPPRRPAAANEP-AKAPIKPARPEKSAEKPEIVTPRPPAPAASAEPAKSPSRPAPA 169

Query: 231 TT*RPV 248
            T RPV
Sbjct: 170 ATPRPV 175

to top

>CCNT1_HUMAN (O60563) Cyclin-T1 (Cyclin-T) (CycT1)|
          Length = 726

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 18/71 (25%), Positives = 28/71 (39%)
 Frame = +3

Query: 3   AASGENSPYPHTRTTVLWLPGTAAANTQPAIANQKIATQPSQKRRPPHHGDRGGLVAPLP 182
           +++ +  P   T   V   P   A +T+ +  N    + P+  + P H  D  GL    P
Sbjct: 569 SSTRKRGPSEETGGAVFDHPAKIAKSTKSSSLNFSFPSLPTMGQMPGHSSDTSGLSFSQP 628

Query: 183 GVKVRAPEPAL 215
             K R P   L
Sbjct: 629 SCKTRVPHSKL 639

to top

>RYR1_HUMAN (P21817) Ryanodine receptor 1 (Skeletal muscle-type ryanodine|
            receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release
            channel)
          Length = 5038

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 20/64 (31%), Positives = 23/64 (35%)
 Frame = +3

Query: 30   PHTRTTVLWLPGTAAANTQPAIANQKIATQPSQKRRPPHHGDRGGLVAPLPGVKVRAPEP 209
            P TR   L+ PG +  N  P      +    S   RPPHH      VA LP         
Sbjct: 1739 PETRAITLFPPGRSTENGHPRHGLPGVGVTTSL--RPPHHFSPPCFVAALPAAGAAEAPA 1796

Query: 210  ALKP 221
             L P
Sbjct: 1797 RLSP 1800

to top

>TLE2_BRARE (O13166) Groucho 2 protein|
          Length = 761

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 120 PSQKRRPPHHGDRGGLVAPLPGVKVRAPEP 209
           PS K +PP H D+    +  PG+K +AP P
Sbjct: 303 PSSKTKPPEHNDK----SSTPGLKSKAPTP 328

to top

>TAU_MACMU (P57786) Microtubule-associated protein tau (Neurofibrillary tangle|
           protein) (Paired helical filament-tau) (PHF-tau)
          Length = 458

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 14/65 (21%)
 Frame = +3

Query: 72  AANTQPAIANQKIATQP------SQKRRPPHHGDRGGLVAP----LPGVKVRAPE----P 209
           A  T P+ A +++  +P      S++  PP  GDR G  +P     PG + R P     P
Sbjct: 177 APKTPPSSATKQVQRKPPPAEPTSERGEPPKSGDRSGYSSPGSPGTPGSRSRTPSLPTPP 236

Query: 210 ALKPQ 224
           A +P+
Sbjct: 237 AREPK 241

to top

>DRD5_RAT (P25115) D(1B) dopamine receptor (D(5) dopamine receptor)|
          Length = 475

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 25/76 (32%), Positives = 36/76 (47%)
 Frame = -2

Query: 254 GRNRTLRGAVLGLERRLWSANFDAGERSDEAAAVAMVWWPPFLAWLGSDLLVRNGWLCIC 75
           GRNRT + A LGL+R+L  A  DA   S      A V     L  L    L+ N  +C  
Sbjct: 5   GRNRTAQPARLGLQRQL--AQVDAPAGSATPLGPAQVVTAGLLTLLIVWTLLGNVLVCAA 62

Query: 74  RCRAREPQDRRASVWI 27
             R+R  + +  +++I
Sbjct: 63  IVRSRHLRAKMTNIFI 78

to top

>CMLR_STRLI (P31141) Chloramphenicol resistance protein|
          Length = 392

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
 Frame = -3

Query: 127 WLGWVAIFWFAMAGCVFAA-----AVPGSHKTVVRVCG*GLFSPLAA 2
           WLGW A FW     C+ AA     A+P    T     G  L   LAA
Sbjct: 153 WLGWRATFWAVAVCCLPAAFGVLKAIPAGRATAAATGGPPLRVELAA 199

to top

>TAU_PANTR (Q5YCW1) Microtubule-associated protein tau|
          Length = 775

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
 Frame = +3

Query: 72  AANTQPAIANQKIATQP------SQKRRPPHHGDRGGLVAP----LPGVKVRAPEPALKP 221
           A  T P+ A +++  +P      S++  PP  GDR G  +P     PG + R P     P
Sbjct: 494 APKTPPSSATKQVQRRPPPAGPRSERGEPPKSGDRSGYSSPGSPGTPGSRSRTPSLPTPP 553

to top

>TAU_GORGO (Q5YCW0) Microtubule-associated protein tau|
          Length = 775

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
 Frame = +3

Query: 72  AANTQPAIANQKIATQP------SQKRRPPHHGDRGGLVAP----LPGVKVRAPEPALKP 221
           A  T P+ A +++  +P      S++  PP  GDR G  +P     PG + R P     P
Sbjct: 494 APKTPPSSATKQVQRRPPPAGPRSERGEPPKSGDRSGYSSPGSPGTPGSRSRTPSLPTPP 553

to top

>LOXL4_BOVIN (Q8MJ24) Lysyl oxidase homolog 4 precursor (EC 1.4.3.-) (Lysyl|
           oxidase-like protein 4)
          Length = 757

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 36  TRTTVLWLPGTAAANTQPAIANQKIATQPSQ-KRRPPHHGDRGGLVAPLPGVKVRAPE 206
           T+    W+       T+P +AN ++   P+Q K RP   G    +V+ + G + R P+
Sbjct: 240 TKKNSFWIHRVNCLGTEPHMANCQVQVAPAQGKLRPACPGGMHAVVSCVAGPRFRPPK 297

to top

>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43)
          Length = 4903

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/76 (23%), Positives = 35/76 (46%)
 Frame = +3

Query: 3    AASGENSPYPHTRTTVLWLPGTAAANTQPAIANQKIATQPSQKRRPPHHGDRGGLVAPLP 182
            A SG+    PH+       PG +   + PA+++   +  P Q+++ P          P+P
Sbjct: 3611 AESGKAPSTPHSDCAAPLTPGLSETTSTPAVSSP--SELPQQRQQEPVE------PVPVP 3662

Query: 183  GVKVRAPEPALKPQNR 230
               V A +P ++ +N+
Sbjct: 3663 TPNVSAGQPCIESENK 3678

to top

>IF2_PELCD (Q3A4A7) Translation initiation factor IF-2|
          Length = 947

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +3

Query: 66  TAAANTQPAIANQKIATQPSQKRRPPHHGDRGGLVAPLPGVKVRAP 203
           TA A   PA   Q ++ QP     PP  G +  + AP P  K   P
Sbjct: 94  TAVAEEAPAEEVQPVSDQPEIAVEPPPAGKQEEVAAPAPEPKAEEP 139

to top

>PKHA6_MOUSE (Q7TQG1) Pleckstrin homology domain-containing family A member 6|
           (Phosphoinositol 3-phosphate-binding protein 3) (PEPP-3)
          Length = 1173

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/53 (33%), Positives = 21/53 (39%)
 Frame = +3

Query: 6   ASGENSPYPHTRTTVLWLPGTAAANTQPAIANQKIATQPSQKRRPPHHGDRGG 164
           AS   SPYP        +PG      QP        ++P     PPH GD GG
Sbjct: 246 ASEPGSPYPDGPR----VPGGGEHPAQPNGWQYSSPSRPGSTAFPPHDGDSGG 294

to top

>ACVS_NOCLA (P27743) N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase|
            (EC 6.3.2.26)
            (Delta-(L-alpha-aminoadipyl)-L-cysteinyl-D-valine
            synthetase) (ACV synthetase) (ACVS)
          Length = 3649

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
 Frame = +3

Query: 30   PHTRTTVLWLPGTA--AANTQPAIANQKIATQPSQKRRPPHHGDRGGLV----APLPGV 188
            P  R TV W       A    P    + +    + +RR PHHG   G +    APLP V
Sbjct: 3262 PDVRDTVGWFTTMHPFAVEVDPGDLGRSVLATRANRRRVPHHGIGYGALFGGEAPLPAV 3320

to top

>BRE1B_MACFA (Q4R7K7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING|
           finger protein 40)
          Length = 1001

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +3

Query: 147 HGDRGGLVAPLPGVKVRAPEPALKPQNRTT*RPV 248
           H +  GL AP PG +   P P   P NR    PV
Sbjct: 534 HPEDSGLSAPAPGKEEGGPGPVSTPDNRKEMAPV 567

to top

>AQPM_METTM (Q9C4Z5) Aquaporin aqpM|
          Length = 246

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
 Frame = -3

Query: 238 YVVRFWGLSAGSGARTLTPGRGATRPPRSPW------CGGLRFWLGWVAIFWFAMAGCVF 77
           +++ F+G  AGS A TL    G T P  +P+       GGL  W+     F FA+A  ++
Sbjct: 16  FILVFFG--AGSAAVTLMIASGGTSP--NPFNIGIGLLGGLGDWVAIGLAFGFAIAASIY 71

Query: 76  AAA-VPGSH 53
           A   + G H
Sbjct: 72  ALGNISGCH 80

to top

>IF2_CORGL (Q8NP40) Translation initiation factor IF-2|
          Length = 1004

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +3

Query: 60  PGTAAANTQPAIANQKIATQPSQKRRPPHHGDRGGLVAPLPGVKVRAPEPALKP 221
           P   AA   P+ A    A +P+   +P   G       P PG   +  EPA KP
Sbjct: 130 PAKPAAPAAPSAAKSGSAPKPAAAAKPAFSG-------PTPGDAAKKAEPAAKP 176

to top

>LOXL4_HUMAN (Q96JB6) Lysyl oxidase homolog 4 precursor (EC 1.4.3.-) (Lysyl|
           oxidase-like protein 4) (Lysyl oxidase-related protein
           C)
          Length = 756

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 36  TRTTVLWLPGTAAANTQPAIANQKIATQPSQ-KRRPPHHGDRGGLVAPLPGVKVRAPEPA 212
           T     W+       T+P +AN ++   P++ K RP   G    +V+ + G   R P+  
Sbjct: 239 TNKNSFWIHQVTCLGTEPHMANCQVQVAPARGKLRPACPGGMHAVVSCVAGPHFRPPK-- 296

Query: 213 LKPQNR 230
            KPQ +
Sbjct: 297 TKPQRK 302

to top

>PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presynaptic|
           cytomatrix protein) (Brain-derived HLMN protein)
          Length = 5038

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 30  PHTRTTVLWLPGTAAANTQPAIANQKIATQPSQKRRPP 143
           P T  T+   P +AAA ++PAI + ++  Q      PP
Sbjct: 670 PKTTETLTDSPSSAAATSKPAILSSQVQAQAQVTTAPP 707

to top

>LAC1_BOTCI (Q12570) Laccase (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase)|
           (Urishiol oxidase) (Diphenol oxidase) (Fragment)
          Length = 486

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 226 FWGLSAGSGARTLTPGRGATRPPR 155
           FW LS G+GA T T       PPR
Sbjct: 379 FWTLSQGTGAYTATTALNLVNPPR 402

to top

>AMEL_MONDO (Q28462) Amelogenin|
          Length = 202

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +3

Query: 75  ANTQPAIANQKIATQPSQKRRPPHHGDRGGLVAPLPGVKVRAPEPALKPQNRTT*RPV 248
           A  QPA   Q +   P Q    P    +  L  P PG +   P+PA +PQ     +P+
Sbjct: 74  AAQQPAPPQQPVMPVPGQHPMAPTQHHQPNL--PQPGQQPYQPQPAQQPQPHQPIQPI 129

to top

>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2|
          Length = 969

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
 Frame = +3

Query: 60  PGTAAANTQPAIANQKIATQPSQKR-----RPPHHGDRGGLV--APLPGVKVRAPEPALK 218
           PG       P + N   ++QP+ +R     RP   G R G     P PG    AP P   
Sbjct: 167 PGPKPGPKTPRVGNNPYSSQPAPERERPAARPGPGGPRPGPAQGGPRPGPGQGAPRPGAT 226

Query: 219 PQNR 230
           P  R
Sbjct: 227 PGPR 230

to top

>BUD3_ASHGO (Q9HF61) Bud site selection protein BUD3|
          Length = 1478

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 78   NTQPAIANQKIATQPSQKRRPPH 146
            NTQ AIA + +A+   QKR+P H
Sbjct: 976  NTQKAIARELLASVDQQKRQPTH 998

to top

>DUFFY_PANTR (Q95LF3) Duffy antigen/chemokine receptor (CD234 antigen)|
          Length = 336

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 143 WWPPFLAWLGSDLLVRNGWLCICRCRAREPQD 48
           WWP  +  LG D LVR+  L +  C AR+  D
Sbjct: 253 WWPHGVV-LGLDFLVRSKLLLLSTCLARQALD 283

to top

>TAU_HYLLA (Q5YCV9) Microtubule-associated protein tau|
          Length = 775

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
 Frame = +3

Query: 72  AANTQPAIANQKIATQP------SQKRRPPHHGDRGGLVAP----LPGVKVRAPEPALKP 221
           A  T P+   +++  +P      S++  PP  GDR G  +P     PG + R P     P
Sbjct: 494 APKTPPSSVTKQVQRRPPPAGPKSERGEPPKSGDRSGYSSPGSPGTPGSRSRTPSLPTPP 553

to top

>GLGB_SYNEL (Q8DLB8) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 766

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 173 SDEAAAVAMVWWPPFLAWLGSDLLVRNGWL 84
           ++E+ A  MV WP ++  LG +L    GW+
Sbjct: 483 AEESTAWPMVSWPTYMGGLGFNLKWNMGWM 512

to top

>RYR1_PIG (P16960) Ryanodine receptor 1 (Skeletal muscle-type ryanodine|
            receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release
            channel)
          Length = 5035

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 20/64 (31%), Positives = 22/64 (34%)
 Frame = +3

Query: 30   PHTRTTVLWLPGTAAANTQPAIANQKIATQPSQKRRPPHHGDRGGLVAPLPGVKVRAPEP 209
            P TR   L+ PG    N         +    S   RPPHH      VA LP V       
Sbjct: 1740 PETRAITLFPPGKRTENGPRRHGLPGVGVTTSL--RPPHHFSAPCFVAALPAVGAAEAPA 1797

Query: 210  ALKP 221
             L P
Sbjct: 1798 RLSP 1801

to top

>BLI1_CAEEL (Q09457) Cuticle collagen bli-1 (Blistered cuticle protein 1)|
          Length = 963

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 22/72 (30%), Positives = 27/72 (37%)
 Frame = +3

Query: 15  ENSPYPHTRTTVLWLPGTAAANTQPAIANQKIATQPSQKRRPPHHGDRGGLVAPLPGVKV 194
           ENS   H R          A   Q    +++   +P  KR PP H      + P     V
Sbjct: 623 ENSGAEHQRRPNYEPSAEVAPPRQDRYEDEERVREPPPKRPPPPHRQTPHELYPEEQPYV 682

Query: 195 RAPEPALKPQNR 230
           R P P   PQNR
Sbjct: 683 RRPPP---PQNR 691

to top

>Y705_DEIRA (Q9RWG3) Hypothetical protein DR0705|
          Length = 308

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 14  RK*PLSTHSHDGLVAPGHGSGKYTASHCEPEDRYPAKPKTEATTPW 151
           +K  LS   H G+   G+G  +  A H  P +     P  +  TPW
Sbjct: 43  KKPALSAVQHWGVQLTGYGQTRLNAVHTSPFELVVVDPFDDDGTPW 88

to top

>RYR1_RABIT (P11716) Ryanodine receptor 1 (Skeletal muscle-type ryanodine|
            receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release
            channel)
          Length = 5037

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
 Frame = +3

Query: 30   PHTRTTVLWLPGTAAANTQP-AIANQKIATQPSQKRRPPHHGDRGGLVAPLPGVKVRAPE 206
            P TR   L+ PG    N +   +    + T      RPPHH      VA LP   V    
Sbjct: 1740 PETRAITLFPPGRKGGNARRHGLPGVGVTTS----LRPPHHFSPPCFVAALPAAGVAEAP 1795

Query: 207  PALKP 221
              L P
Sbjct: 1796 ARLSP 1800

to top

>APA_MYCTU (Q50906) Alanine and proline-rich secreted protein apa precursor|
           (45/47 kDa antigen) (Fibronectin attachment protein)
           (Immunogenic protein MPT32) (Antigen MPT-32) (45-kDa
           glycoprotein) (FAP-B)
          Length = 325

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 21/72 (29%), Positives = 26/72 (36%)
 Frame = +3

Query: 6   ASGENSPYPHTRTTVLWLPGTAAANTQPAIANQKIATQPSQKRRPPHHGDRGGLVAPLPG 185
           A+ +  P P   TT    P TAAA   PA     +A  P      P+        AP P 
Sbjct: 37  ANADPEPAPPVPTTAASPPSTAAAPPAPA---TPVAPPPPAAANTPNAQPGDPNAAPPPA 93

Query: 186 VKVRAPEPALKP 221
                P P + P
Sbjct: 94  DPNAPPPPVIAP 105

to top

>APA_MYCBO (O30620) Alanine and proline-rich secreted protein apa precursor|
           (Fibronectin attachment protein) (45/47 kDa antigen)
           (FAP-B)
          Length = 325

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 21/72 (29%), Positives = 26/72 (36%)
 Frame = +3

Query: 6   ASGENSPYPHTRTTVLWLPGTAAANTQPAIANQKIATQPSQKRRPPHHGDRGGLVAPLPG 185
           A+ +  P P   TT    P TAAA   PA     +A  P      P+        AP P 
Sbjct: 37  ANADPEPAPPVPTTAASPPSTAAAPPAPA---TPVAPPPPAAANTPNAQPGDPNAAPPPA 93

Query: 186 VKVRAPEPALKP 221
                P P + P
Sbjct: 94  DPNAPPPPVIAP 105

to top

>BRE1B_HUMAN (O75150) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING|
           finger protein 40) (95 kDa retinoblastoma-associated
           protein) (RBP95)
          Length = 1001

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 147 HGDRGGLVAPLPGVKVRAPEPALKPQNRTT*RPV 248
           H +  G+ AP PG +   P P   P NR    PV
Sbjct: 534 HPEDSGVSAPAPGKEEGGPGPVSTPDNRKEMAPV 567

to top

>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
            (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon)
            (Somatostatin receptor-interacting protein)
            (SSTR-interacting protein) (SSTRIP)
          Length = 2167

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/68 (27%), Positives = 25/68 (36%)
 Frame = +3

Query: 12   GENSPYPHTRTTVLWLPGTAAANTQPAIANQKIATQPSQKRRPPHHGDRGGLVAPLPGVK 191
            G   P PH   +  W     AA  +P      +    + + RPP  G RG      PGV 
Sbjct: 1469 GPEPPTPHPGVSKAW---RTAAPEEPERLPLHVRFLENCQARPPPAGTRGSSTEDGPGVP 1525

Query: 192  VRAPEPAL 215
              +P   L
Sbjct: 1526 PPSPRRVL 1533

to top

>K0574_HUMAN (O60320) Protein KIAA0574 (Fragment)|
          Length = 405

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
 Frame = +3

Query: 6   ASGENSPYPHTRTTVLWLPGTAAANTQPAIANQKIATQPSQKRRP-----PHHGDRGGLV 170
           ++G ++P P   T++L   GTA   + P+      A  PS+   P     P     G  V
Sbjct: 194 SAGFSTPVPADSTSLLVSEGTATPGSSPSPDGPVGAPAPSEPALPPGRVSPEDPGMGSQV 253

Query: 171 APLPG 185
            P PG
Sbjct: 254 QPGPG 258

to top

>Y7333_BRAJA (Q89DV4) UPF0182 protein bll7333|
          Length = 927

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 107 LLVRNGWLCICRCRAREPQDRRASVWIRA 21
           +L+ NGWL +   R R  Q   ASVW  A
Sbjct: 78  ILLLNGWLALHFARRRSTQLAAASVWSAA 106

to top

>CMLA_PSEAE (P32482) Chloramphenicol resistance protein|
          Length = 419

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -3

Query: 163 PPRSPWCGGL-RFWLGWVAIFWFAMAGCVFAAA 68
           P   P  G L   WLGW AIF F   G + A+A
Sbjct: 152 PAVGPLLGALVDMWLGWRAIFAFLGLGMIAASA 184

to top

>CCMF_ECOLI (P33927) Cytochrome c-type biogenesis protein ccmF|
          Length = 647

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -2

Query: 221 GLERRLWSANFDAGERSDEAAAVAMVWWPPFLAWL--GSDLLVRNGWLCICRCRARE 57
           G+ R L++A    GE  +  A    +++ PF+ W+  G  ++   G LC+   R R+
Sbjct: 582 GITRDLYAA---LGEELENGAWAVRLYYKPFVRWIWAGGLMMALGGLLCLFDPRYRK 635

to top

>Y5204_STRCO (Q9FCI4) UPF0182 protein SCO5204|
          Length = 1000

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 12  GENSPYPHTRTTVLWLPG-TAAANTQPAIANQKIATQPSQKRRPPHHGD 155
           G +  YP  R  ++   G TA  NT  A  N+    Q ++  +PP  GD
Sbjct: 846 GGDLKYPLLRKVLVSYGGNTAFENTLDAALNKVFGAQAAETEQPPDEGD 894

to top

>RCOR3_MOUSE (Q6PGA0) REST corepressor 3|
          Length = 451

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = +3

Query: 69  AAANTQPAIANQKIATQPSQKRRPPHHGDRGGLVAPLPGVKVRAPEPALKPQN----RTT 236
           A  N  P +    +   P+  R+PP    +   + P P +  + P P ++P N    R  
Sbjct: 365 ATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTLN-QPPPPLIRPANSMPPRLN 423

Query: 237 *RPV 248
            RPV
Sbjct: 424 PRPV 427

to top

>RCOR3_HUMAN (Q9P2K3) REST corepressor 3|
          Length = 495

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = +3

Query: 69  AAANTQPAIANQKIATQPSQKRRPPHHGDRGGLVAPLPGVKVRAPEPALKPQN----RTT 236
           A  N  P +    +   P+  R+PP    +   + P P +  + P P ++P N    R  
Sbjct: 409 ATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTLN-QPPPPLIRPANSMPPRLN 467

Query: 237 *RPV 248
            RPV
Sbjct: 468 PRPV 471

to top

>GLGB_SALTY (Q8ZLG5) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 728

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -3

Query: 211 AGSGARTLTPGRGATRPPRSPWCGGLRFWLGW 116
           A S A   T   G TRPP +   GGL FW  W
Sbjct: 453 AVSMAEESTDFSGVTRPPET---GGLGFWYKW 481

to top

>GLGB_SALTI (Q8Z235) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 728

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -3

Query: 211 AGSGARTLTPGRGATRPPRSPWCGGLRFWLGW 116
           A S A   T   G TRPP +   GGL FW  W
Sbjct: 453 AVSMAEESTDFSGVTRPPET---GGLGFWYKW 481

to top

>GLGB_SALPA (Q5PM06) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 728

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -3

Query: 211 AGSGARTLTPGRGATRPPRSPWCGGLRFWLGW 116
           A S A   T   G TRPP +   GGL FW  W
Sbjct: 453 AVSMAEESTDFSGVTRPPET---GGLGFWYKW 481


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.126    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,345,469
Number of Sequences: 219361
Number of extensions: 937145
Number of successful extensions: 3838
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 3675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3833
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result