ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet39a09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 194 2e-46
2dbj|AP003545.2| Oryza sativa (japonica cultivar-group) genomic D... 194 2e-46
3ref|XM_465315.1| Oryza sativa (japonica cultivar-group), mRNA 78 3e-11
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
5dbj|AP004854.2| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
6dbj|AK070014.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
7gb|AF160490.1|AF160490S1 Sylvilagus floridanus transcription fac... 44 0.37
8gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 42 1.5
9emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete ... 42 1.5
10gb|AY944574.1| Allochromatium vinosum HoxE (hoxE) gene, partial ... 42 1.5
11dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.5
12gb|AY109307.1| Zea mays PCO130268 mRNA sequence 42 1.5
13gb|AC147651.4| Homo sapiens BAC clone RP13-689E11 from 7, comple... 40 5.8
14gb|DQ232586.1| Rhodobacter sphaeroides 2.4.1 plasmid A, partial ... 40 5.8
15gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
16gb|AC168268.2| Mus musculus BAC clone RP23-339K12 from chromosom... 40 5.8
17ref|NM_002607.4| Homo sapiens platelet-derived growth factor alp... 40 5.8
18ref|NM_033023.3| Homo sapiens platelet-derived growth factor alp... 40 5.8
19gb|AC135864.5| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
20gb|AC102352.9| Mus musculus chromosome 14, clone RP23-30H7, comp... 40 5.8
21gb|AY487174.1| Locusta migratoria angiotensin converting enzyme ... 40 5.8
22emb|CR933791.16| Zebrafish DNA sequence from clone DKEYP-101F6 i... 40 5.8
23gb|AC112268.3| Mus musculus BAC clone RP24-114C23 from 2, comple... 40 5.8
24emb|AL162581.11| Human DNA sequence from clone RP1-132F22 on chr... 40 5.8
25gb|AC116715.22| Mus musculus chromosome 5, clone RP23-129N14, co... 40 5.8
26emb|AL583921.1|MLEPRTN5 Mycobacterium leprae strain TN complete ... 40 5.8
27emb|AL035310.1|MLCB2533 Mycobacterium leprae cosmid B2533 40 5.8
28gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 5.8
29gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 5.8
30gb|AY027524.1| Frankia sp. CpI1 plasmid pFQ12, complete plasmid ... 40 5.8
31gb|AF417590.1|AF417590 Homo sapiens platelet-derived growth fact... 40 5.8
32dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
33gb|S51624.1|S51624S1 platelet-derived growth factor A-chain [hum... 40 5.8
34gb|AC084439.1|AC084439 Caenorhabditis briggsae cosmid CB005A09, ... 40 5.8
35dbj|BS000060.1| Pan troglodytes chromosome 22 clone:RP43-086L15,... 40 5.8
36dbj|AK121144.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
37gb|AC144755.3| Didelphis virginiana clone LB3-224H2, complete se... 40 5.8
38emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 5.8
39dbj|AP001678.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 5.8
40gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
41gb|AC111089.27| Mus musculus chromosome 5, clone RP23-156F20, co... 40 5.8
42dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 5.8
43gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold 40 5.8
44emb|AL845261.17| Mouse DNA sequence from clone RP23-174C9 on chr... 40 5.8
45gb|M21571.1|HUMPDGFA1 Human platelet-derived growth factor (PDGF... 40 5.8
46gb|M20488.1|HUMPDGA1 Human platelet-derived growth factor A-chai... 40 5.8
47gb|U00017.1|U00017 Mycobacterium leprae cosmid B2126 40 5.8
48dbj|AP001254.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 5.8 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  194 bits (98), Expect = 2e-46
 Identities = 137/150 (91%)
 Strand = Plus / Plus

                                                                            
Query: 142      ccggcgagcggaggcagccgcggctggccaaggagctgagcaggatcgagcctaagaagc 201
                |||| ||||||||||  |||||||| |||||||||||  ||||||||||||| |||||||
Sbjct: 15383674 ccggagagcggaggcctccgcggctagccaaggagcttggcaggatcgagcccaagaagc 15383733

                                                                            
Query: 202      tcgggatttggctcgtcgccggctgctgcctcgccctcctcacctacatctccttcgccc 261
                |||||||| |||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 15383734 tcgggattgggctggtcgccggctgctgcctcgctctcctcacctacatctcctttgccc 15383793

                                              
Query: 262      gcctcttcgccatctactccccggtcttcg 291
                |||| |||||||||||||| ||||||||||
Sbjct: 15383794 gccttttcgccatctactcgccggtcttcg 15383823



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 291      gagagcacgtccatggtgatgaagaacgc 319
                |||||||||||| ||||||||||||||||
Sbjct: 15383914 gagagcacgtccttggtgatgaagaacgc 15383942
to top
>dbj|AP003545.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0613F06
          Length = 184289

 Score =  194 bits (98), Expect = 2e-46
 Identities = 137/150 (91%)
 Strand = Plus / Plus

                                                                         
Query: 142   ccggcgagcggaggcagccgcggctggccaaggagctgagcaggatcgagcctaagaagc 201
             |||| ||||||||||  |||||||| |||||||||||  ||||||||||||| |||||||
Sbjct: 51189 ccggagagcggaggcctccgcggctagccaaggagcttggcaggatcgagcccaagaagc 51248

                                                                         
Query: 202   tcgggatttggctcgtcgccggctgctgcctcgccctcctcacctacatctccttcgccc 261
             |||||||| |||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 51249 tcgggattgggctggtcgccggctgctgcctcgctctcctcacctacatctcctttgccc 51308

                                           
Query: 262   gcctcttcgccatctactccccggtcttcg 291
             |||| |||||||||||||| ||||||||||
Sbjct: 51309 gccttttcgccatctactcgccggtcttcg 51338



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 291   gagagcacgtccatggtgatgaagaacgc 319
             |||||||||||| ||||||||||||||||
Sbjct: 51429 gagagcacgtccttggtgatgaagaacgc 51457
to top
>ref|XM_465315.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2113

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 84/99 (84%)
 Strand = Plus / Plus

                                                                       
Query: 185 gatcgagcctaagaagctcgggatttggctcgtcgccggctgctgcctcgccctcctcac 244
           ||||||||| |||||||||||  |  | ||| ||||||||||||||||||| ||||||||
Sbjct: 193 gatcgagcccaagaagctcggcgtcggcctcctcgccggctgctgcctcgcgctcctcac 252

                                                  
Query: 245 ctacatctccttcgcccgcctcttcgccatctactcccc 283
           |||| ||||| | |||   |||||||| |||||||||||
Sbjct: 253 ctacgtctcccttgccaagctcttcgcaatctactcccc 291
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 84/99 (84%)
 Strand = Plus / Plus

                                                                            
Query: 185      gatcgagcctaagaagctcgggatttggctcgtcgccggctgctgcctcgccctcctcac 244
                ||||||||| |||||||||||  |  | ||| ||||||||||||||||||| ||||||||
Sbjct: 13367258 gatcgagcccaagaagctcggcgtcggcctcctcgccggctgctgcctcgcgctcctcac 13367317

                                                       
Query: 245      ctacatctccttcgcccgcctcttcgccatctactcccc 283
                |||| ||||| | |||   |||||||| |||||||||||
Sbjct: 13367318 ctacgtctcccttgccaagctcttcgcaatctactcccc 13367356
to top
>dbj|AP004854.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1521_G01
          Length = 144102

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 84/99 (84%)
 Strand = Plus / Plus

                                                                         
Query: 185   gatcgagcctaagaagctcgggatttggctcgtcgccggctgctgcctcgccctcctcac 244
             ||||||||| |||||||||||  |  | ||| ||||||||||||||||||| ||||||||
Sbjct: 92509 gatcgagcccaagaagctcggcgtcggcctcctcgccggctgctgcctcgcgctcctcac 92568

                                                    
Query: 245   ctacatctccttcgcccgcctcttcgccatctactcccc 283
             |||| ||||| | |||   |||||||| |||||||||||
Sbjct: 92569 ctacgtctcccttgccaagctcttcgcaatctactcccc 92607
to top
>dbj|AK070014.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038E13, full
           insert sequence
          Length = 2112

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 84/99 (84%)
 Strand = Plus / Plus

                                                                       
Query: 185 gatcgagcctaagaagctcgggatttggctcgtcgccggctgctgcctcgccctcctcac 244
           ||||||||| |||||||||||  |  | ||| ||||||||||||||||||| ||||||||
Sbjct: 193 gatcgagcccaagaagctcggcgtcggcctcctcgccggctgctgcctcgcgctcctcac 252

                                                  
Query: 245 ctacatctccttcgcccgcctcttcgccatctactcccc 283
           |||| ||||| | |||   |||||||| |||||||||||
Sbjct: 253 ctacgtctcccttgccaagctcttcgcaatctactcccc 291
to top
>gb|AF160490.1|AF160490S1 Sylvilagus floridanus transcription factor p64 (c-myc) gene, exon 2
          Length = 760

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 318 gccccgcccgcgtccacggcgg 339
           ||||||||||||||||||||||
Sbjct: 491 gccccgcccgcgtccacggcgg 512
to top
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 352     agcaggccgtgccggtgcaga 372
               |||||||||||||||||||||
Sbjct: 1232221 agcaggccgtgccggtgcaga 1232201
to top
>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29
          Length = 283100

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 127    agccgccggccggccccggcgagcg 151
              ||||||||||||||| |||||||||
Sbjct: 147968 agccgccggccggcctcggcgagcg 147992
to top
>gb|AY944574.1| Allochromatium vinosum HoxE (hoxE) gene, partial cds; HoxF (hoxF),
           HoxU (hoxU), and HoxY (hoxY) genes, complete cds; and
           HoxH (hoxH) gene, partial cds
          Length = 4486

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 352 agcaggccgtgccggtgcaga 372
           |||||||||||||||||||||
Sbjct: 275 agcaggccgtgccggtgcaga 255
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 221     cggctgctgcctcgccctcctcacc 245
               ||||| |||||||||||||||||||
Sbjct: 1944779 cggctcctgcctcgccctcctcacc 1944755
to top
>gb|AY109307.1| Zea mays PCO130268 mRNA sequence
          Length = 3927

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 325  ccgcgtccacggcggtgccca 345
            |||||||||||||||||||||
Sbjct: 1537 ccgcgtccacggcggtgccca 1557
to top
>gb|AC147651.4| Homo sapiens BAC clone RP13-689E11 from 7, complete sequence
          Length = 162139

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   ccggccccggcgagcggagg 155
             ||||||||||||||||||||
Sbjct: 48248 ccggccccggcgagcggagg 48229
to top
>gb|DQ232586.1| Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequence
          Length = 114045

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 248   catctccttcgcccgcctcttcgccatc 275
             |||||||||||| | |||||||||||||
Sbjct: 32043 catctccttcgcgctcctcttcgccatc 32016
to top
>gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041C22,
              complete sequence
          Length = 161172

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 211    ggctcgtcgccggctgctgcctcg 234
              ||||||||||||||||| ||||||
Sbjct: 144457 ggctcgtcgccggctgccgcctcg 144434
to top
>gb|AC168268.2| Mus musculus BAC clone RP23-339K12 from chromosome 17, complete
             sequence
          Length = 184085

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     gtgattgttttgtttcttct 22
             ||||||||||||||||||||
Sbjct: 74517 gtgattgttttgtttcttct 74498
to top
>ref|NM_002607.4| Homo sapiens platelet-derived growth factor alpha polypeptide
           (PDGFA), transcript variant 1, mRNA
          Length = 2818

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 136 ccggccccggcgagcggagg 155
           ||||||||||||||||||||
Sbjct: 193 ccggccccggcgagcggagg 212
to top
>ref|NM_033023.3| Homo sapiens platelet-derived growth factor alpha polypeptide
           (PDGFA), transcript variant 2, mRNA
          Length = 2749

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 136 ccggccccggcgagcggagg 155
           ||||||||||||||||||||
Sbjct: 193 ccggccccggcgagcggagg 212
to top
>gb|AC135864.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0071K13, complete sequence
          Length = 176150

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 211   ggctcgtcgccggctgctgcctcg 234
             ||||||||||||||||| ||||||
Sbjct: 29399 ggctcgtcgccggctgccgcctcg 29376
to top
>gb|AC102352.9| Mus musculus chromosome 14, clone RP23-30H7, complete sequence
          Length = 248441

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      tgttttgtttcttctcttgc 27
              ||||||||||||||||||||
Sbjct: 113871 tgttttgtttcttctcttgc 113890
to top
>gb|AY487174.1| Locusta migratoria angiotensin converting enzyme mRNA, partial cds
          Length = 2061

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 334 cggcggtgcccagcacggag 353
           ||||||||||||||||||||
Sbjct: 298 cggcggtgcccagcacggag 279
to top
>emb|CR933791.16| Zebrafish DNA sequence from clone DKEYP-101F6 in linkage group 13,
              complete sequence
          Length = 176605

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 299    gtccatggtgatgaagaacgcccc 322
              ||||||||||||||||||| ||||
Sbjct: 111895 gtccatggtgatgaagaacacccc 111918
to top
>gb|AC112268.3| Mus musculus BAC clone RP24-114C23 from 2, complete sequence
          Length = 167775

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     gggtgattgttttgtttctt 20
             ||||||||||||||||||||
Sbjct: 89008 gggtgattgttttgtttctt 88989
to top
>emb|AL162581.11| Human DNA sequence from clone RP1-132F22 on chromosome 6 Contains the
             5' part of the GSTA4 gene for glutathione S-transferase A4
             and the 3' part of the KIAA0936 gene for a MAK-related
             kinase, complete sequence
          Length = 33993

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 387   gaggagcagaaagatctggg 406
             ||||||||||||||||||||
Sbjct: 23683 gaggagcagaaagatctggg 23702
to top
>gb|AC116715.22| Mus musculus chromosome 5, clone RP23-129N14, complete sequence
          Length = 193245

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     gtgatcttccatggcgtcca 105
              ||||||||||||||||||||
Sbjct: 185674 gtgatcttccatggcgtcca 185655
to top
>emb|AL583921.1|MLEPRTN5 Mycobacterium leprae strain TN complete genome; segment 5/10
          Length = 332450

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 370    agaagaaggtcgaagtcgaggagc 393
              |||||||||||||||||| |||||
Sbjct: 209916 agaagaaggtcgaagtcgcggagc 209939
to top
>emb|AL035310.1|MLCB2533 Mycobacterium leprae cosmid B2533
          Length = 40245

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 370  agaagaaggtcgaagtcgaggagc 393
            |||||||||||||||||| |||||
Sbjct: 5400 agaagaaggtcgaagtcgcggagc 5423
to top
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 160     cgcggctggccaaggagctg 179
               ||||||||||||||||||||
Sbjct: 1949055 cgcggctggccaaggagctg 1949036
to top
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 160     cgcggctggccaaggagctg 179
               ||||||||||||||||||||
Sbjct: 1908003 cgcggctggccaaggagctg 1907984
to top
>gb|AY027524.1| Frankia sp. CpI1 plasmid pFQ12, complete plasmid sequence
          Length = 22437

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 130  cgccggccggccccggcgag 149
            ||||||||||||||||||||
Sbjct: 3523 cgccggccggccccggcgag 3504
to top
>gb|AF417590.1|AF417590 Homo sapiens platelet-derived growth factor A chain (PDGFA) gene,
           exon 1 and partial sequence
          Length = 392

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 136 ccggccccggcgagcggagg 155
           ||||||||||||||||||||
Sbjct: 145 ccggccccggcgagcggagg 164
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 211      ggctcgtcgccggctgctgcctcg 234
                ||||||||||||||||| ||||||
Sbjct: 14919360 ggctcgtcgccggctgccgcctcg 14919337
to top
>gb|S51624.1|S51624S1 platelet-derived growth factor A-chain [human, Genomic, 1399 nt,
           segment 1 of 2]
          Length = 1399

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 136 ccggccccggcgagcggagg 155
           ||||||||||||||||||||
Sbjct: 685 ccggccccggcgagcggagg 704
to top
>gb|AC084439.1|AC084439 Caenorhabditis briggsae cosmid CB005A09, complete sequence
          Length = 82884

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     attgttttgtttcttctctt 25
             ||||||||||||||||||||
Sbjct: 20585 attgttttgtttcttctctt 20604
to top
>dbj|BS000060.1| Pan troglodytes chromosome 22 clone:RP43-086L15, map 22, complete
             sequences
          Length = 159919

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     ttgttttgtttcttctcttg 26
             ||||||||||||||||||||
Sbjct: 92520 ttgttttgtttcttctcttg 92501
to top
>dbj|AK121144.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078A01, full
            insert sequence
          Length = 1740

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 211  ggctcgtcgccggctgctgcctcg 234
            ||||||||||||||||| ||||||
Sbjct: 1214 ggctcgtcgccggctgccgcctcg 1237
to top
>gb|AC144755.3| Didelphis virginiana clone LB3-224H2, complete sequence
          Length = 116584

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     gattgttttgtttcttctct 24
             ||||||||||||||||||||
Sbjct: 80346 gattgttttgtttcttctct 80365
to top
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 161     gcggctggccaaggagctga 180
               ||||||||||||||||||||
Sbjct: 4439256 gcggctggccaaggagctga 4439237
to top
>dbj|AP001678.1| Homo sapiens genomic DNA, chromosome 21q, section 22/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      ttgttttgtttcttctcttg 26
              ||||||||||||||||||||
Sbjct: 213920 ttgttttgtttcttctcttg 213901
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 211      ggctcgtcgccggctgctgcctcg 234
                ||||||||||||||||| ||||||
Sbjct: 15001307 ggctcgtcgccggctgccgcctcg 15001284
to top
>gb|AC111089.27| Mus musculus chromosome 5, clone RP23-156F20, complete sequence
          Length = 211658

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     gtgatcttccatggcgtcca 105
              ||||||||||||||||||||
Sbjct: 153295 gtgatcttccatggcgtcca 153314
to top
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 128     gccgccggccggccccggcg 147
               ||||||||||||||||||||
Sbjct: 3101396 gccgccggccggccccggcg 3101415
to top
>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold
          Length = 1751794

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 5       gattgttttgtttcttctct 24
               ||||||||||||||||||||
Sbjct: 1559211 gattgttttgtttcttctct 1559230
to top
>emb|AL845261.17| Mouse DNA sequence from clone RP23-174C9 on chromosome 2, complete
              sequence
          Length = 182370

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      gggtgattgttttgtttctt 20
              ||||||||||||||||||||
Sbjct: 168046 gggtgattgttttgtttctt 168027
to top
>gb|M21571.1|HUMPDGFA1 Human platelet-derived growth factor (PDGFA) A chain gene, exon 1
          Length = 1209

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 136 ccggccccggcgagcggagg 155
           ||||||||||||||||||||
Sbjct: 453 ccggccccggcgagcggagg 472
to top
>gb|M20488.1|HUMPDGA1 Human platelet-derived growth factor A-chain gene, exon 1
          Length = 1285

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 136 ccggccccggcgagcggagg 155
           ||||||||||||||||||||
Sbjct: 491 ccggccccggcgagcggagg 510
to top
>gb|U00017.1|U00017 Mycobacterium leprae cosmid B2126
          Length = 42157

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 370   agaagaaggtcgaagtcgaggagc 393
             |||||||||||||||||| |||||
Sbjct: 26282 agaagaaggtcgaagtcgcggagc 26259
to top
>dbj|AP001254.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B66B12,
             LL56-APP region, complete sequence
          Length = 173915

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     ttgttttgtttcttctcttg 26
             ||||||||||||||||||||
Sbjct: 36513 ttgttttgtttcttctcttg 36494


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,209,371
Number of Sequences: 3902068
Number of extensions: 4209371
Number of successful extensions: 82862
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82220
Number of HSP's gapped (non-prelim): 638
length of query: 429
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 407
effective length of database: 17,147,199,772
effective search space: 6978910307204
effective search space used: 6978910307204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top