ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet38c09 |
|---|---|
| Clone Library Name | barley_pub |
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 68.6 bits (166), Expect = 8e-12 Identities = 35/68 (51%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Frame = +1 Query: 256 VPAVYVFGDSTVDVGNNQYLPGKSALQL-PYGIDFPQSMPTGRFSNGFNVADSISRLLGF 432 +PAV+ FGDS D GNN L K PYG+DFP + TGRFSNG +D IS+ LG Sbjct: 123 IPAVFFFGDSIFDTGNNNNLDTKLKCNYRPYGMDFPMGVATGRFSNGRVASDYISKYLGV 182 Query: 433 KRSPPAYL 456 K PAY+ Sbjct: 183 KEIVPAYV 190
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 66.2 bits (160), Expect = 4e-11 Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 1/83 (1%) Frame = +1 Query: 211 SPAAASGRAAGEVHLVPAVYVFGDSTVDVGNNQYLPGK-SALQLPYGIDFPQSMPTGRFS 387 SP A E +PAV+ FGDS D GNN L K + PYG+DF + TGRFS Sbjct: 187 SPKPAPSPPKPENKTIPAVFFFGDSVFDTGNNNNLETKIKSNYRPYGMDFKFRVATGRFS 246 Query: 388 NGFNVADSISRLLGFKRSPPAYL 456 NG +D +++ +G K PAYL Sbjct: 247 NGMVASDYLAKYMGVKEIVPAYL 269
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 33.1 bits (74), Expect = 0.37 Identities = 22/57 (38%), Positives = 30/57 (52%) Frame = +1 Query: 259 PAVYVFGDSTVDVGNNQYLPGKSALQLPYGIDFPQSMPTGRFSNGFNVADSISRLLG 429 PA++ FGDS D G G++ P+G F S P GR+ +G V D I+ LG Sbjct: 29 PAIFNFGDSNSDTGGLSAAFGQAG--PPHGSSFFGS-PAGRYCDGRLVIDFIAESLG 82
>GIDB_FRATT (Q5NEF0) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 205 Score = 32.7 bits (73), Expect = 0.48 Identities = 24/70 (34%), Positives = 34/70 (48%) Frame = +1 Query: 253 LVPAVYVFGDSTVDVGNNQYLPGKSALQLPYGIDFPQSMPTGRFSNGFNVADSISRLLGF 432 L A Y+ GDSTVDVG LPG + I +PQ + F + DS+ + + F Sbjct: 61 LAVAKYIKGDSTVDVGTGGGLPG-----VVLAILYPQ--------HQFTLVDSVGKKIMF 107 Query: 433 KRSPPAYLSL 462 ++ LSL Sbjct: 108 LKNVKKSLSL 117
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 32.7 bits (73), Expect = 0.48 Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Frame = +1 Query: 238 AGEVHLVPAVYVFGDSTVDVGNNQYLPGKSA----LQLPYGIDFPQSMPTGRFSNGFNVA 405 A E PA++ FGDS D G GK+A L PYG F TGR+S+G + Sbjct: 26 ASETCDFPAIFNFGDSNSDTG------GKAAAFYPLNPPYGETF-FHRSTGRYSDGRLII 78 Query: 406 DSISRLLGFKRSPPAYLS 459 D I+ P YLS Sbjct: 79 DFIAESFNLPYLSP-YLS 95
>ABCF1_RAT (Q6MG08) ATP-binding cassette sub-family F member 1 (ATP-binding| cassette 50) Length = 839 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -3 Query: 402 DVEPVAEPPGGHGLREVDAVGELQRAFPGEVLVVAHVHRGVAE 274 DV + EP + +DA+GE + G V+VV+H R + E Sbjct: 756 DVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDARLITE 798
>ABCF1_PIG (Q767L0) ATP-binding cassette sub-family F member 1| Length = 807 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -3 Query: 402 DVEPVAEPPGGHGLREVDAVGELQRAFPGEVLVVAHVHRGVAE 274 DV + EP + +DA+GE + G V+VV+H R + E Sbjct: 724 DVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDARLITE 766
>ABCF1_PANTR (Q7YR37) ATP-binding cassette sub-family F member 1 (ATP-binding| cassette 50) Length = 807 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -3 Query: 402 DVEPVAEPPGGHGLREVDAVGELQRAFPGEVLVVAHVHRGVAE 274 DV + EP + +DA+GE + G V+VV+H R + E Sbjct: 724 DVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDARLITE 766
>ABCF1_HUMAN (Q8NE71) ATP-binding cassette sub-family F member 1 (ATP-binding| cassette 50) (TNF-alpha-stimulated ABC protein) Length = 845 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -3 Query: 402 DVEPVAEPPGGHGLREVDAVGELQRAFPGEVLVVAHVHRGVAE 274 DV + EP + +DA+GE + G V+VV+H R + E Sbjct: 762 DVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDARLITE 804
>SYY_NOCFA (Q5YYA4) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA| ligase) (TyrRS) Length = 429 Score = 29.6 bits (65), Expect = 4.1 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Frame = -3 Query: 429 AQQPRDGVGDVEPVAEPPGGHGLREVDAVGELQRAFPGE--VLVVAHVHRGVAE 274 A Q G GD+ + E G LRE GE+ R PGE +V V G+AE Sbjct: 320 ASQALFGRGDLRELDEATLGAALREAAGEGEVARVTPGEPATIVDLLVATGLAE 373
>TSP3_HUMAN (P49746) Thrombospondin-3 precursor| Length = 956 Score = 29.6 bits (65), Expect = 4.1 Identities = 13/47 (27%), Positives = 21/47 (44%) Frame = +3 Query: 36 SKHIFPRASCHLPAYLAPQFFSHQQTQNSGPASCRRHDGGEGGAGCC 176 S+ P +CH PA+ +H + +G SC+ + G G C Sbjct: 409 SQGCLPARTCHSPAHSPCHIHAHCLFERNGAVSCQCNVGWAGNGNVC 455
>ABCF1_MOUSE (Q6P542) ATP-binding cassette sub-family F member 1| Length = 837 Score = 29.6 bits (65), Expect = 4.1 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -3 Query: 402 DVEPVAEPPGGHGLREVDAVGELQRAFPGEVLVVAHVHRGVAE 274 DV + EP + +DA+GE + G V+VV+H R + E Sbjct: 754 DVLILDEPTNNLDIESIDALGEAINDYKGAVIVVSHDARLITE 796
>SPT5H_CAEEL (Q21338) Transcription elongation factor SPT5 (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) Length = 1208 Score = 29.6 bits (65), Expect = 4.1 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = -3 Query: 153 PHHGAGS*LVHCFGFADGRRTAVQGRQVGGRMPA 52 P +G S +G ADG RT G GGR PA Sbjct: 868 PAYGNDSSRTPAYGSADGARTPAYGSTEGGRTPA 901
>GIDB_HAEIN (P44728) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 203 Score = 29.3 bits (64), Expect = 5.3 Identities = 24/71 (33%), Positives = 32/71 (45%) Frame = +1 Query: 253 LVPAVYVFGDSTVDVGNNQYLPGKSALQLPYGIDFPQSMPTGRFSNGFNVADSISRLLGF 432 LV + Y+ GD +DVG LPG LP I P S F + DS+ + + F Sbjct: 58 LVVSPYLQGDRFIDVGTGPGLPG-----LPLAIINP--------SKQFVLLDSLGKRISF 104 Query: 433 KRSPPAYLSLT 465 R+ L LT Sbjct: 105 IRNAIRELRLT 115
>GIDB_HAEI8 (Q4QN56) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 203 Score = 29.3 bits (64), Expect = 5.3 Identities = 24/71 (33%), Positives = 32/71 (45%) Frame = +1 Query: 253 LVPAVYVFGDSTVDVGNNQYLPGKSALQLPYGIDFPQSMPTGRFSNGFNVADSISRLLGF 432 LV + Y+ GD +DVG LPG LP I P S F + DS+ + + F Sbjct: 58 LVVSPYLQGDRFIDVGTGPGLPG-----LPLAIINP--------SKQFVLLDSLGKRISF 104 Query: 433 KRSPPAYLSLT 465 R+ L LT Sbjct: 105 IRNAIRELRLT 115
>TSP3_MOUSE (Q05895) Thrombospondin-3 precursor| Length = 956 Score = 29.3 bits (64), Expect = 5.3 Identities = 13/47 (27%), Positives = 21/47 (44%) Frame = +3 Query: 36 SKHIFPRASCHLPAYLAPQFFSHQQTQNSGPASCRRHDGGEGGAGCC 176 S+ P +CH PA+ +H + +G SC+ + G G C Sbjct: 409 SQGCVPARTCHSPAHSPCHIHAHCLFERNGAVSCQCNVGWAGNGNVC 455
>NEOR_STRCY (P14501) Neomycin resistance protein| Length = 437 Score = 29.3 bits (64), Expect = 5.3 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Frame = -3 Query: 426 QQPRDGVGDVEPVAEPPGGHG-LREVDAVGELQRAFPGE 313 Q+P G G P PPG H LR +G+L P E Sbjct: 245 QEPGPGAGTRRPQGRPPGQHDVLRTPSRIGDLMGGVPEE 283
>NEBU_HUMAN (P20929) Nebulin| Length = 6669 Score = 28.5 bits (62), Expect = 9.1 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +3 Query: 30 YHSKHIFPRASCHLPAYLAPQFFSHQ 107 Y +KH R CH+PA APQF H+ Sbjct: 773 YKAKHEGERFKCHIPAD-APQFIQHR 797 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,630,292 Number of Sequences: 219361 Number of extensions: 1178239 Number of successful extensions: 3306 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3141 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3302 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
