| Clone Name | baet38b02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK107013.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-F10, full insert sequence Length = 1683 Score = 103 bits (52), Expect = 5e-19 Identities = 145/176 (82%) Strand = Plus / Plus Query: 2 tggaaatggaagccctatggctgcgaggtaccgccgtttgagggcaagacgtttctggag 61 |||| |||||||||||||||||||||| | ||| |||||||||| ||| |||| ||||| Sbjct: 466 tggagatggaagccctatggctgcgagatgtcgcggtttgagggcgagaagtttttggag 525 Query: 62 gacatgaggggcaaacactgggcgctagtcggcgattcgatcctccgcaaccatgtccaa 121 | |||| |||| ||||| ||||| || | || ||||| |||||||| || || || ||| Sbjct: 526 gccatgcggggaaaacattgggctcttattggtgattcaatcctccgaaatcacgttcaa 585 Query: 122 tcgttgctctgcctcctttccaaggttgaagatcctacagaggtgtaccacgacaa 177 |||||||| ||||| ||| | ||||||||||| ||||| |||| ||||| ||||| Sbjct: 586 tcgttgctttgccttcttgctaaggttgaagagcctactcaggtctaccatgacaa 641
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 83.8 bits (42), Expect = 4e-13 Identities = 111/134 (82%) Strand = Plus / Plus Query: 2 tggaaatggaagccctatggctgcgaggtaccgccgtttgagggcaagacgtttctggag 61 |||| |||||||||||||||||||||| | ||| |||||||||| ||| |||| ||||| Sbjct: 19068795 tggagatggaagccctatggctgcgagatgtcgcggtttgagggcgagaagtttttggag 19068854 Query: 62 gacatgaggggcaaacactgggcgctagtcggcgattcgatcctccgcaaccatgtccaa 121 | |||| |||| ||||| ||||| || | || ||||| |||||||| || || || ||| Sbjct: 19068855 gccatgcggggaaaacattgggctcttattggtgattcaatcctccgaaatcacgttcaa 19068914 Query: 122 tcgttgctctgcct 135 |||||||| ||||| Sbjct: 19068915 tcgttgctttgcct 19068928
>dbj|AP004328.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1616_B03 Length = 96081 Score = 83.8 bits (42), Expect = 4e-13 Identities = 111/134 (82%) Strand = Plus / Plus Query: 2 tggaaatggaagccctatggctgcgaggtaccgccgtttgagggcaagacgtttctggag 61 |||| |||||||||||||||||||||| | ||| |||||||||| ||| |||| ||||| Sbjct: 66279 tggagatggaagccctatggctgcgagatgtcgcggtttgagggcgagaagtttttggag 66338 Query: 62 gacatgaggggcaaacactgggcgctagtcggcgattcgatcctccgcaaccatgtccaa 121 | |||| |||| ||||| ||||| || | || ||||| |||||||| || || || ||| Sbjct: 66339 gccatgcggggaaaacattgggctcttattggtgattcaatcctccgaaatcacgttcaa 66398 Query: 122 tcgttgctctgcct 135 |||||||| ||||| Sbjct: 66399 tcgttgctttgcct 66412
>gb|BT017458.1| Zea mays clone EL01N0407C06.c mRNA sequence Length = 1160 Score = 77.8 bits (39), Expect = 3e-11 Identities = 189/239 (79%) Strand = Plus / Plus Query: 38 tttgagggcaagacgtttctggaggacatgaggggcaaacactgggcgctagtcggcgat 97 ||||| ||||||| |||| |||| | ||||| ||||| || ||||| || | || ||| Sbjct: 26 tttgacggcaagaagtttttggatggcatgaaaggcaagcattgggcactcattggtgat 85 Query: 98 tcgatcctccgcaaccatgtccaatcgttgctctgcctcctttccaaggttgaagatcct 157 || ||||| |||||||| ||||| || ||||| || || ||||||||||| |||||| || Sbjct: 86 tccatccttcgcaaccacgtccagtcattgctttgtcttctttccaaggtcgaagatgct 145 Query: 158 acagaggtgtaccacgacaaaacctaccagtcgaggagatggcacttcccatcctacaac 217 || ||||| ||||||||| | || | | || || |||||||||||||| || ||||| Sbjct: 146 actgaggtttaccacgacgatacattcagatccagaagatggcacttcccttcgtacaat 205 Query: 218 ttcacgctctccctggtgtgggcgccgttcctcgtcaaggcggagatattcgaggacga 276 || ||| ||||||| || ||||| || ||||| ||||| || | ||||| |||||||| Sbjct: 206 tttacgatctcccttgtctgggcaccattcctggtcaaagctaaaatatttgaggacga 264
>gb|BT017845.1| Zea mays clone EL01N0510D05.c mRNA sequence Length = 1265 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 191 aggagatggcacttcccatcctacaacttcac 222 |||||||||||||||| ||||||||||||||| Sbjct: 272 aggagatggcacttccaatcctacaacttcac 303
>ref|XM_476169.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 738 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 191 aggagatggcacttcccatcctacaacttcac 222 |||||||||||||||| ||| ||||||||||| Sbjct: 535 aggagatggcacttccaatcatacaacttcac 566
>gb|AC136226.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0067H15, complete sequence Length = 184316 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 191 aggagatggcacttcccatcctacaacttcac 222 |||||||||||||||| ||| ||||||||||| Sbjct: 166419 aggagatggcacttccaatcatacaacttcac 166450
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 191 aggagatggcacttcccatcctacaacttcac 222 |||||||||||||||| ||| ||||||||||| Sbjct: 7041496 aggagatggcacttccaatcatacaacttcac 7041527
>dbj|AK061081.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-F03, full insert sequence Length = 1014 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 191 aggagatggcacttcccatcctacaacttcac 222 |||||||||||||||| ||| ||||||||||| Sbjct: 619 aggagatggcacttccaatcatacaacttcac 650
>ref|NM_186891.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1487 Score = 46.1 bits (23), Expect = 0.095 Identities = 26/27 (96%) Strand = Plus / Plus Query: 236 tgggcgccgttcctcgtcaaggcggag 262 ||||||||||||||||||| ||||||| Sbjct: 696 tgggcgccgttcctcgtcagggcggag 722
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.095 Identities = 26/27 (96%) Strand = Plus / Plus Query: 236 tgggcgccgttcctcgtcaaggcggag 262 ||||||||||||||||||| ||||||| Sbjct: 8862329 tgggcgccgttcctcgtcagggcggag 8862355
>dbj|AP005051.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0458G06 Length = 139109 Score = 46.1 bits (23), Expect = 0.095 Identities = 26/27 (96%) Strand = Plus / Plus Query: 236 tgggcgccgttcctcgtcaaggcggag 262 ||||||||||||||||||| ||||||| Sbjct: 92429 tgggcgccgttcctcgtcagggcggag 92455
>dbj|AK063314.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-G06, full insert sequence Length = 1487 Score = 46.1 bits (23), Expect = 0.095 Identities = 26/27 (96%) Strand = Plus / Plus Query: 236 tgggcgccgttcctcgtcaaggcggag 262 ||||||||||||||||||| ||||||| Sbjct: 696 tgggcgccgttcctcgtcagggcggag 722
>gb|DQ097234.1| Toxoplasma gondii ATP-binding cassette sub-family F member 1 (ABC.F1) gene, complete cds Length = 10000 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 gatcctccgcaaccatgtcca 120 ||||||||||||||||||||| Sbjct: 7246 gatcctccgcaaccatgtcca 7226
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 296 gagccgcggctgaccttcgac 316 ||||||||||||||||||||| Sbjct: 764691 gagccgcggctgaccttcgac 764671
>ref|XM_309356.2| Anopheles gambiae str. PEST ENSANGP00000015009 (ENSANGG00000012520), partial mRNA Length = 3810 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 258 cggagatattcgaggacgagaacgg 282 |||||||||||||||||||| |||| Sbjct: 1463 cggagatattcgaggacgaggacgg 1487
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 tcgacgtgctggacgccaac 331 |||||||||||||||||||| Sbjct: 620456 tcgacgtgctggacgccaac 620437
>gb|AY596296.1| Haloarcula marismortui ATCC 43049 plasmid pNG700, complete sequence Length = 410554 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 gacgagaacgggatctcgtc 291 |||||||||||||||||||| Sbjct: 132781 gacgagaacgggatctcgtc 132800
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 ccacggggcagtggttcttc 391 |||||||||||||||||||| Sbjct: 2319647 ccacggggcagtggttcttc 2319628
>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 Length = 2039961 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 actgggtggggcagtggagc 349 |||||||||||||||||||| Sbjct: 221454 actgggtggggcagtggagc 221473
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 gaggacgagaacgggatctc 288 |||||||||||||||||||| Sbjct: 2025630 gaggacgagaacgggatctc 2025611 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,846,968 Number of Sequences: 3902068 Number of extensions: 2846968 Number of successful extensions: 54555 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54249 Number of HSP's gapped (non-prelim): 306 length of query: 436 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 414 effective length of database: 17,147,199,772 effective search space: 7098940705608 effective search space used: 7098940705608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)