ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet38b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK107013.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
3dbj|AP004328.2| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
4gb|BT017458.1| Zea mays clone EL01N0407C06.c mRNA sequence 78 3e-11
5gb|BT017845.1| Zea mays clone EL01N0510D05.c mRNA sequence 56 1e-04
6ref|XM_476169.1| Oryza sativa (japonica cultivar-group), predic... 48 0.024
7gb|AC136226.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.024
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.024
9dbj|AK061081.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.024
10ref|NM_186891.2| Oryza sativa (japonica cultivar-group), mRNA 46 0.095
11dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.095
12dbj|AP005051.4| Oryza sativa (japonica cultivar-group) genomic D... 46 0.095
13dbj|AK063314.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.095
14gb|DQ097234.1| Toxoplasma gondii ATP-binding cassette sub-family... 42 1.5
15gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 1.5
16ref|XM_309356.2| Anopheles gambiae str. PEST ENSANGP00000015009 ... 42 1.5
17gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 5.9
18gb|AY596296.1| Haloarcula marismortui ATCC 43049 plasmid pNG700,... 40 5.9
19gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 40 5.9
20dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 40 5.9
21dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 5.9

>dbj|AK107013.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-F10, full
           insert sequence
          Length = 1683

 Score =  103 bits (52), Expect = 5e-19
 Identities = 145/176 (82%)
 Strand = Plus / Plus

                                                                       
Query: 2   tggaaatggaagccctatggctgcgaggtaccgccgtttgagggcaagacgtttctggag 61
           |||| |||||||||||||||||||||| |  ||| |||||||||| ||| |||| |||||
Sbjct: 466 tggagatggaagccctatggctgcgagatgtcgcggtttgagggcgagaagtttttggag 525

                                                                       
Query: 62  gacatgaggggcaaacactgggcgctagtcggcgattcgatcctccgcaaccatgtccaa 121
           | |||| |||| ||||| ||||| ||  | || ||||| |||||||| || || || |||
Sbjct: 526 gccatgcggggaaaacattgggctcttattggtgattcaatcctccgaaatcacgttcaa 585

                                                                   
Query: 122 tcgttgctctgcctcctttccaaggttgaagatcctacagaggtgtaccacgacaa 177
           |||||||| ||||| ||| | ||||||||||| |||||  |||| ||||| |||||
Sbjct: 586 tcgttgctttgccttcttgctaaggttgaagagcctactcaggtctaccatgacaa 641



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 111/134 (82%)
 Strand = Plus / Plus

                                                                            
Query: 2        tggaaatggaagccctatggctgcgaggtaccgccgtttgagggcaagacgtttctggag 61
                |||| |||||||||||||||||||||| |  ||| |||||||||| ||| |||| |||||
Sbjct: 19068795 tggagatggaagccctatggctgcgagatgtcgcggtttgagggcgagaagtttttggag 19068854

                                                                            
Query: 62       gacatgaggggcaaacactgggcgctagtcggcgattcgatcctccgcaaccatgtccaa 121
                | |||| |||| ||||| ||||| ||  | || ||||| |||||||| || || || |||
Sbjct: 19068855 gccatgcggggaaaacattgggctcttattggtgattcaatcctccgaaatcacgttcaa 19068914

                              
Query: 122      tcgttgctctgcct 135
                |||||||| |||||
Sbjct: 19068915 tcgttgctttgcct 19068928



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>dbj|AP004328.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1616_B03
          Length = 96081

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 111/134 (82%)
 Strand = Plus / Plus

                                                                         
Query: 2     tggaaatggaagccctatggctgcgaggtaccgccgtttgagggcaagacgtttctggag 61
             |||| |||||||||||||||||||||| |  ||| |||||||||| ||| |||| |||||
Sbjct: 66279 tggagatggaagccctatggctgcgagatgtcgcggtttgagggcgagaagtttttggag 66338

                                                                         
Query: 62    gacatgaggggcaaacactgggcgctagtcggcgattcgatcctccgcaaccatgtccaa 121
             | |||| |||| ||||| ||||| ||  | || ||||| |||||||| || || || |||
Sbjct: 66339 gccatgcggggaaaacattgggctcttattggtgattcaatcctccgaaatcacgttcaa 66398

                           
Query: 122   tcgttgctctgcct 135
             |||||||| |||||
Sbjct: 66399 tcgttgctttgcct 66412



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>gb|BT017458.1| Zea mays clone EL01N0407C06.c mRNA sequence
          Length = 1160

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 189/239 (79%)
 Strand = Plus / Plus

                                                                       
Query: 38  tttgagggcaagacgtttctggaggacatgaggggcaaacactgggcgctagtcggcgat 97
           ||||| ||||||| |||| |||| | |||||  ||||| || ||||| ||  | || |||
Sbjct: 26  tttgacggcaagaagtttttggatggcatgaaaggcaagcattgggcactcattggtgat 85

                                                                       
Query: 98  tcgatcctccgcaaccatgtccaatcgttgctctgcctcctttccaaggttgaagatcct 157
           || ||||| |||||||| ||||| || ||||| || || ||||||||||| |||||| ||
Sbjct: 86  tccatccttcgcaaccacgtccagtcattgctttgtcttctttccaaggtcgaagatgct 145

                                                                       
Query: 158 acagaggtgtaccacgacaaaacctaccagtcgaggagatggcacttcccatcctacaac 217
           || ||||| ||||||||| | || | |   || || |||||||||||||| || ||||| 
Sbjct: 146 actgaggtttaccacgacgatacattcagatccagaagatggcacttcccttcgtacaat 205

                                                                      
Query: 218 ttcacgctctccctggtgtgggcgccgttcctcgtcaaggcggagatattcgaggacga 276
           || ||| ||||||| || ||||| || ||||| ||||| ||  | ||||| ||||||||
Sbjct: 206 tttacgatctcccttgtctgggcaccattcctggtcaaagctaaaatatttgaggacga 264



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>gb|BT017845.1| Zea mays clone EL01N0510D05.c mRNA sequence
          Length = 1265

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 191 aggagatggcacttcccatcctacaacttcac 222
           |||||||||||||||| |||||||||||||||
Sbjct: 272 aggagatggcacttccaatcctacaacttcac 303



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>ref|XM_476169.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 738

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 191 aggagatggcacttcccatcctacaacttcac 222
           |||||||||||||||| ||| |||||||||||
Sbjct: 535 aggagatggcacttccaatcatacaacttcac 566



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>gb|AC136226.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0067H15,
              complete sequence
          Length = 184316

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                              
Query: 191    aggagatggcacttcccatcctacaacttcac 222
              |||||||||||||||| ||| |||||||||||
Sbjct: 166419 aggagatggcacttccaatcatacaacttcac 166450



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                               
Query: 191     aggagatggcacttcccatcctacaacttcac 222
               |||||||||||||||| ||| |||||||||||
Sbjct: 7041496 aggagatggcacttccaatcatacaacttcac 7041527



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>dbj|AK061081.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-F03, full
           insert sequence
          Length = 1014

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 191 aggagatggcacttcccatcctacaacttcac 222
           |||||||||||||||| ||| |||||||||||
Sbjct: 619 aggagatggcacttccaatcatacaacttcac 650



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>ref|NM_186891.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1487

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 236 tgggcgccgttcctcgtcaaggcggag 262
           ||||||||||||||||||| |||||||
Sbjct: 696 tgggcgccgttcctcgtcagggcggag 722



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 236     tgggcgccgttcctcgtcaaggcggag 262
               ||||||||||||||||||| |||||||
Sbjct: 8862329 tgggcgccgttcctcgtcagggcggag 8862355



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>dbj|AP005051.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0458G06
          Length = 139109

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 236   tgggcgccgttcctcgtcaaggcggag 262
             ||||||||||||||||||| |||||||
Sbjct: 92429 tgggcgccgttcctcgtcagggcggag 92455



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>dbj|AK063314.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-G06, full
           insert sequence
          Length = 1487

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 236 tgggcgccgttcctcgtcaaggcggag 262
           ||||||||||||||||||| |||||||
Sbjct: 696 tgggcgccgttcctcgtcagggcggag 722



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>gb|DQ097234.1| Toxoplasma gondii ATP-binding cassette sub-family F member 1 (ABC.F1)
            gene, complete cds
          Length = 10000

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 100  gatcctccgcaaccatgtcca 120
            |||||||||||||||||||||
Sbjct: 7246 gatcctccgcaaccatgtcca 7226



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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 296    gagccgcggctgaccttcgac 316
              |||||||||||||||||||||
Sbjct: 764691 gagccgcggctgaccttcgac 764671



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>ref|XM_309356.2| Anopheles gambiae str. PEST ENSANGP00000015009 (ENSANGG00000012520),
            partial mRNA
          Length = 3810

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 258  cggagatattcgaggacgagaacgg 282
            |||||||||||||||||||| ||||
Sbjct: 1463 cggagatattcgaggacgaggacgg 1487



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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    tcgacgtgctggacgccaac 331
              ||||||||||||||||||||
Sbjct: 620456 tcgacgtgctggacgccaac 620437



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>gb|AY596296.1| Haloarcula marismortui ATCC 43049 plasmid pNG700, complete sequence
          Length = 410554

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 272    gacgagaacgggatctcgtc 291
              ||||||||||||||||||||
Sbjct: 132781 gacgagaacgggatctcgtc 132800



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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 372     ccacggggcagtggttcttc 391
               ||||||||||||||||||||
Sbjct: 2319647 ccacggggcagtggttcttc 2319628



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>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010
          Length = 2039961

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 330    actgggtggggcagtggagc 349
              ||||||||||||||||||||
Sbjct: 221454 actgggtggggcagtggagc 221473



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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 269     gaggacgagaacgggatctc 288
               ||||||||||||||||||||
Sbjct: 2025630 gaggacgagaacgggatctc 2025611


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,846,968
Number of Sequences: 3902068
Number of extensions: 2846968
Number of successful extensions: 54555
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54249
Number of HSP's gapped (non-prelim): 306
length of query: 436
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 414
effective length of database: 17,147,199,772
effective search space: 7098940705608
effective search space used: 7098940705608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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