>ADRB1_CANFA (P79148) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor)
          Length = 473

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = -1

Query: 239 RGTHRRTGKPP---PPPSTCLRRETDDPD-DDASAALGA 135
           RG+H   G PP   PPPS     + DD D DDA A  GA
Sbjct: 396 RGSHGAAGDPPRARPPPSPGAASDDDDDDEDDAGAGAGA 434

>TRI37_MOUSE (Q6PCX9) Tripartite motif protein 37|
          Length = 961

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 277 LAEQRVPLGPPRSGEPTVGLESLRHRRRHVCAA 179
           L E     GPP S    VG  S   RR H+C+A
Sbjct: 575 LMEDAAAAGPPGSSHSYVGASSRMSRRTHLCSA 607

>UL51_PRVKA (Q85227) Protein UL51|
          Length = 236

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -1

Query: 239 RGTHRRTGKPPPPPSTCLRRETDDPDDDASAAL 141
           R T  R   PPPP       E D P+DDA+  L
Sbjct: 181 RATAARPAPPPPPEEAGEDEEGDRPEDDAAPLL 213

>TOM1_MOUSE (O88746) Target of Myb protein 1|
          Length = 492

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 218 GKPPPPPSTCLRRETDDPDDDASAAL 141
           G P P P T  RR+T + DDD   AL
Sbjct: 467 GPPRPSPGTAPRRKTQEKDDDMLFAL 492

>IF4B_YEAST (P34167) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 436

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 239 RGTHRRTGKPPPPPSTCLRRETDDPDDDASAALGANLE 126
           RG++ ++   PP      RRE ++PD D SAA G+N +
Sbjct: 292 RGSNFQSSSRPP------RREREEPDIDWSAARGSNFQ 323



 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 239 RGTHRRTGKPPPPPSTCLRRETDDPDDDASAALGANLE 126
           RG++ +    PP      RRE ++PD D SAA G+N +
Sbjct: 266 RGSNFQGSSRPP------RREREEPDIDWSAARGSNFQ 297

>ZN499_HUMAN (Q96K62) Zinc finger protein 499|
          Length = 511

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 14/66 (21%)
 Frame = -2

Query: 259 PLGPPRSGEPTVGLESLRHRRRHVCAAKP--------------TIRTMMPAPPSEQISNG 122
           P   P    P +    LRHR RH+ AA+P                R  +PAPP+   + G
Sbjct: 133 PTPLPTPVPPPLAPAQLRHRLRHLLAARPPGHPGAAHSRKQRQPARLQLPAPPTPAKAEG 192

Query: 121 RWICPS 104
               PS
Sbjct: 193 PDADPS 198

>YMU5_STRCM (Q05071) Hypothetical 25.0 kDa protein in mutA 5'region (ORF-D)|
          Length = 237

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -1

Query: 230 HRRTGKPPPPPSTCLRRETDDPDDDASAALGANLEWEMD 114
           HR   +PP PP     R     D  A AAL A+  W  D
Sbjct: 106 HREPVEPPRPPRGVTVRRLTPTDAPALAALSADSSWIYD 144

>GAG_JSRV (P31622) Gag polyprotein [Contains: Core protein p10; Core protein|
           p18; Core protein p12; Core protein p27; Core protein
           p14; Core protein p4]
          Length = 612

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 212 PPPPPSTCLRRETDDPDDDASAALGANLEWE 120
           PPPPP   L+    D DD  S+   A L+ E
Sbjct: 121 PPPPPPPSLKMHPSDNDDSLSSTDEAELDEE 151

>ZFNL2_ORYSA (Q5JLB5) Zinc finger CCCH type domain-containing protein ZFN-like 2|
          Length = 439

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 212 PPPPPST--CLRRETDDPDDDASAALGANLEWEMDLS 108
           PPPPPS        TD+P  D +A  G  +  +M +S
Sbjct: 31  PPPPPSQLPATAAATDEPSHDPAALYGEGMWQQMTMS 67

>SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100|
          Length = 1038

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 16/81 (19%)
 Frame = -2

Query: 292 PVAHLLAEQRVPLGPPRSGEPTVGLESLRHRRRHVCAAKPT-------------IRTMMP 152
           P +   A    P  PP+SG P  G E++  R     A++PT             + TM P
Sbjct: 15  PASSPFASAPPPGIPPQSGGPPTGSEAVGFRPFTPSASQPTRPFTASGPPPAPPVGTMRP 74

Query: 151 APPS---EQISNGRWICPSKN 98
             PS    QI   R   PS N
Sbjct: 75  GQPSPFVSQIPGSRPPPPSSN 95

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 277 LAEQRVPLGPPRSGEPTVGLESLRHRRRHVCAAKPTIRTMMPAPPSEQ 134
           L  +R P  PPR   P+    S   +RR+  +  P  RT  P PP ++
Sbjct: 569 LPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKR 616

>Y9637_RHILO (Q98P28) UPF0229 protein mll9637|
          Length = 436

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -2

Query: 289 VAHLLAEQRVPLGPPRSGEPTVGLESLRHRRRHVCAAKPTIRT--MMPAP 146
           +A L  E  VP+    +GEPT G +    RR+H+     T  +  ++P P
Sbjct: 43  IAELDREHVVPIPRKGTGEPTFGDDKESGRRQHILPGNRTFSSGDLIPKP 92

>PEXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precursor (PELP)|
          Length = 426

 Score = 23.5 bits (49), Expect(2) = 7.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 212 PPPPPSTCLRRETDDPDDDA 153
           PPPPPS C   +   PD  A
Sbjct: 149 PPPPPSPC---KPSPPDQSA 165



 Score = 22.7 bits (47), Expect(2) = 7.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 273 PSSASPLVLPDPGNP 229
           PSS SPLV P P  P
Sbjct: 139 PSSPSPLVKPPPPPP 153

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 268 QRVPLGPPRSGEPTVGLESLRHRRRHVCAAKPTIRTMMPAPPSEQ 134
           +R P  PPR   P+    S   +RR+  +  P  RT  P PP ++
Sbjct: 593 RRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKR 637

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 268 QRVPLGPPRSGEPTVGLESLRHRRRHVCAAKPTIRTMMPAPPSEQ 134
           +R P  PPR   P+    S   +RR+  +  P  RT  P PP ++
Sbjct: 579 RRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKR 623

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 268 QRVPLGPPRSGEPTVGLESLRHRRRHVCAAKPTIRTMMPAPPSEQ 134
           +R P  PPR   P+    S   +RR+  +  P  RT  P PP ++
Sbjct: 598 RRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKR 642

>PAIP1_XENLA (Q7ZYB4) Polyadenylate-binding protein-interacting protein 1|
           (Poly(A)-binding protein-interacting protein 1)
           (PABP-interacting protein 1) (PAIP-1) (Paip1 protein)
           (XlPaip1)
          Length = 463

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
 Frame = -2

Query: 274 AEQRVPLGPPRSGEP----TVGLESLRHRRRHVCAAKPTIRTMMPAPPSEQISNGR 119
           ++Q+ PL PPR+G P      G     H+R    A  P     M    ++    GR
Sbjct: 50  SQQQEPLRPPRTGPPGGGGDAGAAQTSHKRTSPAAQLPAHTYTMAVSKAQPADRGR 105

>FA47A_HUMAN (Q5JRC9) Protein FAM47A|
          Length = 778

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
 Frame = -2

Query: 298 EEPVAHLLAEQ-RVPLG-----PPRSGEPTVGLESLRHRRRHVCAAKPT---IRTMMPAP 146
           E P++HL  E  + P+      PP +GE  + LE  + RR     ++P+   +  +  AP
Sbjct: 307 ETPLSHLRQEPPKTPVSSLRPEPPETGESHLRLEHSKTRRGSSLRSEPSETGVSRLRLAP 366

Query: 145 PSEQISNGRWICPSKNKDKH 86
           P  +  +     PSK    H
Sbjct: 367 PKTRRGSSLHAEPSKTGVSH 386

>HEM1_ARCFU (O28304) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)|
          Length = 437

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 108 GQIHLPFEICSEGGAG--IIVRIVGFAAQTCRRRWRRLSSPTVGSPDRG 248
           GQ+   F +C EGG    ++ R+ G A Q   RR RR ++ + GS   G
Sbjct: 107 GQVRQCFNLCREGGQAGEVLERVFGKAVQV-GRRVRRETAISKGSVSIG 154

>RNR_BACSU (O32231) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein|
           homolog)
          Length = 779

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = -2

Query: 220 LESLRHRRRHVCAAKPTIRTMMPAPPSEQISNGRWICPSKNKDK 89
           L+S R R+R   A K    T  P  P+     G W    K K K
Sbjct: 720 LDSSRSRKRGKPARKRVQSTNTPVSPAPSEEKGEWFTKPKKKKK 763

>PRPH_MESAU (P06680) Acidic proline-rich protein HP43A precursor|
          Length = 183

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 230 HRRTGKPPPPPSTCLRRETDDPDDDASAALG 138
           H+R G+ PP PS       DD ++D +A  G
Sbjct: 39  HQRPGQFPPQPSASDEEGDDDGEEDGNAPEG 69


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,983,737
Number of Sequences: 219361
Number of extensions: 697329
Number of successful extensions: 3420
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3383
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)