ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet37g11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_001195.2| Homo sapiens beaded filament structural protein... 44 0.15
2emb|AL031664.1|HS531H16 Human DNA sequence from clone RP4-531H16... 44 0.15
3gb|AC010083.5|AC010083 Homo sapiens BAC clone RP11-125L14 from 2... 44 0.15
4gb|AF191045.1|AF191045S1 Homo sapiens beaded filament structural... 44 0.15
5emb|Y16717.2|HSFILC Homo sapiens mRNA for filensin, complete CDS 44 0.15
6gb|AF039655.1|AF039655 Homo sapiens filensin mRNA, complete cds 44 0.15
7gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 42 0.59
8emb|AJ251050.1|AFA251050 Avena fatua mRNA for VIP1 protein (vip1... 42 0.59
9gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic m... 42 0.59
10gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 0.59
11gb|AF184069.1|AF184069 Ustilago hordei pheromone Mfa2 (Mfa2) gen... 42 0.59
12gb|CP000110.1| Synechococcus sp. CC9605, complete genome 40 2.3
13gb|AY658419.1| Synthetic construct Peudomonas aeruginosa clone F... 40 2.3
14gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 2.3
15gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 2.3
16gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 2.3
17emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 2.3
18emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 2.3
19gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 2.3
20dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.3
21gb|AF271693.1|AF271693 Mycobacteriophage Bxb1, complete sequence 40 2.3
22dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 2.3
23gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 2.3
24dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 2.3
25dbj|AP005308.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.3
26dbj|AP005575.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.3
27emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 2.3
28gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 2.3
29gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 38 9.3
30ref|XM_513668.1| PREDICTED: Pan troglodytes tripartite motif-con... 38 9.3
31gb|AC105772.5| Oryza sativa (japonica cultivar-group) chromosome... 38 9.3
32ref|XM_612660.2| PREDICTED: Bos taurus similar to Transcription ... 38 9.3
33ref|NM_015906.3| Homo sapiens tripartite motif-containing 33 (TR... 38 9.3
34ref|NM_033020.2| Homo sapiens tripartite motif-containing 33 (TR... 38 9.3
35gb|AE007287.1| Sinorhizobium meliloti 1021 plasmid pSymA section... 38 9.3
36gb|BC088078.1| Xenopus tropicalis cell death-inducing DNA fragme... 38 9.3
37emb|AM085146.1| Magnetospirillum gryphiswaldense magnetosome island 38 9.3
38emb|AL390241.19| Human DNA sequence from clone RP11-343L14 on ch... 38 9.3
39ref|NM_001011434.1| Xenopus tropicalis cell death-inducing DNA f... 38 9.3
40emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete ... 38 9.3
41emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete ... 38 9.3
42gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 38 9.3
43dbj|AB029036.1| Homo sapiens mRNA for KIAA1113 protein, partial cds 38 9.3
44tpg|BK002672.1| TPA: TPA_inf: Drosophila melanogaster HDC14493 (... 38 9.3
45gb|AE012549.1| Xanthomonas campestris pv. campestris str. ATCC 3... 38 9.3
46ref|XM_938762.1| PREDICTED: Homo sapiens similar to ring finger ... 38 9.3
47ref|XM_929820.1| PREDICTED: Homo sapiens similar to ring finger ... 38 9.3
48gb|AC159000.2| Mus musculus BAC clone RP24-207K16 from chromosom... 38 9.3
49gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, com... 38 9.3
50gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 38 9.3
51gb|AC009209.6|AC009209 Drosophila melanogaster, chromosome 2R, r... 38 9.3
52gb|AF220137.1|AF220137 Homo sapiens tripartite motif protein TRI... 38 9.3
53gb|AF220136.1|AF220136 Homo sapiens tripartite motif protein TRI... 38 9.3
54dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.3
55dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.3
56gb|AC008260.5|AC008260 Drosophila melanogaster, chromosome 2R, r... 38 9.3
57gb|AC008192.8|AC008192 Drosophila melanogaster, chromosome 3R, r... 38 9.3
58gb|AC007471.4|AC007471 Drosophila melanogaster, chromosome 2R, r... 38 9.3
59gb|AC012313.7| Homo sapiens chromosome 19 clone CTD-2619J13, com... 38 9.3
60dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 38 9.3
61dbj|AP006164.2| Oryza sativa (japonica cultivar-group) genomic D... 38 9.3
62gb|AE005122.1| Halobacterium sp. NRC-1 section 153 of 170 of the... 38 9.3
63dbj|AK111047.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 9.3
64gb|U03114.2|SAU03114 Streptomyces albus lipase precursor (lip) a... 38 9.3
65gb|AE003726.3| Drosophila melanogaster chromosome 3R, section 64... 38 9.3
66gb|AE003835.4| Drosophila melanogaster chromosome 2R, section 15... 38 9.3
67gb|AE003827.3| Drosophila melanogaster chromosome 2R, section 23... 38 9.3
68gb|AF119043.1|AF119043 Homo sapiens transcriptional intermediary... 38 9.3
69gb|AC005860.1|AC005860 Drosophila melanogaster DNA sequence (P1s... 38 9.3
70emb|CR974473.23| Mouse DNA sequence from clone RP23-38P5 on chro... 38 9.3
71gb|AY875639.1| Drosophila melanogaster Dp205 mRNA, complete cds 38 9.3
72gb|AC165257.2| Mus musculus BAC clone RP23-162D3 from chromosome... 38 9.3 
>ref|NM_001195.2| Homo sapiens beaded filament structural protein 1, filensin
           (BFSP1), mRNA
          Length = 2176

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 166 gctcgggctcggcggcgcgcga 187
           ||||||||||||||||||||||
Sbjct: 85  gctcgggctcggcggcgcgcga 64
to top
>emb|AL031664.1|HS531H16 Human DNA sequence from clone RP4-531H16 on chromosome 20p11.22-12
              Contains the 3' end of the PCSK2 gene for proprotein
              convertase subtilisin/kexin type 2, the BFSP1 gene for
              beaded filament structural protein 1 (filensin), the TCTE1P
              gene for t-complex-associated-testis-expressed 1
              pseudogene, the  RPS27AP2 gene for ribosomal protein S27a
              pseudogene 2 and a CpG island, complete sequence
          Length = 155116

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 166    gctcgggctcggcggcgcgcga 187
              ||||||||||||||||||||||
Sbjct: 132615 gctcgggctcggcggcgcgcga 132636
to top
>gb|AC010083.5|AC010083 Homo sapiens BAC clone RP11-125L14 from 2, complete sequence
          Length = 200936

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 166   gctcgggctcggcggcgcgcga 187
             ||||||||||||||||||||||
Sbjct: 15062 gctcgggctcggcggcgcgcga 15041
to top
>gb|AF191045.1|AF191045S1 Homo sapiens beaded filament structural protein 1 filensin (BFSP1)
           gene, exon 1
          Length = 768

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 166 gctcgggctcggcggcgcgcga 187
           ||||||||||||||||||||||
Sbjct: 293 gctcgggctcggcggcgcgcga 272
to top
>emb|Y16717.2|HSFILC Homo sapiens mRNA for filensin, complete CDS
          Length = 2176

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 166 gctcgggctcggcggcgcgcga 187
           ||||||||||||||||||||||
Sbjct: 85  gctcgggctcggcggcgcgcga 64
to top
>gb|AF039655.1|AF039655 Homo sapiens filensin mRNA, complete cds
          Length = 2180

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 166 gctcgggctcggcggcgcgcga 187
           ||||||||||||||||||||||
Sbjct: 85  gctcgggctcggcggcgcgcga 64
to top
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 42.1 bits (21), Expect = 0.59
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 133    tgctgatcctcgcggtgctgg 153
              |||||||||||||||||||||
Sbjct: 434845 tgctgatcctcgcggtgctgg 434825
to top
>emb|AJ251050.1|AFA251050 Avena fatua mRNA for VIP1 protein (vip1 gene)
          Length = 1061

 Score = 42.1 bits (21), Expect = 0.59
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 151 tggtggccgcggcgtgctcgg 171
           |||||||||||||||||||||
Sbjct: 352 tggtggccgcggcgtgctcgg 332
to top
>gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic monensin biosynthesis
             gene cluster, partial sequence
          Length = 103450

 Score = 42.1 bits (21), Expect = 0.59
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 161   ggcgtgctcgggctcggcggcgcgc 185
             |||||||||||| ||||||||||||
Sbjct: 42994 ggcgtgctcgggttcggcggcgcgc 43018
to top
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 0.59
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 165     tgctcgggctcggcggcgcgc 185
               |||||||||||||||||||||
Sbjct: 3980124 tgctcgggctcggcggcgcgc 3980104
to top
>gb|AF184069.1|AF184069 Ustilago hordei pheromone Mfa2 (Mfa2) gene, complete cds
          Length = 120

 Score = 42.1 bits (21), Expect = 0.59
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 161 ggcgtgctcgggctcggcggc 181
           |||||||||||||||||||||
Sbjct: 69  ggcgtgctcgggctcggcggc 49
to top
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   cggtgctggtggccgcggcg 164
             ||||||||||||||||||||
Sbjct: 42874 cggtgctggtggccgcggcg 42893
to top
>gb|AY658419.1| Synthetic construct Peudomonas aeruginosa clone FLH047221.01F
           PA0475 gene, partial cds
          Length = 570

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 134 gctgatcctcgcggtgctgg 153
           ||||||||||||||||||||
Sbjct: 462 gctgatcctcgcggtgctgg 481
to top
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 139     tcctcgcggtgctggtggcc 158
               ||||||||||||||||||||
Sbjct: 1691090 tcctcgcggtgctggtggcc 1691109
to top
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    cggcgtgctcgggctcggcg 179
              ||||||||||||||||||||
Sbjct: 548618 cggcgtgctcgggctcggcg 548599
to top
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 143     cgcggtgctggtggccgcgg 162
               ||||||||||||||||||||
Sbjct: 1388477 cgcggtgctggtggccgcgg 1388496
to top
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 157     ccgcggcgtgctcgggctcg 176
               ||||||||||||||||||||
Sbjct: 3827226 ccgcggcgtgctcgggctcg 3827245
to top
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    cggcgtgctcgggctcggcg 179
              ||||||||||||||||||||
Sbjct: 357270 cggcgtgctcgggctcggcg 357251
to top
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 163     cgtgctcgggctcggcggcg 182
               ||||||||||||||||||||
Sbjct: 3947203 cgtgctcgggctcggcggcg 3947184
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 88       agccagccactcgatcgatc 107
                ||||||||||||||||||||
Sbjct: 16714440 agccagccactcgatcgatc 16714421
to top
>gb|AF271693.1|AF271693 Mycobacteriophage Bxb1, complete sequence
          Length = 50550

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 137   gatcctcgcggtgctggtggccgcggcg 164
             |||| ||||||||||| |||||||||||
Sbjct: 48325 gatcgtcgcggtgctgctggccgcggcg 48298
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 166     gctcgggctcggcggcgcgc 185
               ||||||||||||||||||||
Sbjct: 7777035 gctcgggctcggcggcgcgc 7777054
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 159     gcggcgtgctcgggctcggcggcg 182
               |||||||||||| |||||||||||
Sbjct: 1389625 gcggcgtgctcgcgctcggcggcg 1389648
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 163     cgtgctcgggctcggcggcg 182
               ||||||||||||||||||||
Sbjct: 3458890 cgtgctcgggctcggcggcg 3458909



 Score = 38.2 bits (19), Expect = 9.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                          
Query: 137     gatcctcgcggtgctggtggccgcggc 163
               |||||||||||||||| | ||||||||
Sbjct: 2794032 gatcctcgcggtgctgcttgccgcggc 2794006
to top
>dbj|AP005308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0047B10
          Length = 158798

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    agccagccactcgatcgatc 107
             ||||||||||||||||||||
Sbjct: 63134 agccagccactcgatcgatc 63115
to top
>dbj|AP005575.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1596_C06
          Length = 124721

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 88     agccagccactcgatcgatc 107
              ||||||||||||||||||||
Sbjct: 122579 agccagccactcgatcgatc 122560
to top
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 140     cctcgcggtgctggtggccg 159
               ||||||||||||||||||||
Sbjct: 3458123 cctcgcggtgctggtggccg 3458104
to top
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    cggcgtgctcgggctcggcg 179
              ||||||||||||||||||||
Sbjct: 346353 cggcgtgctcgggctcggcg 346334
to top
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 166     gctcgggctcggcggcgcg 184
               |||||||||||||||||||
Sbjct: 2158748 gctcgggctcggcggcgcg 2158730



 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 141    ctcgcggtgctggtggccg 159
              |||||||||||||||||||
Sbjct: 621597 ctcgcggtgctggtggccg 621615
to top
>ref|XM_513668.1| PREDICTED: Pan troglodytes tripartite motif-containing 33 protein
           (LOC457141), mRNA
          Length = 3267

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 152 ggtggccgcggcgtgctcgggctcggc 178
           |||||||||||| | ||||||||||||
Sbjct: 471 ggtggccgcggcctcctcgggctcggc 497
to top
>gb|AC105772.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1504_G04,
             complete sequence
          Length = 88812

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 143   cgcggtgctggtggccgcggcgtgctc 169
             ||||||||| || ||||||||||||||
Sbjct: 22306 cgcggtgctcgtcgccgcggcgtgctc 22332
to top
>ref|XM_612660.2| PREDICTED: Bos taurus similar to Transcription intermediary factor
           1-gamma (TIF1-gamma) (RET-fused gene 7 protein) (Rfg7
           protein) (Tripartite motif protein 33) (LOC533296), mRNA
          Length = 4076

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 152 ggtggccgcggcgtgctcgggctcggc 178
           |||||||||||| | ||||||||||||
Sbjct: 570 ggtggccgcggcctcctcgggctcggc 596
to top
>ref|NM_015906.3| Homo sapiens tripartite motif-containing 33 (TRIM33), transcript
           variant a, mRNA
          Length = 8339

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 152 ggtggccgcggcgtgctcgggctcggc 178
           |||||||||||| | ||||||||||||
Sbjct: 282 ggtggccgcggcctcctcgggctcggc 308
to top
>ref|NM_033020.2| Homo sapiens tripartite motif-containing 33 (TRIM33), transcript
           variant b, mRNA
          Length = 8288

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 152 ggtggccgcggcgtgctcgggctcggc 178
           |||||||||||| | ||||||||||||
Sbjct: 282 ggtggccgcggcctcctcgggctcggc 308
to top
>gb|AE007287.1| Sinorhizobium meliloti 1021 plasmid pSymA section 93 of 121 of the
            complete plasmid sequence
          Length = 11403

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 160  cggcgtgctcgggctcggc 178
            |||||||||||||||||||
Sbjct: 5939 cggcgtgctcgggctcggc 5957
to top
>gb|BC088078.1| Xenopus tropicalis cell death-inducing DNA fragmentation factor,
           alpha subunit-like effector B, mRNA (cDNA clone
           MGC:108435 IMAGE:7024931), complete cds
          Length = 1137

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 109 gcatggctaacaagttggc 127
           |||||||||||||||||||
Sbjct: 873 gcatggctaacaagttggc 855
to top
>emb|AM085146.1| Magnetospirillum gryphiswaldense magnetosome island
          Length = 130000

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 7     gcgaaagcaacagccagcg 25
             |||||||||||||||||||
Sbjct: 11180 gcgaaagcaacagccagcg 11198
to top
>emb|AL390241.19| Human DNA sequence from clone RP11-343L14 on chromosome 1 Contains the
             3' end of a ribosomal protein L26 (RPL26) pseudogene, a
             eukaryotic translation initiation factor 2 subunit 2 beta
             38kDa (EIF2S2) pseudogene, the 5' end of the TRIM33 gene
             for tripartite motif-containing 33, a  pyruvate kinase
             muscle (PKM2) pseudogene, the BCAS2 gene for breast
             carcinoma amplified sequence 2, the 3' end of the gene for
             a novel protein (FLJ37099) and a CpG island, complete
             sequence
          Length = 123501

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 152   ggtggccgcggcgtgctcgggctcggc 178
             |||||||||||| | ||||||||||||
Sbjct: 50698 ggtggccgcggcctcctcgggctcggc 50672
to top
>ref|NM_001011434.1| Xenopus tropicalis cell death-inducing DNA fragmentation factor,
           alpha subunit-like effector B (cideb), mRNA
          Length = 1137

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 109 gcatggctaacaagttggc 127
           |||||||||||||||||||
Sbjct: 873 gcatggctaacaagttggc 855
to top
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29
          Length = 310550

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 134    gctgatcctcgcggtgctg 152
              |||||||||||||||||||
Sbjct: 269892 gctgatcctcgcggtgctg 269910
to top
>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29
          Length = 283100

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 163    cgtgctcgggctcggcggc 181
              |||||||||||||||||||
Sbjct: 204092 cgtgctcgggctcggcggc 204074
to top
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 137     gatcctcgcggtgctggtg 155
               |||||||||||||||||||
Sbjct: 1423138 gatcctcgcggtgctggtg 1423120
to top
>dbj|AB029036.1| Homo sapiens mRNA for KIAA1113 protein, partial cds
          Length = 3424

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 152 ggtggccgcggcgtgctcgggctcggc 178
           |||||||||||| | ||||||||||||
Sbjct: 211 ggtggccgcggcctcctcgggctcggc 237
to top
>tpg|BK002672.1| TPA: TPA_inf: Drosophila melanogaster HDC14493 (HDC14493) gene,
           complete cds
          Length = 2948

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 151 tggtggccgcggcgtgctc 169
           |||||||||||||||||||
Sbjct: 822 tggtggccgcggcgtgctc 804
to top
>gb|AE012549.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 457
            of 460 of the complete genome
          Length = 11227

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 143  cgcggtgctggtggccgcg 161
            |||||||||||||||||||
Sbjct: 2052 cgcggtgctggtggccgcg 2070
to top
>ref|XM_938762.1| PREDICTED: Homo sapiens similar to ring finger protein 183
           (LOC649689), mRNA
          Length = 1116

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 144 gcggtgctggtggccgcgg 162
           |||||||||||||||||||
Sbjct: 613 gcggtgctggtggccgcgg 631
to top
>ref|XM_929820.1| PREDICTED: Homo sapiens similar to ring finger protein 183
           (LOC646862), mRNA
          Length = 1116

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 144 gcggtgctggtggccgcgg 162
           |||||||||||||||||||
Sbjct: 613 gcggtgctggtggccgcgg 631
to top
>gb|AC159000.2| Mus musculus BAC clone RP24-207K16 from chromosome 9, complete
            sequence
          Length = 152872

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 75   cctgatcacagctagccagccac 97
            ||||| |||||||||||||||||
Sbjct: 6224 cctgaacacagctagccagccac 6246
to top
>gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, complete sequence
          Length = 140234

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 143    cgcggtgctggtggccgcggcgtgctc 169
              ||||||||| || ||||||||||||||
Sbjct: 122497 cgcggtgctcgtcgccgcggcgtgctc 122471
to top
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 143     cgcggtgctggtggccgcg 161
               |||||||||||||||||||
Sbjct: 5111471 cgcggtgctggtggccgcg 5111489
to top
>gb|AC009209.6|AC009209 Drosophila melanogaster, chromosome 2R, region 47D-47D, BAC clone
             BACR24G16, complete sequence
          Length = 165974

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 112   tggctaacaagttggcgtccctg 134
             |||||||||||||||| ||||||
Sbjct: 20425 tggctaacaagttggcttccctg 20447
to top
>gb|AF220137.1|AF220137 Homo sapiens tripartite motif protein TRIM33 beta mRNA, complete
           cds; alternatively spliced
          Length = 3458

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 152 ggtggccgcggcgtgctcgggctcggc 178
           |||||||||||| | ||||||||||||
Sbjct: 282 ggtggccgcggcctcctcgggctcggc 308
to top
>gb|AF220136.1|AF220136 Homo sapiens tripartite motif protein TRIM33 alpha (TRIM33) mRNA,
           complete cds; alternatively spliced
          Length = 3509

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 152 ggtggccgcggcgtgctcgggctcggc 178
           |||||||||||| | ||||||||||||
Sbjct: 282 ggtggccgcggcctcctcgggctcggc 308
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 167      ctcgggctcggcggcgcgc 185
                |||||||||||||||||||
Sbjct: 11426542 ctcgggctcggcggcgcgc 11426560
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                          
Query: 143     cgcggtgctggtggccgcggcgtgctc 169
               ||||||||| || ||||||||||||||
Sbjct: 2743980 cgcggtgctcgtcgccgcggcgtgctc 2744006
to top
>gb|AC008260.5|AC008260 Drosophila melanogaster, chromosome 2R, region 47B-47C, BAC clone
              BACR13J10, complete sequence
          Length = 140940

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 112    tggctaacaagttggcgtccctg 134
              |||||||||||||||| ||||||
Sbjct: 137043 tggctaacaagttggcttccctg 137065
to top
>gb|AC008192.8|AC008192 Drosophila melanogaster, chromosome 3R, region 92A-92A, BAC clone
              BACR12P10, complete sequence
          Length = 186686

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 151    tggtggccgcggcgtgctc 169
              |||||||||||||||||||
Sbjct: 119670 tggtggccgcggcgtgctc 119652
to top
>gb|AC007471.4|AC007471 Drosophila melanogaster, chromosome 2R, region 44F-45A, BAC clone
             BACR02C23, complete sequence
          Length = 168601

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 9     gaaagcaacagccagcgatcgag 31
             |||||||||||||||||| ||||
Sbjct: 17461 gaaagcaacagccagcgagcgag 17439
to top
>gb|AC012313.7| Homo sapiens chromosome 19 clone CTD-2619J13, complete sequence
          Length = 185417

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 144   gcggtgctggtggccgcgg 162
             |||||||||||||||||||
Sbjct: 54909 gcggtgctggtggccgcgg 54927
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 144     gcggtgctggtggccgcgg 162
               |||||||||||||||||||
Sbjct: 2509920 gcggtgctggtggccgcgg 2509938



 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 130     ccctgctgatcctcgcggt 148
               |||||||||||||||||||
Sbjct: 2317112 ccctgctgatcctcgcggt 2317094
to top
>dbj|AP006164.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1386G10
          Length = 121827

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 167    ctcgggctcggcggcgcgc 185
              |||||||||||||||||||
Sbjct: 114251 ctcgggctcggcggcgcgc 114269
to top
>gb|AE005122.1| Halobacterium sp. NRC-1 section 153 of 170 of the complete genome
          Length = 10655

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 167   ctcgggctcggcggcgcgc 185
             |||||||||||||||||||
Sbjct: 10302 ctcgggctcggcggcgcgc 10284
to top
>dbj|AK111047.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-C01, full
           insert sequence
          Length = 668

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 143 cgcggtgctggtggccgcggcgtgctc 169
           ||||||||| || ||||||||||||||
Sbjct: 60  cgcggtgctcgtcgccgcggcgtgctc 86
to top
>gb|U03114.2|SAU03114 Streptomyces albus lipase precursor (lip) and LipR genes, complete
            cds; and unknown gene
          Length = 4855

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 144  gcggtgctggtggccgcgg 162
            |||||||||||||||||||
Sbjct: 2479 gcggtgctggtggccgcgg 2497
to top
>gb|AE003726.3| Drosophila melanogaster chromosome 3R, section 64 of 118 of the complete
              sequence
          Length = 247876

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 151    tggtggccgcggcgtgctc 169
              |||||||||||||||||||
Sbjct: 177829 tggtggccgcggcgtgctc 177811
to top
>gb|AE003835.4| Drosophila melanogaster chromosome 2R, section 15 of 73 of the complete
             sequence
          Length = 271696

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 9     gaaagcaacagccagcgatcgag 31
             |||||||||||||||||| ||||
Sbjct: 30581 gaaagcaacagccagcgagcgag 30559
to top
>gb|AE003827.3| Drosophila melanogaster chromosome 2R, section 23 of 73 of the complete
             sequence
          Length = 256227

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 112   tggctaacaagttggcgtccctg 134
             |||||||||||||||| ||||||
Sbjct: 40146 tggctaacaagttggcttccctg 40168
to top
>gb|AF119043.1|AF119043 Homo sapiens transcriptional intermediary factor 1 gamma mRNA,
           complete cds
          Length = 3510

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 152 ggtggccgcggcgtgctcgggctcggc 178
           |||||||||||| | ||||||||||||
Sbjct: 282 ggtggccgcggcctcctcgggctcggc 308
to top
>gb|AC005860.1|AC005860 Drosophila melanogaster DNA sequence (P1s DS04504 (D346) and DS00068
             (D348)), complete sequence
          Length = 83099

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 112   tggctaacaagttggcgtccctg 134
             |||||||||||||||| ||||||
Sbjct: 41253 tggctaacaagttggcttccctg 41275
to top
>emb|CR974473.23| Mouse DNA sequence from clone RP23-38P5 on chromosome 17, complete
              sequence
          Length = 219471

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 1      accacagcgaaagcaacagccag 23
              ||||||||||| |||||||||||
Sbjct: 147936 accacagcgaatgcaacagccag 147958
to top
>gb|AY875639.1| Drosophila melanogaster Dp205 mRNA, complete cds
          Length = 5862

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 151  tggtggccgcggcgtgctc 169
            |||||||||||||||||||
Sbjct: 1119 tggtggccgcggcgtgctc 1101
to top
>gb|AC165257.2| Mus musculus BAC clone RP23-162D3 from chromosome 9, complete sequence
          Length = 181162

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 75     cctgatcacagctagccagccac 97
              ||||| |||||||||||||||||
Sbjct: 154051 cctgaacacagctagccagccac 154073


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,095,386
Number of Sequences: 3902068
Number of extensions: 1095386
Number of successful extensions: 81431
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76950
Number of HSP's gapped (non-prelim): 4480
length of query: 188
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 166
effective length of database: 17,147,199,772
effective search space: 2846435162152
effective search space used: 2846435162152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top