Clone Information

BLAST Search Result

Clone Name	baet37f03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ADA2C_HUMAN (P18825) Alpha-2C adrenergic receptor (Alpha-2C adre...	33	0.13
2	HUNB_MANSE (Q25514) Protein hunchback (Fragment)	33	0.21
3	LCP2_MOUSE (Q60787) Lymphocyte cytosolic protein 2 (SH2 domain-c...	32	0.36
4	BLI1_CAEEL (Q09457) Cuticle collagen bli-1 (Blistered cuticle pr...	30	1.4
5	HSP1_TACAC (P35311) Sperm protamine P1	30	1.4
6	POLS_HUMAN (Q5XG87) DNA polymerase sigma (EC 2.7.7.7) (Topoisome...	30	1.4
7	FL1_EUCGL (O64953) Leafy/floricaula homolog FL1 (ELF1)	30	1.8
8	BCS1_BRARE (Q7ZV60) Mitochondrial chaperone BCS1 (BCS1-like prot...	30	1.8
9	VE2_HPV22 (P50768) Regulatory protein E2	29	2.4
10	FOXL2_HUMAN (P58012) Forkhead box protein L2	29	2.4
11	CDAN1_HUMAN (Q8IWY9) Codanin-1	29	2.4
12	AP1G2_MOUSE (O88512) AP-1 complex subunit gamma-2 (Adapter-relat...	29	2.4
13	SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dep...	29	3.1
14	MKRN3_MOUSE (Q60764) Makorin-3 (Zinc finger protein 127)	29	3.1
15	RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats pro...	29	3.1
16	PININ_PONPY (Q5R5X0) Pinin	29	3.1
17	PININ_HUMAN (Q9H307) Pinin (140 kDa nuclear and cell adhesion-re...	29	3.1
18	PININ_BOVIN (P79122) Pinin	29	3.1
19	RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats prote...	29	3.1
20	PININ_CANFA (P79149) Pinin	29	3.1
21	GCVK_HCMVA (P16788) Phosphotransferase UL97 (EC 2.7.1.-) (Gancic...	29	3.1
22	PININ_MOUSE (O35691) Pinin	29	3.1
23	POLS_MOUSE (Q6PB75) DNA polymerase sigma (EC 2.7.7.7)	29	3.1
24	VE2_HPV08 (P06422) Regulatory protein E2	28	4.0
25	TATB_XYLFT (Q87B79) Sec-independent protein translocase protein ...	28	4.0
26	RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats pro...	28	4.0
27	GCVK_HCMVT (Q68101) Phosphotransferase UL97 (EC 2.7.1.-) (Gancic...	28	4.0
28	SEM6B_RAT (O70141) Semaphorin-6B precursor (Semaphorin Z) (Sema Z)	28	4.0
29	CHEB3_RHOSH (O33558) Chemotaxis response regulator protein-gluta...	28	4.0
30	CHEB1_RHOS4 (Q3J653) Chemotaxis response regulator protein-gluta...	28	4.0
31	SGG_DROME (P18431) Protein kinase shaggy (EC 2.7.11.1) (Protein ...	28	4.0
32	AKIB1_HUMAN (Q9P2G1) Ankyrin repeat and IBR domain-containing pr...	28	4.0
33	LCP2_HUMAN (Q13094) Lymphocyte cytosolic protein 2 (SH2 domain-c...	28	5.3
34	DPO1_THEAQ (P19821) DNA polymerase I, thermostable (EC 2.7.7.7) ...	28	5.3
35	PP1RA_RAT (O55000) Serine/threonine-protein phosphatase 1 regula...	28	5.3
36	PP1RA_MOUSE (Q80W00) Serine/threonine-protein phosphatase 1 regu...	28	5.3
37	BCS1_MOUSE (Q9CZP5) Mitochondrial chaperone BCS1 (BCS1-like prot...	28	5.3
38	YPH2_CHRVI (P45372) Hypothetical 40.5 kDa protein in phbC-phbA i...	28	6.9
39	DR111_ARATH (P42698) DNA-damage-repair/toleration protein DRT111...	28	6.9
40	DHAS_BORPE (P41399) Aspartate-semialdehyde dehydrogenase (EC 1.2...	28	6.9
41	V70K_TYMV (P10357) 69 kDa protein	28	6.9
42	PTPRT_HUMAN (O14522) Receptor-type tyrosine-protein phosphatase ...	28	6.9
43	Y951_VIBCH (Q9KTF1) UPF0247 protein VC0951	28	6.9
44	Y907_VIBVY (Q7MN10) UPF0247 protein VV0907	28	6.9
45	Y277_VIBVU (Q8DFD8) UPF0247 protein VV1_0277	28	6.9
46	RS5_ZYMMO (Q5NQ48) 30S ribosomal protein S5	27	9.0
47	VGLD_PRVRI (P07645) Protein gp50	27	9.0
48	IRS2_HUMAN (Q9Y4H2) Insulin receptor substrate 2 (IRS-2)	27	9.0
49	ENV_MCFF3 (P03388) Env polyprotein precursor (Coat polyprotein) ...	27	9.0
50	RSRC1_HUMAN (Q96IZ7) Arginine/serine-rich coiled coil protein 1	27	9.0
51	SMF_HUMAN (Q12766) SMF protein (Fragment)	27	9.0
52	SLY1_ARATH (Q9SL48) SEC1-family transport protein SLY1 (AtSLY1)	27	9.0
53	BCS1_HUMAN (Q9Y276) Mitochondrial chaperone BCS1 (BCS1-like prot...	27	9.0
54	YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'regio...	27	9.0
55	PRELP_BOVIN (Q9GKN8) Prolargin precursor (Proline-arginine-rich ...	27	9.0
56	V70K_TYMVC (P28478) 69 kDa protein	27	9.0
57	U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 aux...	27	9.0
58	IRS2_MOUSE (P81122) Insulin receptor substrate 2 (IRS-2) (4PS)	27	9.0
59	PTPRT_MOUSE (Q99M80) Receptor-type tyrosine-protein phosphatase ...	27	9.0
60	CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel ...	27	9.0

>ADA2C_HUMAN (P18825) Alpha-2C adrenergic receptor (Alpha-2C adrenoceptor)|
           (Alpha-2C adrenoreceptor) (Alpha-2 adrenergic receptor
           subtype C4)
          Length = 462

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 32/95 (33%), Positives = 36/95 (37%)
 Frame = -3

Query: 293 PDGLSPLEVAGLRARDHEGRRGVCTRRGGSWTEHGAPRRRRVRPGEVSLSETKLTARRRG 114
           PDG SP    GL A    G  G C           AP      P +V   E+   A RR 
Sbjct: 253 PDGASPTTENGLGAAAGAGENGHC-----------APP-----PADVEPDESSAAAERRR 296

Query: 113 RREADVMRRGGRDVEKRVAVLRGPGSIGRQRTNGG 9
           RR A  +RRGGR   +R     G G    Q    G
Sbjct: 297 RRGA--LRRGGR---RRAGAEGGAGGADGQGAGPG 326

to top

>HUNB_MANSE (Q25514) Protein hunchback (Fragment)|
          Length = 327

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 9   PTVRPLPANRPRPTEHRHALLDVPSSSSHHVRLPPPSSSR 128
           P++   P +R  PTEH    LD+ ++ +     PPP + R
Sbjct: 198 PSITQTPTHREMPTEHGDDALDLTNAKTSEAGTPPPPTER 237

to top

>LCP2_MOUSE (Q60787) Lymphocyte cytosolic protein 2 (SH2 domain-containing|
           leucocyte protein of 76 kDa) (SLP-76 tyrosine
           phosphoprotein) (SLP76)
          Length = 533

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
 Frame = +3

Query: 9   PTVRPLPANRPRPTEHRHALLDVP---------SSSSHHVRLPPPSSSRGELRLTQTDLA 161
           P +RP PA  P PT   H+ L  P         S ++   +LP PS  R     T+  L 
Sbjct: 189 PPLRPKPALPPLPTGRNHSPLSPPHPNHEEPSRSGNNKTAKLPAPSIDRS----TKPPLD 244

Query: 162 RAHAPASR 185
           R+ AP  R
Sbjct: 245 RSLAPLDR 252

to top

>BLI1_CAEEL (Q09457) Cuticle collagen bli-1 (Blistered cuticle protein 1)|
          Length = 963

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 15  VRPLPANRPRPTEHRHALLDVPSSSSHHVRLPPPSSSRGELRLTQTDLARAHAPASRR 188
           VR  P  RP P  HR    ++      +VR PPP  +RG   + ++      AP  R+
Sbjct: 655 VREPPPKRP-PPPHRQTPHELYPEEQPYVRRPPPPQNRGNYEVERSREYVPEAPRPRQ 711

to top

>HSP1_TACAC (P35311) Sperm protamine P1|
          Length = 68

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 23/56 (41%), Positives = 26/56 (46%)
 Frame = -3

Query: 173 RVRPGEVSLSETKLTARRRGRREADVMRRGGRDVEKRVAVLRGPGSIGRQRTNGGR 6
           R RP   S S +    RRR RR+    RRGGR    R    RG G  G+ R   GR
Sbjct: 2   RFRPSR-SRSRSLYRRRRRSRRQRS--RRGGRQTGPRKITRRGRGR-GKSRRRRGR 53

to top

>POLS_HUMAN (Q5XG87) DNA polymerase sigma (EC 2.7.7.7) (Topoisomerase-related|
           function protein 4-1) (TRF4-1) (LAK-1) (DNA polymerase
           kappa)
          Length = 542

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 3   GSPTVRPLPANRPRPTEHRHALLDVPSSSSHHVRLPPPS 119
           G PT  P+P+ +P+PT  R   L + +++     +PPP+
Sbjct: 396 GLPTALPMPSGKPQPTTSR--TLIMTTNNQTRFTIPPPT 432

to top

>FL1_EUCGL (O64953) Leafy/floricaula homolog FL1 (ELF1)|
          Length = 359

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 23/96 (23%), Positives = 35/96 (36%)
 Frame = -3

Query: 299 LRPDGLSPLEVAGLRARDHEGRRGVCTRRGGSWTEHGAPRRRRVRPGEVSLSETKLTARR 120
           L   GLS  +V     +D  GR G     G SW      ++ R R    ++         
Sbjct: 107 LSHQGLSEEQVVQHSEKDQLGRAGSGDTAGTSWGAQQQRKKHRHRHHITAMKGAATEEDE 166

Query: 119 RGRREADVMRRGGRDVEKRVAVLRGPGSIGRQRTNG 12
               E + MRR      +   ++  PG + R + NG
Sbjct: 167 EDEEEVEEMRR----QREHPFIVTEPGEVARGKKNG 198

to top

>BCS1_BRARE (Q7ZV60) Mitochondrial chaperone BCS1 (BCS1-like protein)|
          Length = 420

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -3

Query: 272 EVAGLRARDHEGRRGVCTRRGGSWTEHGAPRRRR 171
           E   L  +  EGR  + T  G  W   G PRRRR
Sbjct: 153 EARELALKQEEGRTVMYTAMGAEWRPFGFPRRRR 186

to top

>VE2_HPV22 (P50768) Regulatory protein E2|
          Length = 436

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 29/80 (36%), Positives = 38/80 (47%)
 Frame = -3

Query: 257 RARDHEGRRGVCTRRGGSWTEHGAPRRRRVRPGEVSLSETKLTARRRGRREADVMRRGGR 78
           R+R  E R G  TRR  S     +PRR   R G   L+ ++  +R R R   D    GG 
Sbjct: 268 RSRSTEQRGGRATRRSLSRESAESPRRGG-RGGGGPLTRSRSRSRSRTRESVD---GGGV 323

Query: 77  DVEKRVAVLRGPGSIGRQRT 18
             ++  A LR   SIGRQ +
Sbjct: 324 APDEVGATLR---SIGRQHS 340

to top

>FOXL2_HUMAN (P58012) Forkhead box protein L2|
          Length = 376

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 21/67 (31%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
 Frame = +3

Query: 3   GSPTVRPLPANRPRPTEHRH----ALLDVPSSSSHHVRLPPPSSSRGELRLTQTDLARAH 170
           G P   P P   P P  H H    A    P+   H    PPP    G+L       A   
Sbjct: 278 GGPPAAPPPPPHPHPHPHAHHLHAAAAPPPAPPHHGAAAPPP----GQLSPASPATAAPP 333

Query: 171 APASRRA 191
           APA   A
Sbjct: 334 APAPTSA 340

to top

>CDAN1_HUMAN (Q8IWY9) Codanin-1|
          Length = 1226

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 128 ARRRGRREAD--VMRRGGRDVEKRVAVLRGPGSIGRQRTNGGRP 3
           ARR GRR        RGGR +E+ V+    PG+ GR+    G P
Sbjct: 116 ARRGGRRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSP 159

to top

>AP1G2_MOUSE (O88512) AP-1 complex subunit gamma-2 (Adapter-related protein|
           complex 1 gamma-2 subunit) (Gamma2-adaptin) (Adaptor
           protein complex AP-1 gamma-2 subunit) (G2ad)
          Length = 791

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
 Frame = +3

Query: 18  RPLPANRPRPTEHRHA----LLDV------PSSSSHHVRLPPPSSSRGELRLTQTDL 158
           +PL    P PTE +      LLD+      P SS H   LPP + S GE  +   DL
Sbjct: 607 QPLEVTAPAPTEPQATKLLDLLDLLGDTSEPLSSGHAQHLPPQTPSPGEALIHLLDL 663

to top

>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily C member 2 (SWI/SNF
           complex 170 kDa subunit) (BRG1-associated factor 170)
          Length = 1213

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/42 (40%), Positives = 18/42 (42%)
 Frame = +3

Query: 18  RPLPANRPRPTEHRHALLDVPSSSSHHVRLPPPSSSRGELRL 143
           RP P   P PT H H L D PS        PP  SS  +  L
Sbjct: 519 RPTPMGPP-PTSHFHVLADTPSGLVPLQPKPPQQSSASQQML 559

to top

>MKRN3_MOUSE (Q60764) Makorin-3 (Zinc finger protein 127)|
          Length = 544

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
 Frame = -3

Query: 287 GLSPLEV---------AGLRARDHEG--RRGVCTRRGGSWTEHGAPR---RRRVRPGEVS 150
           GL+PL V         A LR    EG   R    R  GSWT+    R     + + G+  
Sbjct: 53  GLAPLLVTPGPAIRRAASLRPAPAEGGGARSGPERNSGSWTKQILCRYYLHGQCKEGDNC 112

Query: 149 LSETKLTARRRGRREADVMRRGGRDVEKRVAVLRGP 42
                L+ RRR R        GG+D + R +  RGP
Sbjct: 113 RYSHDLSGRRRSR--------GGQDAQPRASADRGP 140

to top

>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-like protein) (Atrophin-1-related protein)
          Length = 1566

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 9    PTVRPLPANRPRPTEHRHAL-LDVPSSSSHHVRLPPPSSSRGELRLTQTDLARAHAP 176
            P   P+P   P P  H+H   L  PS  S +  LPPP + +    L+      AH P
Sbjct: 931  PPTTPIP-QLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPP 986

to top

>PININ_PONPY (Q5R5X0) Pinin|
          Length = 719

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
 Frame = -3

Query: 287 GLSPLEVAGLRAR--------DHEGRRGVCTRRGGSWTEHGAPRRRRVRPGEVSLSETKL 132
           G  P +V  ++AR           GR  +  RRG S +  G P ++R   G VS    + 
Sbjct: 31  GRDPNDVRPIQARLLALSGPGGGRGRGSLLLRRGFSDSGGGPPAKQRDLEGAVSRLGGER 90

Query: 131 TARRRGRREAD 99
             RR  R+E+D
Sbjct: 91  RTRRESRQESD 101

to top

>PININ_HUMAN (Q9H307) Pinin (140 kDa nuclear and cell adhesion-related|
           phosphoprotein) (Domain-rich serine protein)
           (DRS-protein) (DRSP) (Melanoma metastasis clone A
           protein) (Desmosome-associated protein) (SR-like
           protein) (Nuclear protein SDK3)
          Length = 717

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
 Frame = -3

Query: 287 GLSPLEVAGLRAR--------DHEGRRGVCTRRGGSWTEHGAPRRRRVRPGEVSLSETKL 132
           G  P +V  ++AR           GR  +  RRG S +  G P ++R   G VS    + 
Sbjct: 31  GRDPNDVRPIQARLLALSGPGGGRGRGSLLLRRGFSDSGGGPPAKQRDLEGAVSRLGGER 90

Query: 131 TARRRGRREAD 99
             RR  R+E+D
Sbjct: 91  RTRRESRQESD 101

to top

>PININ_BOVIN (P79122) Pinin|
          Length = 703

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
 Frame = -3

Query: 287 GLSPLEVAGLRAR--------DHEGRRGVCTRRGGSWTEHGAPRRRRVRPGEVSLSETKL 132
           G  P +V  ++AR           GR  +  RRG S +  G P ++R   G VS    + 
Sbjct: 31  GRDPNDVRPIQARLLALSGPGGGRGRGSLLLRRGFSDSGGGPPAKQRDLEGAVSRLGGER 90

Query: 131 TARRRGRREAD 99
             RR  R+E+D
Sbjct: 91  RTRRESRQESD 101

to top

>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-related protein)
          Length = 1559

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 9    PTVRPLPANRPRPTEHRHAL-LDVPSSSSHHVRLPPPSSSRGELRLTQTDLARAHAP 176
            P   P+P   P P  H+H   L  PS  S +  LPPP + +    L+      AH P
Sbjct: 922  PPTTPIP-QLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPP 977

to top

>PININ_CANFA (P79149) Pinin|
          Length = 773

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
 Frame = -3

Query: 287 GLSPLEVAGLRAR--------DHEGRRGVCTRRGGSWTEHGAPRRRRVRPGEVSLSETKL 132
           G  P +V  ++AR           GR  +  RRG S +  G P ++R   G VS    + 
Sbjct: 31  GRDPNDVRPIQARLLALSGPGGGRGRGSLLLRRGFSDSGGGPPAKQRDLEGAVSRLGGER 90

Query: 131 TARRRGRREAD 99
             RR  R+E+D
Sbjct: 91  RTRRESRQESD 101

to top

>GCVK_HCMVA (P16788) Phosphotransferase UL97 (EC 2.7.1.-) (Ganciclovir kinase)|
           (HSRF3 protein)
          Length = 707

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -3

Query: 182 RRRRVRPGEVSLSETKLTARRRGRREADVMRRGGRDVEKRV-----AVLRGPGSI 33
           R+R +RP  VSL+ T L  RR G  +A +      DVE R      AV  GPG I
Sbjct: 193 RKRPLRPPLVSLARTPLCRRRVGGVDAVLEE---NDVELRAESQDSAVASGPGRI 244

to top

>PININ_MOUSE (O35691) Pinin|
          Length = 725

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
 Frame = -3

Query: 287 GLSPLEVAGLRAR--------DHEGRRGVCTRRGGSWTEHGAPRRRRVRPGEVSLSETKL 132
           G  P +V  ++AR           GR  +  RRG S +  G P ++R   G VS    + 
Sbjct: 31  GRDPNDVRPIQARLLALSGPGGGRGRGSLLLRRGFSDSGGGPPAKQRDLEGAVSRLGGER 90

Query: 131 TARRRGRREAD 99
             RR  R+E+D
Sbjct: 91  RTRRESRQESD 101

to top

>POLS_MOUSE (Q6PB75) DNA polymerase sigma (EC 2.7.7.7)|
          Length = 542

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 9   PTVRPLPANRPRPTEHRHALLDVPSSSSHHVRLPPPS 119
           PT  P+P+++P+P   R   L + +++   V +PPP+
Sbjct: 398 PTALPMPSSKPQPAASR--TLIMTTNNQTRVTIPPPT 432

to top

>VE2_HPV08 (P06422) Regulatory protein E2|
          Length = 498

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = -3

Query: 260 LRARDHEGRRGVCTRRGGSWTEHGAPRRRRVRPGEVSLSETKLTARRRGRREADVMRRGG 81
           +R R     RG  T         G+PRRRR      S +  K + R  GRR      RG 
Sbjct: 301 VRPRSRSRSRGRATATSRRRAGRGSPRRRRSTSRSPSTNTFKRSQRGGGRRGRGRGSRGR 360

Query: 80  RD 75
           R+
Sbjct: 361 RE 362

to top

>TATB_XYLFT (Q87B79) Sec-independent protein translocase protein tatB homolog|
          Length = 138

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 78  PSSSSHHVRLPPPSSS 125
           PS++ HHV +PPPS+S
Sbjct: 112 PSTAVHHVHVPPPSTS 127

to top

>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-2)
          Length = 1558

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 9    PTVRPLPANRPRPTEHRHAL-LDVPSSSSHHVRLPPPSSSRGELRLTQTDLARAHAP 176
            P   P+P   P P  H+H   L  PS  S +  LPPP + +    L+      AH P
Sbjct: 923  PPTTPIP-QLPAPQAHKHPPHLSGPSPFSLNANLPPPPALKPLSSLSTHHPPSAHPP 978

to top

>GCVK_HCMVT (Q68101) Phosphotransferase UL97 (EC 2.7.1.-) (Ganciclovir kinase)|
          Length = 707

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -3

Query: 182 RRRRVRPGEVSLSETKLTARRRGRREADVMRRGGRDVEKRV-----AVLRGPGSI 33
           R+R +RP  VSL+ T L  RR G  +A +      DVE R      AV  GPG +
Sbjct: 193 RKRPLRPPLVSLARTPLCRRRVGGVDAVLEE---NDVELRAESQDSAVASGPGRV 244

to top

>SEM6B_RAT (O70141) Semaphorin-6B precursor (Semaphorin Z) (Sema Z)|
          Length = 887

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
 Frame = +3

Query: 9   PTVRP-LPANRPRPTEHRHALLDVPSSSS----HHVRLPP----PSSSRGELRLTQTDLA 161
           PT  P   A  PR  +H HALL   +S+S     H R P     P+ S  E RL      
Sbjct: 722 PTTHPHAHALGPRAWDHSHALLSASASTSLLLLAHTRAPEQPPVPTESGPESRLCAPRSC 781

Query: 162 RAHAP 176
           RA  P
Sbjct: 782 RASHP 786

to top

>CHEB3_RHOSH (O33558) Chemotaxis response regulator protein-glutamate|
           methylesterase of group 3 operon (EC 3.1.1.61)
          Length = 369

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 28  RPIDPGPRSTATRFSTSRPPR 90
           RP+ PGP+ TA     +RPPR
Sbjct: 149 RPLAPGPKLTADEILPARPPR 169

to top

>CHEB1_RHOS4 (Q3J653) Chemotaxis response regulator protein-glutamate|
           methylesterase 1 (EC 3.1.1.61)
          Length = 369

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 28  RPIDPGPRSTATRFSTSRPPR 90
           RP+ PGP+ TA     +RPPR
Sbjct: 149 RPLAPGPKLTADEILPARPPR 169

to top

>SGG_DROME (P18431) Protein kinase shaggy (EC 2.7.11.1) (Protein zeste-white|
           3)
          Length = 1067

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 75  VPSSSSHHVRLPPPSSSRGELRLTQ 149
           V S+S   ++LPPP SS G L L Q
Sbjct: 78  VSSASQQQLQLPPPRSSSGSLSLPQ 102

to top

>AKIB1_HUMAN (Q9P2G1) Ankyrin repeat and IBR domain-containing protein 1|
            (Fragment)
          Length = 1214

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 15   VRPLPANRPRPTEHRHALLDVPSSSSHHVRLPPPSSSRGELRLTQTDLARAHAPASR 185
            V  L +N P P E   + LD+P   S   R      S   + +  +   R + PASR
Sbjct: 905  VHSLLSNPPDPDEPSESTLDIPEGGSSSRRPGTSVVSSASMSVLHSSSLRDYTPASR 961

to top

>LCP2_HUMAN (Q13094) Lymphocyte cytosolic protein 2 (SH2 domain-containing|
           leucocyte protein of 76 kDa) (SLP-76 tyrosine
           phosphoprotein) (SLP76)
          Length = 533

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
 Frame = +3

Query: 9   PTVRPLPANRPRPTEHRHALL-------DVPSSSSHH--VRLPPPSSSRGELRLTQTDLA 161
           P  RP+ A  P P    H+ L       + PS S +H   +LP PS  R     T+  L 
Sbjct: 189 PPQRPMAALPPPPAGRNHSPLPPPQTNHEEPSRSRNHKTAKLPAPSIDRS----TKPPLD 244

Query: 162 RAHAPASR 185
           R+ AP  R
Sbjct: 245 RSLAPFDR 252

to top

>DPO1_THEAQ (P19821) DNA polymerase I, thermostable (EC 2.7.7.7) (Taq|
           polymerase 1)
          Length = 832

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 22/65 (33%), Positives = 28/65 (43%)
 Frame = -3

Query: 293 PDGLSPLEVAGLRARDHEGRRGVCTRRGGSWTEHGAPRRRRVRPGEVSLSETKLTARRRG 114
           P G  P+ +A L    +    GV  R GG WTE    R         +LSE +L A   G
Sbjct: 368 PPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGER--------AALSE-RLFANLWG 418

Query: 113 RREAD 99
           R E +
Sbjct: 419 RLEGE 423

to top

>PP1RA_RAT (O55000) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (Phosphatase 1 nuclear targeting subunit) (PNUTS
           protein) (MHC class I region proline-rich protein CAT53)
          Length = 872

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +3

Query: 54  HRHALLDVPSSSSHHVRLPPPSSSRG 131
           H H   DVPS   H  R PPP   RG
Sbjct: 791 HGHRPHDVPSHRGHDHRGPPPHEHRG 816

to top

>PP1RA_MOUSE (Q80W00) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (MHC class I region proline-rich protein CAT53)
          Length = 888

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +3

Query: 54  HRHALLDVPSSSSHHVRLPPPSSSRG 131
           H H   DVPS   H  R PPP   RG
Sbjct: 807 HGHRPHDVPSHRGHDHRGPPPHEHRG 832

to top

>BCS1_MOUSE (Q9CZP5) Mitochondrial chaperone BCS1 (BCS1-like protein)|
          Length = 418

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 272 EVAGLRARDHEGRRGVCTRRGGSWTEHGAPRRRR 171
           E   L  +  EG+  + T  G  W   G PRRRR
Sbjct: 153 EARALALQQEEGKTVMYTAVGSEWRTFGYPRRRR 186

to top

>YPH2_CHRVI (P45372) Hypothetical 40.5 kDa protein in phbC-phbA intergenic|
           region (ORF2)
          Length = 357

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -3

Query: 185 PRRRRVRPGEVSLSETKLTARRRGRREADVMRRGGRDVEKRVAVLRG 45
           P R  +R  +  L ET        RRE   +R   RD+E+RVA L G
Sbjct: 286 PTRSELRTLQDRLQET--------RRENKALRHSLRDLERRVAALAG 324

to top

>DR111_ARATH (P42698) DNA-damage-repair/toleration protein DRT111, chloroplast|
           precursor
          Length = 387

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +3

Query: 9   PTVRPLPANRPRPTEHRHALLDVPSSSSHHVRLPPPSSSRGELRLTQTDLARAHAPA 179
           PT+R  PA  P  T  R      P  S+ + + PPPS+S   + +   + A +H PA
Sbjct: 35  PTLRKPPAFAPPQTILRPLNKPKPIVSAPY-KPPPPSNSSQSVLIPANESAPSHQPA 90

to top

>DHAS_BORPE (P41399) Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (ASA|
           dehydrogenase) (ASADH)
          Length = 376

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 91  DEEDGTSRSAWRCSVGRGRLAGRGRTVGDP 2
           D  DG SR  W+      ++ GRG   G P
Sbjct: 234 DLGDGMSREEWKAEAETNKILGRGAAFGTP 263

to top

>V70K_TYMV (P10357) 69 kDa protein|
          Length = 628

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 22/61 (36%), Positives = 24/61 (39%)
 Frame = +1

Query: 28  RPIDPGPRSTATRFSTSRPPRLITSASLLPLLRAVSFVSLKLTSPGRTRRRRGAPCSVQE 207
           RPI PGP +T      S  PR      LLP  R     S     P  T R  G P  +Q 
Sbjct: 257 RPITPGPSNTHDLRPLSVLPRTSPRRGLLPNPRR-HRTSTGHIPPTTTSRPTGPPSRLQR 315

Query: 208 P 210
           P
Sbjct: 316 P 316

to top

>PTPRT_HUMAN (O14522) Receptor-type tyrosine-protein phosphatase T precursor (EC|
           3.1.3.48) (R-PTP-T) (RPTP-rho)
          Length = 1463

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = -3

Query: 212 GGSWTEHGAPRRRRVRPGEVSLSETKLTARRRGRREADVMRRGGRDVEKRVAVLRGPGSI 33
           GG W++H     ++    + +L  T++   RR      V     R V K   V+R  G  
Sbjct: 216 GGKWSQHDKLWLQQWNGRDTALMVTRVVNHRRFSATVSVADTAQRSVSKYRCVIRSDGGS 275

Query: 32  G 30
           G
Sbjct: 276 G 276

to top

>Y951_VIBCH (Q9KTF1) UPF0247 protein VC0951|
          Length = 156

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -3

Query: 203 WTEHGAPRRRRVRPGEVSLSETKLTARRRGRREADVMRRGGRDVEKRVAVL 51
           W E G    RR  P ++ L   ++TA +RG + AD+ R   ++ E  +A +
Sbjct: 15  WVEEGFQEYRRRFPHDMPLELVEITAGKRG-KNADIARILQKEGEAMLAAV 64

to top

>Y907_VIBVY (Q7MN10) UPF0247 protein VV0907|
          Length = 156

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -3

Query: 203 WTEHGAPRRRRVRPGEVSLSETKLTARRRGRREADVMRRGGRDVEKRVAVL 51
           W E G    RR  P ++ L   ++TA +RG + AD+ R   ++ E  +A +
Sbjct: 15  WVEEGFQEYRRRFPHDMPLELIEITAGKRG-KNADIARILQKEGEAMLAAI 64

to top

>Y277_VIBVU (Q8DFD8) UPF0247 protein VV1_0277|
          Length = 156

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -3

Query: 203 WTEHGAPRRRRVRPGEVSLSETKLTARRRGRREADVMRRGGRDVEKRVAVL 51
           W E G    RR  P ++ L   ++TA +RG + AD+ R   ++ E  +A +
Sbjct: 15  WVEEGFQEYRRRFPHDMPLELIEITAGKRG-KNADIARILQKEGEAMLAAI 64

to top

>RS5_ZYMMO (Q5NQ48) 30S ribosomal protein S5|
          Length = 233

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 137 KLTARRRGRREADVMRRGGRDVEKRVA 57
           K  A+RRG+R AD+  RGG    K  A
Sbjct: 200 KAVAQRRGKRIADLFGRGGASAAKAEA 226

to top

>VGLD_PRVRI (P07645) Protein gp50|
          Length = 402

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 3   GSPTVRPLPANRPRPTEHRHALLDVPSSSSHHVRLPPPSS 122
           GSP  RP P  RPRP          P++ +   RLP P++
Sbjct: 265 GSPRPRPRPRPRPRPKPE-----PAPATPAPPDRLPEPAT 299

to top

>IRS2_HUMAN (Q9Y4H2) Insulin receptor substrate 2 (IRS-2)|
          Length = 1338

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 69  LDVPSSSSHHVRLPPPSSSRGELRLTQTDLARAHAPASR 185
           + VP +  HH  +  P S  G +R ++TD   A  PA++
Sbjct: 317 ISVPGARRHHHLVNLPPSQTGLVRRSRTDSLAATPPAAK 355

to top

>ENV_MCFF3 (P03388) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP70; Spike protein p15E; R protein]
          Length = 640

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
 Frame = +1

Query: 7   LPP-----FVLCRPIDPGPRSTATRFSTSRPP--RLITSASLLPLLRAVSFVSLKLTSPG 165
           LPP      +L RP  P P   A+    + PP  +L T   LL L+   ++ +L LTSP 
Sbjct: 244 LPPSRPVQIMLPRPPQPPPPGAASIVPETAPPSQQLGTGDRLLNLVNG-AYQALNLTSPD 302

Query: 166 RTR 174
           +T+
Sbjct: 303 KTQ 305

to top

>RSRC1_HUMAN (Q96IZ7) Arginine/serine-rich coiled coil protein 1|
          Length = 334

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 182 RRRRVRPG--EVSLSETKLTARRRGRREADVMRRGGRDVEKR 63
           RR R RP     S S  + + RR   R  D  RR GRD EKR
Sbjct: 106 RRSRSRPRLRSHSRSSERSSHRRTRSRSRDRERRKGRDKEKR 147

to top

>SMF_HUMAN (Q12766) SMF protein (Fragment)|
          Length = 1435

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 99  VRLPPPSSSRGELRLTQTDLARAHAPASRRAVF 197
           VR P PSSSR   RL + +    HAP +  A +
Sbjct: 116 VRQPSPSSSRRAKRLRECERRSLHAPPAMDASY 148

to top

>SLY1_ARATH (Q9SL48) SEC1-family transport protein SLY1 (AtSLY1)|
          Length = 627

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -3

Query: 113 RREADVMRRGGRDVEKRVAVLRGPGS 36
           ++E+D+M RGG D  + +A L+G G+
Sbjct: 393 KKESDMMMRGGIDRTELMAALKGKGT 418

to top

>BCS1_HUMAN (Q9Y276) Mitochondrial chaperone BCS1 (BCS1-like protein) (H-BCS1)|
          Length = 419

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 272 EVAGLRARDHEGRRGVCTRRGGSWTEHGAPRRRR 171
           E   L  +  EG+  + T  G  W   G PRRRR
Sbjct: 153 EARELALQQEEGKTVMYTAVGSEWRPFGYPRRRR 186

to top

>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and|
           gyrB (ORF 3)
          Length = 437

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = -3

Query: 251 RDHEGRRGVCTRRGGSWTEHGAPRRRRVRPGEVSLSETKLTARRRGRREA 102
           R H  +R    R  G+   H   RRRRVR  E +L       RRR RR A
Sbjct: 323 RPHSRKR----RDTGAHHRHWRRRRRRVRHREGALPAAHPDDRRRRRRRA 368

to top

>PRELP_BOVIN (Q9GKN8) Prolargin precursor (Proline-arginine-rich end|
           leucine-rich repeat protein)
          Length = 381

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
 Frame = +3

Query: 3   GSPTVRPLPANRPRPTEHRHAL--LDVPSSSSHHVRLPPP 116
           G PT RP P  RPRP            P   +    LPPP
Sbjct: 21  GQPTRRPRPRPRPRPRPRLRPTPSFPQPDEPTEPTDLPPP 60

to top

>V70K_TYMVC (P28478) 69 kDa protein|
          Length = 628

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 22/61 (36%), Positives = 24/61 (39%)
 Frame = +1

Query: 28  RPIDPGPRSTATRFSTSRPPRLITSASLLPLLRAVSFVSLKLTSPGRTRRRRGAPCSVQE 207
           RPI PGP +T      S  PR      LLP  R     S     P  T R  G P  +Q 
Sbjct: 257 RPITPGPSNTHGLRPLSVLPRASPRRGLLPNPRR-HRTSTGHIPPTTTSRPTGPPSRLQR 315

Query: 208 P 210
           P
Sbjct: 316 P 316

to top

>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (U2AF65)
          Length = 488

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
 Frame = -3

Query: 299 LRPDGLSPLEVAGLRARDHEG------RRGVCTRRGGSWTEHGAPRRRRVRPGEVSLSET 138
           ++PD  S L   G   RD +       +R     RG    +    R RR R  + S S  
Sbjct: 32  VKPDVKSDLNGNGEEKRDRDDEDRKKRKRSRSRDRGDRDRKRSRSRDRRDR--DRSRSRE 89

Query: 137 KLTARRRGRREADVMRRGGRDVEKR 63
           +   R R R   D  RRGGRD ++R
Sbjct: 90  RRRDRSRDRNRDD--RRGGRDDDRR 112

to top

>IRS2_MOUSE (P81122) Insulin receptor substrate 2 (IRS-2) (4PS)|
          Length = 1321

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 69  LDVPSSSSHHVRLPPPSSSRGELRLTQTDLARAHAPASR 185
           + VP +  HH  +  P S  G +R ++TD   A  PA++
Sbjct: 314 ISVPGARRHHHLVNLPPSQTGLVRRSRTDSLAATPPAAK 352

to top

>PTPRT_MOUSE (Q99M80) Receptor-type tyrosine-protein phosphatase T precursor (EC|
           3.1.3.48) (R-PTP-T) (RPTP-rho) (mRPTPrho) (RPTPmam4)
          Length = 1454

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/61 (24%), Positives = 25/61 (40%)
 Frame = -3

Query: 212 GGSWTEHGAPRRRRVRPGEVSLSETKLTARRRGRREADVMRRGGRDVEKRVAVLRGPGSI 33
           GG W++H     ++    + +L  T++   RR      V     R + K   V+R  G  
Sbjct: 220 GGKWSQHDKLWLQQWNGRDTALMVTRVVNHRRFSATVSVADTSQRSISKYRCVIRSDGGS 279

Query: 32  G 30
           G
Sbjct: 280 G 280

to top

>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2505

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 21/63 (33%), Positives = 24/63 (38%)
 Frame = -3

Query: 296  RPDGLSPLEVAGLRARDHEGRRGVCTRRGGSWTEHGAPRRRRVRPGEVSLSETKLTARRR 117
            RP    P + A  RAR  EG R      G      G  RRRR R G  +  E       +
Sbjct: 964  RPGEEGPEDKAERRARHREGSRPARGGEGEGEGPDGGERRRRHRHGAPATYEGDARREDK 1023

Query: 116  GRR 108
             RR
Sbjct: 1024 ERR 1026


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,982,302
Number of Sequences: 219361
Number of extensions: 646904
Number of successful extensions: 3153
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 2897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3136
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result