ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet37b10 |
|---|---|
| Clone Library Name | barley_pub |
>DMD_HUMAN (P11532) Dystrophin| Length = 3685 Score = 33.9 bits (76), Expect = 0.24 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Frame = +2 Query: 194 NYDVIDVDNDQEVHCF--PRIVIGSTFHRPMGIDGTRSPGGETVADFKRLLRRAFRLDRV 367 NYD+ CF R+ G H PM T + GE V DF ++L+ FR R Sbjct: 3333 NYDICQ-------SCFFSGRVAKGHKMHYPMVEYCTPTTSGEDVRDFAKVLKNKFRTKRY 3385 Query: 368 VASH 379 A H Sbjct: 3386 FAKH 3389
>DMD_PIG (Q5GN48) Dystrophin| Length = 3674 Score = 33.9 bits (76), Expect = 0.24 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Frame = +2 Query: 194 NYDVIDVDNDQEVHCF--PRIVIGSTFHRPMGIDGTRSPGGETVADFKRLLRRAFRLDRV 367 NYD+ CF R+ G H PM T + GE V DF ++L+ FR R Sbjct: 3322 NYDICQ-------SCFFSGRVAKGHKMHYPMVEYCTPTTSGEDVRDFAKVLKNKFRTKRY 3374 Query: 368 VASH 379 A H Sbjct: 3375 FAKH 3378
>DMD_MOUSE (P11531) Dystrophin| Length = 3678 Score = 33.9 bits (76), Expect = 0.24 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Frame = +2 Query: 194 NYDVIDVDNDQEVHCF--PRIVIGSTFHRPMGIDGTRSPGGETVADFKRLLRRAFRLDRV 367 NYD+ CF R+ G H PM T + GE V DF ++L+ FR R Sbjct: 3326 NYDICQ-------SCFFSGRVAKGHKMHYPMVEYCTPTTSGEDVRDFAKVLKNKFRTKRY 3378 Query: 368 VASH 379 A H Sbjct: 3379 FAKH 3382
>DMD_CHICK (P11533) Dystrophin| Length = 3660 Score = 33.9 bits (76), Expect = 0.24 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Frame = +2 Query: 194 NYDVIDVDNDQEVHCF--PRIVIGSTFHRPMGIDGTRSPGGETVADFKRLLRRAFRLDRV 367 NYD+ CF R+ G H PM T + GE V DF ++L+ FR R Sbjct: 3330 NYDICQ-------SCFFSGRVAKGHKMHYPMVEYCTPTTSGEDVRDFAKVLKNKFRTKRY 3382 Query: 368 VASH 379 A H Sbjct: 3383 FAKH 3386
>DMD_CANFA (O97592) Dystrophin| Length = 3680 Score = 33.9 bits (76), Expect = 0.24 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Frame = +2 Query: 194 NYDVIDVDNDQEVHCF--PRIVIGSTFHRPMGIDGTRSPGGETVADFKRLLRRAFRLDRV 367 NYD+ CF R+ G H PM T + GE V DF ++L+ FR R Sbjct: 3328 NYDICQ-------SCFFSGRVAKGHKMHYPMVEYCTPTTSGEDVRDFAKVLKNKFRTKRY 3380 Query: 368 VASH 379 A H Sbjct: 3381 FAKH 3384
>COQ9_DROME (Q8MKN0) Ubiquinone biosynthesis protein COQ9, mitochondrial| precursor Length = 326 Score = 30.0 bits (66), Expect = 3.5 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -2 Query: 346 AAEQALEVGHGLAARGAGAVDAHGAVEGGADDDAREA 236 AA+QA E A G G + A G+ G +DDA++A Sbjct: 68 AADQAAEKASQKEAGGGGGLGAKGSESTGPEDDAKQA 104
>DNAS1_CANFA (Q767J3) Deoxyribonuclease-1 precursor (EC 3.1.21.1)| (Deoxyribonuclease I) (DNase I) Length = 284 Score = 29.6 bits (65), Expect = 4.6 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = -2 Query: 367 HAVEPEGAAEQALEVGHGLAARGAGAVDAHGAVE 266 HAV PE AA +V +GL+++ A A+ H VE Sbjct: 245 HAVVPESAAPFNFQVAYGLSSQLAQAISDHYPVE 278
>SPD1_NEPCL (P19837) Spidroin 1 (Dragline silk fibroin 1) (Fragment)| Length = 747 Score = 29.3 bits (64), Expect = 6.0 Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 3/75 (4%) Frame = -2 Query: 475 GGVR---HGALVEEPAGRLAGDDEEPRLAEAGRPVVGCHHAVEPEGAAEQALEVGHGLAA 305 GGVR +G L + AGR G A AG G + + +G GL Sbjct: 568 GGVRQGGYGGLGSQGAGR-GGQGAGAAAAAAGGAGQGGYGGLGGQGVGRG------GLGG 620 Query: 304 RGAGAVDAHGAVEGG 260 +GAGA A GA +GG Sbjct: 621 QGAGAAAAGGAGQGG 635
>FOXD2_HUMAN (O60548) Forkhead box protein D2 (Forkhead-related protein FKHL17)| (Forkhead-related transcription factor 9) (FREAC-9) Length = 497 Score = 29.3 bits (64), Expect = 6.0 Identities = 24/69 (34%), Positives = 26/69 (37%) Frame = -2 Query: 463 HGALVEEPAGRLAGDDEEPRLAEAGRPVVGCHHAVEPEGAAEQALEVGHGLAARGAGAVD 284 H EE LA D+EE G P A+ GAA A G G AA A Sbjct: 56 HEPPAEEAEADLAEDEEESGGCSDGEP-----RALASRGAAAAAGSPGPGAAAARGAAGP 110 Query: 283 AHGAVEGGA 257 G GGA Sbjct: 111 GPGPPSGGA 119
>DPO4_PSESM (Q87Y22) DNA polymerase IV (EC 2.7.7.7) (Pol IV)| Length = 353 Score = 29.3 bits (64), Expect = 6.0 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 8/40 (20%) Frame = +2 Query: 53 NLYHDYTDVLVPL--------FTSTHHFGGEVQFLLTDIK 148 +++ DYTD++ PL + THHF G + DI+ Sbjct: 90 SIFRDYTDLIEPLSLDEAFLDVSDTHHFSGSATRIAQDIR 129
>TRI1_STRCO (Q9RDE2) Tricorn protease homolog 1 (EC 3.4.21.-)| Length = 1067 Score = 29.3 bits (64), Expect = 6.0 Identities = 24/86 (27%), Positives = 39/86 (45%) Frame = +2 Query: 149 DWWLDKFTPLFRQLSNYDVIDVDNDQEVHCFPRIVIGSTFHRPMGIDGTRSPGGETVADF 328 D LD++ P+ +++ +D + VD EVH + + P G G+ + G AD Sbjct: 706 DGVLDRYRPVLDRVATHDDL-VDLLWEVH--GELGTSHAYVTPRGGHGSGARQGLLGADL 762 Query: 329 KRLLRRAFRLDRVVASHDGSASLGKP 406 R A+R+DRV+ S P Sbjct: 763 SRHEDGAWRIDRVLPSETSDPDARSP 788
>SAP47_DROME (Q960T2) Synapse-associated protein of 47 kDa| Length = 551 Score = 28.9 bits (63), Expect = 7.8 Identities = 16/35 (45%), Positives = 17/35 (48%) Frame = -2 Query: 352 EGAAEQALEVGHGLAARGAGAVDAHGAVEGGADDD 248 +GA E G A G G A GAV GG DDD Sbjct: 132 KGAGADGAEGAEGAVA-GEGGAAASGAVSGGEDDD 165
>UTRO_HUMAN (P46939) Utrophin (Dystrophin-related protein 1) (DRP1) (DRP)| Length = 3433 Score = 28.9 bits (63), Expect = 7.8 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Frame = +2 Query: 194 NYDVIDVDNDQEVHCF--PRIVIGSTFHRPMGIDGTRSPGGETVADFKRLLRRAFRLDRV 367 NYDV CF R G H PM + GE V DF ++L+ FR + Sbjct: 3090 NYDVCQ-------SCFFSGRTAKGHKLHYPMVEYCIPTTSGEDVRDFTKVLKNKFRSKKY 3142 Query: 368 VASH 379 A H Sbjct: 3143 FAKH 3146
>AROC_LEIXX (Q6AF97) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 402 Score = 28.9 bits (63), Expect = 7.8 Identities = 29/109 (26%), Positives = 38/109 (34%), Gaps = 8/109 (7%) Frame = -2 Query: 487 LRQRGGVRHGALVEEPAGRLAGDDEEPRLAEAGRPVVGCHHAVEPEGAAEQALEVGHGLA 308 L GGVRHG + P G+ E P+ + P EP A + A G L Sbjct: 57 LEVSGGVRHGLSLGSPVALRIGNSEWPKWVDLMSP--------EPIAAEKLAGARGAPLT 108 Query: 307 ARGAGAVDAHGAVEGGADD--------DAREAVHLLXXXXXXXXXVGEL 185 G D G + G D+ ARE + +GEL Sbjct: 109 RPRPGHADLAGMQKYGFDEARPVLERASARETAARVALGAVARSFLGEL 157
>COBT_DEIRA (Q9RYR8) Nicotinate-nucleotide--dimethylbenzimidazole| phosphoribosyltransferase (EC 2.4.2.21) (NN:DBI PRT) (N(1)-alpha-phosphoribosyltransferase) Length = 365 Score = 28.9 bits (63), Expect = 7.8 Identities = 24/56 (42%), Positives = 28/56 (50%) Frame = -2 Query: 457 ALVEEPAGRLAGDDEEPRLAEAGRPVVGCHHAVEPEGAAEQALEVGHGLAARGAGA 290 A + +PAG L GD EE + AG V G EP GAA HG+AA G A Sbjct: 35 AQLTKPAGAL-GDLEELSVRLAG--VFGTERP-EPRGAAVLVAAGDHGVAAEGVSA 86
>PKSJ_BACSU (P40806) Putative polyketide synthase pksJ (PKS)| Length = 5045 Score = 28.9 bits (63), Expect = 7.8 Identities = 19/85 (22%), Positives = 33/85 (38%) Frame = -2 Query: 412 EPRLAEAGRPVVGCHHAVEPEGAAEQALEVGHGLAARGAGAVDAHGAVEGGADDDAREAV 233 E +A+ GR ++ +EP G A+ G++ +G + +H G DD Sbjct: 319 EAMVAKVGRRIL---ELLEPHGLPADAIRPAWGMSETSSGVIFSHEFTRAGTSDDD---- 371 Query: 232 HLLXXXXXXXXXVGELAEERRELVE 158 H + + + ELVE Sbjct: 372 HFVEIGSPIPGFSMRIVNDHNELVE 396 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,561,309 Number of Sequences: 219361 Number of extensions: 925854 Number of successful extensions: 4122 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4013 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4115 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
