ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet37b06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450324.1| Oryza sativa (japonica cultivar-group), mRNA 276 6e-71
2ref|XM_450323.1| Oryza sativa (japonica cultivar-group), mRNA 276 6e-71
3dbj|AK071383.1| Oryza sativa (japonica cultivar-group) cDNA clon... 276 6e-71
4dbj|AK059358.1| Oryza sativa (japonica cultivar-group) cDNA clon... 276 6e-71
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 268 1e-68
6dbj|AP005738.3| Oryza sativa (japonica cultivar-group) genomic D... 268 1e-68
7ref|XM_481579.1| Oryza sativa (japonica cultivar-group), mRNA 54 4e-04
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
9dbj|AP004554.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
10dbj|AP005485.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
11ref|XM_472804.1| Oryza sativa (japonica cultivar-group), predic... 48 0.024
12emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4,... 48 0.024
13dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.024
14gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 44 0.37
15gb|AE012483.1| Xanthomonas campestris pv. campestris str. ATCC 3... 42 1.5
16gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 42 1.5
17gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 5.7
18ref|XM_521868.1| PREDICTED: Pan troglodytes similar to high mobi... 40 5.7
19gb|AC090707.16| Homo sapiens chromosome 11, clone RP11-701I24, c... 40 5.7
20gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 5.7
21gb|AC108742.6| Homo sapiens 3 BAC RP11-202A13 (Roswell Park Canc... 40 5.7
22dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 5.7
23gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 5.7
24dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
25gb|AC124319.13| Homo sapiens chromosome 17, clone CTD-2047H16, c... 40 5.7
26dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
27dbj|AP003227.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
28gb|AY943953.1| Streptomyces sp. FQ1 plasmid pFP1, complete sequence 40 5.7
29ref|XM_321782.2| Anopheles gambiae str. PEST ENSANGP00000009739 ... 40 5.7
30emb|Z61142.1|HS46C4R H.sapiens CpG island DNA genomic Mse1 fragm... 40 5.7
31emb|Z61141.1|HS46C4F H.sapiens CpG island DNA genomic Mse1 fragm... 40 5.7
32emb|Z54831.1|HS168A12R H.sapiens CpG island DNA genomic Mse1 fra... 40 5.7
33emb|Z54830.1|HS168A12F H.sapiens CpG island DNA genomic Mse1 fra... 40 5.7 
>ref|XM_450324.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1270

 Score =  276 bits (139), Expect = 6e-71
 Identities = 226/255 (88%)
 Strand = Plus / Plus

                                                                       
Query: 173 ccgcgccgtccgatgcgccgcagccaaggaggccatcctgtacgcgttggagcacgatga 232
           |||||| || || ||| |||| ||||||||  | |||||||||||| |||||||||| ||
Sbjct: 172 ccgcgcggtgcgctgctccgccgccaaggattcgatcctgtacgcgctggagcacgacga 231

                                                                       
Query: 233 gatgttcaactcggaagaggtgatccagtgggagagcggcaagacgatcaactccatcgc 292
           |||||| |||||||  ||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 232 gatgtttaactcggcggaggtgatccagtgggagagcggcaagtccatcaactccatcgc 291

                                                                       
Query: 293 cgccgcgcagggcatccgcatccgccgccggtgccgtccccggtacccctcggagggctc 352
           |||||||||||||||||||||||||||||| ||||| || || |||||||| ||||||||
Sbjct: 292 cgccgcgcagggcatccgcatccgccgccgctgccgcccacgctacccctccgagggctc 351

                                                                       
Query: 353 cggcgacgacaaggccgtgccccgcaacatcctcgagcagatcgtgtgggacaaggaggt 412
           ||||| |||||| ||||| ||||||||||| |||||||||||| | |||||||| |||||
Sbjct: 352 cggcgccgacaaagccgtcccccgcaacatgctcgagcagatcatctgggacaaagaggt 411

                          
Query: 413 ggaggtgtcgcagag 427
            |||||||| |||||
Sbjct: 412 cgaggtgtcccagag 426
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>ref|XM_450323.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1419

 Score =  276 bits (139), Expect = 6e-71
 Identities = 226/255 (88%)
 Strand = Plus / Plus

                                                                       
Query: 173 ccgcgccgtccgatgcgccgcagccaaggaggccatcctgtacgcgttggagcacgatga 232
           |||||| || || ||| |||| ||||||||  | |||||||||||| |||||||||| ||
Sbjct: 173 ccgcgcggtgcgctgctccgccgccaaggattcgatcctgtacgcgctggagcacgacga 232

                                                                       
Query: 233 gatgttcaactcggaagaggtgatccagtgggagagcggcaagacgatcaactccatcgc 292
           |||||| |||||||  ||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 233 gatgtttaactcggcggaggtgatccagtgggagagcggcaagtccatcaactccatcgc 292

                                                                       
Query: 293 cgccgcgcagggcatccgcatccgccgccggtgccgtccccggtacccctcggagggctc 352
           |||||||||||||||||||||||||||||| ||||| || || |||||||| ||||||||
Sbjct: 293 cgccgcgcagggcatccgcatccgccgccgctgccgcccacgctacccctccgagggctc 352

                                                                       
Query: 353 cggcgacgacaaggccgtgccccgcaacatcctcgagcagatcgtgtgggacaaggaggt 412
           ||||| |||||| ||||| ||||||||||| |||||||||||| | |||||||| |||||
Sbjct: 353 cggcgccgacaaagccgtcccccgcaacatgctcgagcagatcatctgggacaaagaggt 412

                          
Query: 413 ggaggtgtcgcagag 427
            |||||||| |||||
Sbjct: 413 cgaggtgtcccagag 427
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>dbj|AK071383.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092E01, full
           insert sequence
          Length = 1420

 Score =  276 bits (139), Expect = 6e-71
 Identities = 226/255 (88%)
 Strand = Plus / Plus

                                                                       
Query: 173 ccgcgccgtccgatgcgccgcagccaaggaggccatcctgtacgcgttggagcacgatga 232
           |||||| || || ||| |||| ||||||||  | |||||||||||| |||||||||| ||
Sbjct: 173 ccgcgcggtgcgctgctccgccgccaaggattcgatcctgtacgcgctggagcacgacga 232

                                                                       
Query: 233 gatgttcaactcggaagaggtgatccagtgggagagcggcaagacgatcaactccatcgc 292
           |||||| |||||||  ||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 233 gatgtttaactcggcggaggtgatccagtgggagagcggcaagtccatcaactccatcgc 292

                                                                       
Query: 293 cgccgcgcagggcatccgcatccgccgccggtgccgtccccggtacccctcggagggctc 352
           |||||||||||||||||||||||||||||| ||||| || || |||||||| ||||||||
Sbjct: 293 cgccgcgcagggcatccgcatccgccgccgctgccgcccacgctacccctccgagggctc 352

                                                                       
Query: 353 cggcgacgacaaggccgtgccccgcaacatcctcgagcagatcgtgtgggacaaggaggt 412
           ||||| |||||| ||||| ||||||||||| |||||||||||| | |||||||| |||||
Sbjct: 353 cggcgccgacaaagccgtcccccgcaacatgctcgagcagatcatctgggacaaagaggt 412

                          
Query: 413 ggaggtgtcgcagag 427
            |||||||| |||||
Sbjct: 413 cgaggtgtcccagag 427
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>dbj|AK059358.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-D08, full
           insert sequence
          Length = 1270

 Score =  276 bits (139), Expect = 6e-71
 Identities = 226/255 (88%)
 Strand = Plus / Plus

                                                                       
Query: 173 ccgcgccgtccgatgcgccgcagccaaggaggccatcctgtacgcgttggagcacgatga 232
           |||||| || || ||| |||| ||||||||  | |||||||||||| |||||||||| ||
Sbjct: 172 ccgcgcggtgcgctgctccgccgccaaggattcgatcctgtacgcgctggagcacgacga 231

                                                                       
Query: 233 gatgttcaactcggaagaggtgatccagtgggagagcggcaagacgatcaactccatcgc 292
           |||||| |||||||  ||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 232 gatgtttaactcggcggaggtgatccagtgggagagcggcaagtccatcaactccatcgc 291

                                                                       
Query: 293 cgccgcgcagggcatccgcatccgccgccggtgccgtccccggtacccctcggagggctc 352
           |||||||||||||||||||||||||||||| ||||| || || |||||||| ||||||||
Sbjct: 292 cgccgcgcagggcatccgcatccgccgccgctgccgcccacgctacccctccgagggctc 351

                                                                       
Query: 353 cggcgacgacaaggccgtgccccgcaacatcctcgagcagatcgtgtgggacaaggaggt 412
           ||||| |||||| ||||| ||||||||||| |||||||||||| | |||||||| |||||
Sbjct: 352 cggcgccgacaaagccgtcccccgcaacatgctcgagcagatcatctgggacaaagaggt 411

                          
Query: 413 ggaggtgtcgcagag 427
            |||||||| |||||
Sbjct: 412 cgaggtgtcccagag 426
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  268 bits (135), Expect = 1e-68
 Identities = 195/215 (90%)
 Strand = Plus / Minus

                                                                           
Query: 207     atcctgtacgcgttggagcacgatgagatgttcaactcggaagaggtgatccagtgggag 266
               |||||||||||| |||||||||| |||||||| |||||||  ||||||||||||||||||
Sbjct: 4149898 atcctgtacgcgctggagcacgacgagatgtttaactcggcggaggtgatccagtgggag 4149839

                                                                           
Query: 267     agcggcaagacgatcaactccatcgccgccgcgcagggcatccgcatccgccgccggtgc 326
               ||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4149838 agcggcaagtccatcaactccatcgccgccgcgcagggcatccgcatccgccgccgctgc 4149779

                                                                           
Query: 327     cgtccccggtacccctcggagggctccggcgacgacaaggccgtgccccgcaacatcctc 386
               || || || |||||||| ||||||||||||| |||||| ||||| ||||||||||| |||
Sbjct: 4149778 cgcccacgctacccctccgagggctccggcgccgacaaagccgtcccccgcaacatgctc 4149719

                                                  
Query: 387     gagcagatcgtgtgggacaaggaggtggaggtgtc 421
               ||||||||| | |||||||| ||||| ||||||||
Sbjct: 4149718 gagcagatcatctgggacaaagaggtcgaggtgtc 4149684
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>dbj|AP005738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0066C12
          Length = 168874

 Score =  268 bits (135), Expect = 1e-68
 Identities = 195/215 (90%)
 Strand = Plus / Minus

                                                                          
Query: 207    atcctgtacgcgttggagcacgatgagatgttcaactcggaagaggtgatccagtgggag 266
              |||||||||||| |||||||||| |||||||| |||||||  ||||||||||||||||||
Sbjct: 133379 atcctgtacgcgctggagcacgacgagatgtttaactcggcggaggtgatccagtgggag 133320

                                                                          
Query: 267    agcggcaagacgatcaactccatcgccgccgcgcagggcatccgcatccgccgccggtgc 326
              ||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 133319 agcggcaagtccatcaactccatcgccgccgcgcagggcatccgcatccgccgccgctgc 133260

                                                                          
Query: 327    cgtccccggtacccctcggagggctccggcgacgacaaggccgtgccccgcaacatcctc 386
              || || || |||||||| ||||||||||||| |||||| ||||| ||||||||||| |||
Sbjct: 133259 cgcccacgctacccctccgagggctccggcgccgacaaagccgtcccccgcaacatgctc 133200

                                                 
Query: 387    gagcagatcgtgtgggacaaggaggtggaggtgtc 421
              ||||||||| | |||||||| ||||| ||||||||
Sbjct: 133199 gagcagatcatctgggacaaagaggtcgaggtgtc 133165
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>ref|XM_481579.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1200

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 372 ccccgcaacatcctcgagcagatcgtgtgggacaaggaggtggaggt 418
           |||||||||||||| ||| ||||| | |||||||||||||| |||||
Sbjct: 328 ccccgcaacatcctggagaagatcatttgggacaaggaggttgaggt 374
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                               
Query: 372      ccccgcaacatcctcgagcagatcgtgtgggacaaggaggtggaggt 418
                |||||||||||||| ||| ||||| | |||||||||||||| |||||
Sbjct: 13947877 ccccgcaacatcctggagaagatcatttgggacaaggaggttgaggt 13947923
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>dbj|AP004554.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0005C02
          Length = 62423

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                           
Query: 372  ccccgcaacatcctcgagcagatcgtgtgggacaaggaggtggaggt 418
            |||||||||||||| ||| ||||| | |||||||||||||| |||||
Sbjct: 2200 ccccgcaacatcctggagaagatcatttgggacaaggaggttgaggt 2246
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>dbj|AP005485.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1136_D12
          Length = 105521

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                            
Query: 372   ccccgcaacatcctcgagcagatcgtgtgggacaaggaggtggaggt 418
             |||||||||||||| ||| ||||| | |||||||||||||| |||||
Sbjct: 92272 ccccgcaacatcctggagaagatcatttgggacaaggaggttgaggt 92318
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>ref|XM_472804.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1182

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 378 aacatcctcgagcagatcgtgtgggacaagga 409
           ||||||||||||  ||||||||||||||||||
Sbjct: 289 aacatcctcgagaggatcgtgtgggacaagga 320
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>emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0016O02,
             complete sequence
          Length = 167988

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 378   aacatcctcgagcagatcgtgtgggacaagga 409
             ||||||||||||  ||||||||||||||||||
Sbjct: 57823 aacatcctcgagaggatcgtgtgggacaagga 57792
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 378      aacatcctcgagcagatcgtgtgggacaagga 409
                ||||||||||||  ||||||||||||||||||
Sbjct: 23340502 aacatcctcgagaggatcgtgtgggacaagga 23340471
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 289     tcgccgccgcgcagggcatccg 310
               ||||||||||||||||||||||
Sbjct: 4267892 tcgccgccgcgcagggcatccg 4267913
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>gb|AE012483.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 391
            of 460 of the complete genome
          Length = 12502

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 290  cgccgccgcgcagggcatccgcatc 314
            |||||||||||||||||| ||||||
Sbjct: 8497 cgccgccgcgcagggcatgcgcatc 8521
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 290    cgccgccgcgcagggcatccgcatc 314
              |||||||||||||||||| ||||||
Sbjct: 700974 cgccgccgcgcagggcatgcgcatc 700998
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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 304     gcatccgcatccgccgccgg 323
               ||||||||||||||||||||
Sbjct: 1761750 gcatccgcatccgccgccgg 1761769
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>ref|XM_521868.1| PREDICTED: Pan troglodytes similar to high mobility group box 1;
           high mobility group protein 1 (LOC466469), mRNA
          Length = 1143

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 187 gcgccgcagccaaggaggcc 206
           ||||||||||||||||||||
Sbjct: 936 gcgccgcagccaaggaggcc 917
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>gb|AC090707.16| Homo sapiens chromosome 11, clone RP11-701I24, complete sequence
          Length = 185029

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   gcgccgcagccaaggaggcc 206
             ||||||||||||||||||||
Sbjct: 50092 gcgccgcagccaaggaggcc 50073
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 284    ctccatcgccgccgcgcagg 303
              ||||||||||||||||||||
Sbjct: 496170 ctccatcgccgccgcgcagg 496189
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>gb|AC108742.6| Homo sapiens 3 BAC RP11-202A13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 115292

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   agccaaggaggccatcctgt 213
             ||||||||||||||||||||
Sbjct: 18936 agccaaggaggccatcctgt 18955
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 289     tcgccgccgcgcagggcatc 308
               ||||||||||||||||||||
Sbjct: 3325361 tcgccgccgcgcagggcatc 3325380
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 172    gccgcgccgtccgatgcgccgcag 195
              ||||||||| ||||||||||||||
Sbjct: 312077 gccgcgccggccgatgcgccgcag 312054
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 173      ccgcgccgtccgatgcgccg 192
                ||||||||||||||||||||
Sbjct: 38105165 ccgcgccgtccgatgcgccg 38105146
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>gb|AC124319.13| Homo sapiens chromosome 17, clone CTD-2047H16, complete sequence
          Length = 121112

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 406   aggaggtggaggtgtcgcag 425
             ||||||||||||||||||||
Sbjct: 28431 aggaggtggaggtgtcgcag 28412
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>dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0471B04
          Length = 138025

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   ccgcgccgtccgatgcgccg 192
             ||||||||||||||||||||
Sbjct: 73199 ccgcgccgtccgatgcgccg 73180
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>dbj|AP003227.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0018C10
          Length = 200183

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   ccgcgccgtccgatgcgccg 192
             ||||||||||||||||||||
Sbjct: 24399 ccgcgccgtccgatgcgccg 24380
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>gb|AY943953.1| Streptomyces sp. FQ1 plasmid pFP1, complete sequence
          Length = 39360

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 334  ggtacccctcggagggctcc 353
            ||||||||||||||||||||
Sbjct: 7290 ggtacccctcggagggctcc 7271
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>ref|XM_321782.2| Anopheles gambiae str. PEST ENSANGP00000009739 (ENSANGG00000007297),
            partial mRNA
          Length = 1845

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 375  cgcaacatcctcgagcagat 394
            ||||||||||||||||||||
Sbjct: 1291 cgcaacatcctcgagcagat 1310
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>emb|Z61142.1|HS46C4R H.sapiens CpG island DNA genomic Mse1 fragment, clone 46c4, reverse
           read cpg46c4.rt1a
          Length = 200

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 187 gcgccgcagccaaggaggcc 206
           ||||||||||||||||||||
Sbjct: 120 gcgccgcagccaaggaggcc 139
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>emb|Z61141.1|HS46C4F H.sapiens CpG island DNA genomic Mse1 fragment, clone 46c4, forward
           read cpg46c4.ft1a
          Length = 201

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 187 gcgccgcagccaaggaggcc 206
           ||||||||||||||||||||
Sbjct: 82  gcgccgcagccaaggaggcc 63
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>emb|Z54831.1|HS168A12R H.sapiens CpG island DNA genomic Mse1 fragment, clone 168a12,
           reverse read cpg168a12.rt1a
          Length = 201

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 187 gcgccgcagccaaggaggcc 206
           ||||||||||||||||||||
Sbjct: 80  gcgccgcagccaaggaggcc 61
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>emb|Z54830.1|HS168A12F H.sapiens CpG island DNA genomic Mse1 fragment, clone 168a12,
           forward read cpg168a12.ft1a
          Length = 185

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 187 gcgccgcagccaaggaggcc 206
           ||||||||||||||||||||
Sbjct: 123 gcgccgcagccaaggaggcc 142


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,744,135
Number of Sequences: 3902068
Number of extensions: 2744135
Number of successful extensions: 57578
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56701
Number of HSP's gapped (non-prelim): 877
length of query: 427
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 405
effective length of database: 17,147,199,772
effective search space: 6944615907660
effective search space used: 6944615907660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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